Clc11G09865 (gene) Watermelon (cordophanus) v2

Overview
NameClc11G09865
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrotransposon protein
LocationClcChr11: 12753052 .. 12760167 (-)
RNA-Seq ExpressionClc11G09865
SyntenyClc11G09865
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGGCCCAGGCTGTAGTGGGTTTGGGTGGAATGCGGAGCGCAAATGTATTGATTGTGAGGCGGAGATATTTGACGCATGGGTCAAGGTAATTTAATTACATGTTTTATTCTTCGTTTAAATTTGTATAGGTCATAACATAACACAAGCCACCTTTAACAGAGTCATCCGAGTGCAAAAAGACTGTGCCATAAGTCATTTCCATACTATGATGACTTGGCCATCGTATTCGGAAAAGATAGAGCCACAGGGAGTCATGCAACCACCACTGCAGAGGTCGAATTTGAACCTGTTATGGAAGAGGAGAACGAGGACATCCTAAACAACCAGTCCCCAGACTTTGAGAACTTCTATATTCCTGATCCACCTTTTGCTAGGTCGCCCACGTCAGAGGACTTTCTAACTACCCCCAGTGGTAGAGGGTCTGGGAGTAGCTTGCCATCAAGGAGTAGGAGGTCCCGAAGTTCATCGATTAGAGAGTACAGTGAGGTGGTTCGTGAGGGATTCCAACTTCTGACGAAGTCTATTGACGGCATTGCACAGTGGCCTGTCATGAACGAGGACCTGGCAAGGTGTCGTCGTCGAAAACTATACGCCGAGCTGCAATTCATTCCTAGTCTGTCAATACAAGATGGATTGACTGTTGCACGGTCATTGCTTGCAGATCCAATGCTGTTAAGCCACTTTATGGACTTCCCACCACAATGGAAGTACGACTATTGCATGCGAGTCCTCGGGCGACCACGGGATCCAGCACCATGACTCTGCTTTTTCTCCCTTCAATTTGCAACCCTAGTTATTTTATGATTAAGGAACCTTATCTTTCCATGATGTTGTTTGTACTTTGAATTATGTGTACTTTTTTTTAACTTTAATTTTATATCGTTGTCCTTTTATTATATACTAACATTATTTTACTTTTAATTCTAATATACTGTGTTAGTTGAAATAGATGTAAAAAAAAAAAAAATCGAAATAATACTTCAAGAAAAAGTAGACAACATTATAATATAGCATGATAATTTGAAATAATATTTAAAAAGAAAAAAAAATTAAAAATCAATCTTATAATATGGTAGTTTAATTTTTTATAGTATGAACAAATAAAATTCAAAATACATGATGGTTAAAAAAGATGTAGAAAAAAAAAACAGTGGAAATAATATTTAAAAAAAAAAGTCAAAATACTATTTAAAAAGAAAAAAAATCATAATTATAATATAGTATGATAGTTTCATTTTCTATGGTATGAATAGATATAGTTCAAAATATATGATGCTTAAAACAAATCTAGAAAAAAAATTACTGAAAATAATATTAAAAAAATAAAAACAGTCAAAATAATATTTAAAAGCAAAAAAATCAAAATTATAATATACTATGATAGTTTAATTTTCTATAGTATGAACCGAAAAATTTCAACTTATATGATGCTTAAAACAGATGTAGAAAAAAAAAACATCCATAATAATATTAAAAGAAAAAAAACAGCCAAACCCAACCCAAACCCAAGCCTGCAGTCCAAATACTGTAATCACCCAGCCAATCCAACCCTGCACTCCAAACACCATAATCAGATTCCAATGTATTCCAATTCCAGACAACAAAACCCATCGTAATCAGATTCCCAGTAATCCTAATTACAATCTGGCACCCCAAACACCCCCTTATTGTCTAGAATTTGATCACAGTATTTCTAGTGGAAATTTGGGTTTACTAGATTTCTGGTTATTGTGTTTAATTGCATGTTGGGTTGGATTTTTTTTTTTTTTTTAAGGGTTAGTTGCACAAATAGCAAACGGGTCCAAAATAATAAAAAAAAATATAACACAAGGAAAAATATATTAGGGATATAGCACAAAATTAGGGTCAGATATCACTAATAGCAGCTATTAGTGATAGTCATATTGGTAAATGACTAAAAATCCCATGTTTAGCCTATCATTTCATGCTTCTTCTTCTGATTTTCTCAAATTGAAAGTTATCACTAATAGCAACTATTAGTGGTTATTACTGATAGCTGCTAGCAGTGATAACTTTCAATGCTATCATTTATTATTAACACTTAAAGTCATCAATGGTTATCAATAGTAGACTCTTATAAGTAGTTATCAATTTTGAAAGGAAACTATCAACTTTCAAAGATTAACATTTAAAGCTATAAGTGATAGAAGTCTATTAATGAAAGGTTTATAAGTGACTATCATTGATATCTACCTAAGTCATATTACTAATAACTTCTATTAATGACCATCACCGATAGCTTTTAGTAGTGGCTATCAATGATAGACTTTCATCCAATGAAATTGACTTTTATATCATTGATATCATCAATATATAGATATCACCTAATTTCTATCACTAATATCATTTATATCATGGTTATCGATGATAGCTTCTATCACTGATAACATGTTATCAAATATAACTTTTGTCATTCATTTTTACCATCAAATAACATGGTATCGTTGATAGCTTCTATCACTGATAACATGCTATTAGTGATAACTTCTAGGCATGTCATTTACACTTTAGTTCGGTATTCAACTTTATTAATTAATTCCACTAAGTTGGCTACCAATGATAGGCTTCTATAAGTGGCTAATAACTATGGAAGAAAATCATCAAAAATTAATCTATCAATAATAGAAAATATTAGTGGTTATTTCTGATAGACTTTCATTAGTAACTATCAATTTTGAAACATTAACACTCAAAGCTATCAATGCTGTTATTTAGAAACTTTTATTATGATTATCAATAATAGACTTCTATCACTATTATCTACCTAAGTTCAATATCACCGATATATAAATATGACTTATATCTATCTAAGTCCTATCACTAATATCACTGGTAATTGATATTACTGATATACAAATATTTAGTGAATTCTTTTCTAACATTTAAAAACATGAGTGATAGCCAGTGAGTTCTTCAATCAAAGATAAAATTCTTTGAGTGACTAAGTTATAAGTATATTAGTGGCTATCACCGATAGATTTATATTATTATGTCATAATAATGAATCACTTATAGCTACTAATAGATTCTATTAGTTTGACTTTTAGTTTATCTTGAGTATTTATTAATAATTTAGTTTACATTAGTTGATAAAAGTCCATAAGTCATAAACTTTTATCGTTGATTGATGACCTATAATAGATTTAGTTTATTAGTAATATCATAGCCTATCAATGATAGAAATTTATTACTCATAGATTTCATTTTTAAGGTCCTATAAAAAGAAAAAAAAAAACTATTGGCCCGTTTGATAACGTTCTCATTTCTCATCTTTTGAGAAATAAACTTGTTTAATAACTATTCTTGTTTCTTATTTCTAACTTTTAAGAGATGTGTTTCTAAAAATGGTGCAAAATTGAGGTCTAAAAAAATTAGTTTCTTTTGTCAATTTTTTTCTTTTGTCAATTTCTTTTTGCTATTTATATTTAACATTTCGTTATAATAATCAAACTTGATGATTGATTTGTTGGTGTTAAGTCACTTATGAATCATACACTTTCAAATCCAAAAAGAAAAAAGAAAATATGAGGAGATTGAGAATATGGAAACAAACACTTGAAAAAAAAATGAAAGAAAAAGAAAGGGAAGAAGAAAATATGAGGAGATTGGAAAGATGAAGAAAAATTGGAAAAAGAAAAGAAAAAAAGAAGAAGAAAAAAATATGATGAGATTGGAGAGATAGAAGAAAAATTGGAAAAAGAAAAAAAAATATATGAGAAGATTGGGGAGAGGAAGAAATTTTGTGGAAAAAAATGGAAAAAAGAAAAGAAAGGATGAAGAAAATAGGAGGAGATTGAAGAGATGGAAACAAAAGCTGGAAAAAGAAAATGAAAAAAAAAAAAGTTGTGCAAGACAAGGGCCAAAATTGGAAATCACAAAAGTTGAAAAGTTGACTAGTCAAATTTGCAAATATTTTAAAGATGTGATATTTTTAGATTTTCTCCCTTATTTTGAATTGCACAAAATGTCCAGAAACAAAAATATTTTTTTTATGGATGACCTCTTCCTAAAAACTTTATCATTAATGACTTTTTGGCTAAATGAAATACCTATTTTACCCCTAAAATTAAAACACCAACGGAACCATCTCTCCCTCGAAATGCTTTGCATTGAATGCTATGGACTTCTTCACCAAATCATACAGAATGATTCAATTCAACTAACATTCTACCAACAAAATTGAATATGGGGATTCTAATGAACGACCACTTTCTGATATTCTTCCATTGTTCCATTTTTGTCTGCGAGTTTCACAAACTGCCGAACTTCTTATTCCATTGTTCTCTATGGTTGCACGAACTTCTGAACCCATTCTTCCATTGTTCTCTGCGAGTTCCACGAACTCTCGGTTCTTCTTCGTCCAGTTCCAATGTTGGTCGCTTTCATCTTCGTCCAGAAACTCAAAGAATGTAAGTGTTTTTATTACCAGATCGTTTAGTTTTATATAAACAATCACTTACATACAAGTACATAATCGATTAAATTCATATAAGCAATCATTTATAGCTAACTGATCGATCGCGTACGTGGTACTAAGCGATCGCGTATGTGATACTAAGCGATCGCTTACACCTTACTATGCGATCACATACAATTTTCCAGGCGATCACATACCTCTTACTAGGCGATTGCTCAATTTTTTTTCAACGATCATTTATAATTAAAAATCCTTAATTCTGTTGTTTGCAGATCAATGACTCTACTTCGCATCTTTGTACTATTTGGTGGGAAATGAGATCAGTCCGGATGTAATTGTGTCGGAGGTCACATGAAAGGTCTGAAGATCAAATAGGATATAACTTGTAATGAATTAGTGAGTATTATGCACCAACGACTAAACATCAATCCCTATCTACTTAATATACATATCAAGTGTTGTTACAATCTATTGGTTCAAGTTTCTTTAATTGACATAGTGGATGATGAAGACCTTAGCTTTTTTTAGAAGAAAGTGATGTATCTCGGATGTCATTGTTTGTATCAGTTACACCTCATGAAAGACATGGAGTAGATGATATGCACCAAGTGAAGCATTTCCAAGCATTCCAACTTATGATTTTCCCCACACGACTTCAATGGACAAGAATATTGAGGCATGCAATTTCAAATGAAAAATGGGTTGGTCAGAACGTCCAATCTAAGTATAGTCCATAATATTATGCTGAAGATGTGTACGGACAATGTTCAAGACCATAAACAATCTCAACACCCTCCACTCATGTTCCGACATCGTCCATTCATGTTTCAACTAGGATAATTAATATAATATGATATTTTAAATCTCAAAACAACTTTTGAAAATTAGTTGATGTACAATATTTGAAAATTCAAAACAATTGTTAAATCTTATTTGAAAAATTCAAAACAATTATTAAATCTCAAGATTTATGGCAAATTATTTACTTGGAAAGATGCTCTTAGTTGACGTTGAAAGTGTATCGAGATGTTAATAGAACCAATGTTATAGTCTCATTAATAAAGATGCCGGATTAATTACATTGCAAAAGGGACGATGAGACCATTTTAGGACTTCTAAAAATTGGACTCATGTGACATTCATGTGTTTTGCTATAATTCAAAATAATTGATCCGCTTTTACTATTTTTCGAAATTACAGTATAATTACTGCCATATGAATGAATAGTTTTCACATGTTTTTATAATATAGATAAATAGTTTTTATGGTTTTGTGTGCCTAGAAAATAAATATCTTAGTATAAATTAAAATTTAAAAAAAAAATTAATTAAAAAGACAATCAAATTATCCATATAAAATTTAAAAATATTTTTTTAACTAACACATGATTAACATGAAATTTTATACAGCATATAAAAATATTTTTAGTTTACACTAAAATTTAAAATTAAAAAGATAATCTTATAATCCAAATCCAAATTAAATTATTTTTTTTAACTACAAGAAGAAGAGAAGATTATGACGAAATAAAAAAATACGTTAGTTTAAACTAAAGTTTAAAATTGAGGGAATAATAAAATAGTCTAAATAAACCGTAAGATTTTTTTTTTTCCTAAACTAATAGAGAATTTATCAGTTTAAAATTGAGAGAATAATAAACTTATCCAAATCAAAATAAAAATAATAGTGGAATATTTTTGTTATCATATCATACCTATAATTTAAAATTTTCTCTTTTATCTTGATTAACGAAATAAGAATTAATGCAGTATTTTTTAATAAAAAAAATAACATAAGTAGAGAATCAAGTATATTGTTCCTCCGAGAATAAGATCAATTATAATCAAAATAAAAAAGCATTAACTTTTAATTATTAACTAATTAATAAAAAAACAATTTTAGTTCAAATTAATATTTAAAATTAAATAGGTAATTAAATCTATCTATATCGAAGTAAAAAATTATATTATTTTAGTTACTAGACTATCATAACAATTTTTTTAAAAAAGAAAAAAAAATATTTTAGTATGTTTAATCAAATCTTTCCCAAAATTTTAAAAATTAGATAACTAATTTAGCTTTTAAAAAATTTTAAATTTAAATTAAAGTTTGGATTCAATGGATAATTAGATGATGGAAAAGAAAGTTTATATATATATATATACAATTAATTAATTAATTTAAAACAATTTTAAACTATTAGATTGATTTAAGTTGAAGCTATGACTCATCAAATGATATAAAATTAAATCAAAATTTAAAATCAAATAGATAATCAAAATAAAAATTAATTTAAGAATATAATATATTTTAGCTATGAATGATTAATTTACAATAATAATTTATTAAATATTTACATTTAAACTAAAATTAAATTCGATTATTCTCTTCGATTCATTCTTATTTTGTAATTAAGCTGTTTTTTTTTTCTAAATACAATATTTATGGGATGAAGACCGAACCTCCCACCTTAGGATAGAAGGTCATGTCAATTACCACTAGTTAAACTTGCTTAGACAATAATTAAATTACATTTTAAACTTTACAAAATATATATAGATTAGTTTTTTACCCCGTGCAAATGGACATGCATTCCTTTACAAAAATTTAACTTTAAACAAACTGTGAAAATAAGTATAATTTTTTGTTGAAGTAGAAGTAAGTTATCTTTAA

mRNA sequence

ATGTTGGGCCCAGGCTGTAGTGGGTTTGGGTGGAATGCGGAGCGCAAATGTATTGATTGTGAGGCGGAGATATTTGACGCATGGGTCAAGAGTCATCCGAGTGCAAAAAGACTGTGCCATAAGTCATTTCCATACTATGATGACTTGGCCATCGTATTCGGAAAAGATAGAGCCACAGGGAGTCATGCAACCACCACTGCAGAGGTCGAATTTGAACCTGTTATGGAAGAGGAGAACGAGGACATCCTAAACAACCAGTCCCCAGACTTTGAGAACTTCTATATTCCTGATCCACCTTTTGCTAGTTATCTTTAA

Coding sequence (CDS)

ATGTTGGGCCCAGGCTGTAGTGGGTTTGGGTGGAATGCGGAGCGCAAATGTATTGATTGTGAGGCGGAGATATTTGACGCATGGGTCAAGAGTCATCCGAGTGCAAAAAGACTGTGCCATAAGTCATTTCCATACTATGATGACTTGGCCATCGTATTCGGAAAAGATAGAGCCACAGGGAGTCATGCAACCACCACTGCAGAGGTCGAATTTGAACCTGTTATGGAAGAGGAGAACGAGGACATCCTAAACAACCAGTCCCCAGACTTTGAGAACTTCTATATTCCTGATCCACCTTTTGCTAGTTATCTTTAA

Protein sequence

MLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATGSHATTTAEVEFEPVMEEENEDILNNQSPDFENFYIPDPPFASYL
Homology
[Close]
BLAST of Clc11G09865 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 107.8 bits (268), Expect = 5.6e-20
Identity = 45/69 (65.22%), Postives = 54/69 (78.26%), Query Frame = 0 

Query: 1   MLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATG 60
           M GP CSGFGWN E +CI  E ++FD+W+KSHP+AK L HKSFPYYDDL+ VFGKDRATG
Sbjct: 84  MRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLLHKSFPYYDDLSYVFGKDRATG 143

Query: 61  SHATTTAEV 70
           + + T   V
Sbjct: 144 ARSETFPNV 152

[Close]
BLAST of Clc11G09865 vs. NCBI nr
Match: KAA0062747.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22546.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 107.8 bits (268), Expect = 5.6e-20
Identity = 45/69 (65.22%), Postives = 54/69 (78.26%), Query Frame = 0 

Query: 1   MLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATG 60
           M GP CSGFGWN E +CI  E ++FD+WVKSHP+ K L HKSFPYYDDL+ VFGKDRATG
Sbjct: 366 MRGPSCSGFGWNEEFQCIIAERDLFDSWVKSHPATKGLLHKSFPYYDDLSYVFGKDRATG 425

Query: 61  SHATTTAEV 70
           + + T  +V
Sbjct: 426 ARSETFVDV 434

[Close]
BLAST of Clc11G09865 vs. NCBI nr
Match: XP_030483301.1 (uncharacterized protein LOC115699898 [Cannabis sativa])

HSP 1 Score: 107.5 bits (267), Expect = 7.3e-20
Identity = 50/93 (53.76%), Postives = 63/93 (67.74%), Query Frame = 0 

Query: 1   MLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATG 60
           MLGP  SGFGWN + KC+  +  +FD WVKSHP+AK L HK FPYYD+LAIV+GKDRATG
Sbjct: 89  MLGPSASGFGWNEQLKCVVADKIVFDEWVKSHPTAKGLLHKPFPYYDELAIVYGKDRATG 148

Query: 61  SHATTTAEVEFEPVMEEENEDILNNQSPDFENF 94
             A     + F   ++E  E+I N  + DF+ F
Sbjct: 149 DGA-----MGFSETLDEIAEEINNGWNDDFDPF 176

[Close]
BLAST of Clc11G09865 vs. NCBI nr
Match: CAD1817157.1 (unnamed protein product [Ananas comosus var. bracteatus])

HSP 1 Score: 107.1 bits (266), Expect = 9.5e-20
Identity = 52/95 (54.74%), Postives = 63/95 (66.32%), Query Frame = 0 

Query: 1   MLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATG 60
           MLGP  SGFGWN   KCI CE  +FDAWVKSHP+A  L  KSFPY + L++VFGKDRATG
Sbjct: 93  MLGPAASGFGWNDAEKCIICEKTVFDAWVKSHPTAAGLRGKSFPYLEQLSVVFGKDRATG 152

Query: 61  SHATTTAEVEFEPVMEEENEDILNNQSPDFENFYI 96
           + A + A+     V EEE     + Q PD E F++
Sbjct: 153 TGAESAADAA-RNVEEEELRTHASTQDPDVEMFFM 186

[Close]
BLAST of Clc11G09865 vs. NCBI nr
Match: KAA0043158.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 106.3 bits (264), Expect = 1.6e-19
Identity = 46/69 (66.67%), Postives = 53/69 (76.81%), Query Frame = 0 

Query: 1   MLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATG 60
           M GP CSGFGWN E KCI  E E+FD WV+SHP+AK L +KSFPYYD+L  VFG+DRATG
Sbjct: 57  MRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKSFPYYDELTYVFGRDRATG 116

Query: 61  SHATTTAEV 70
             A T A+V
Sbjct: 117 RFAETFADV 125

[Close]
BLAST of Clc11G09865 vs. ExPASy TrEMBL
Match: A0A5D3DG22 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold523G00290 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.7e-20
Identity = 45/69 (65.22%), Postives = 54/69 (78.26%), Query Frame = 0 

Query: 1   MLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATG 60
           M GP CSGFGWN E +CI  E ++FD+WVKSHP+ K L HKSFPYYDDL+ VFGKDRATG
Sbjct: 366 MRGPSCSGFGWNEEFQCIIAERDLFDSWVKSHPATKGLLHKSFPYYDDLSYVFGKDRATG 425

Query: 61  SHATTTAEV 70
           + + T  +V
Sbjct: 426 ARSETFVDV 434

[Close]
BLAST of Clc11G09865 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.7e-20
Identity = 45/69 (65.22%), Postives = 54/69 (78.26%), Query Frame = 0 

Query: 1   MLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATG 60
           M GP CSGFGWN E +CI  E ++FD+W+KSHP+AK L HKSFPYYDDL+ VFGKDRATG
Sbjct: 84  MRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLLHKSFPYYDDLSYVFGKDRATG 143

Query: 61  SHATTTAEV 70
           + + T   V
Sbjct: 144 ARSETFPNV 152

[Close]
BLAST of Clc11G09865 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.7e-20
Identity = 45/69 (65.22%), Postives = 54/69 (78.26%), Query Frame = 0 

Query: 1   MLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATG 60
           M GP CSGFGWN E +CI  E ++FD+W+KSHP+AK L HKSFPYYDDL+ VFGKDRATG
Sbjct: 84  MRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLLHKSFPYYDDLSYVFGKDRATG 143

Query: 61  SHATTTAEV 70
           + + T   V
Sbjct: 144 ARSETFPNV 152

[Close]
BLAST of Clc11G09865 vs. ExPASy TrEMBL
Match: A0A803QNC5 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.5e-20
Identity = 50/93 (53.76%), Postives = 63/93 (67.74%), Query Frame = 0 

Query: 1   MLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATG 60
           MLGP  SGFGWN + KC+  +  +FD WVKSHP+AK L HK FPYYD+LAIV+GKDRATG
Sbjct: 344 MLGPSASGFGWNEQLKCVVADKIVFDEWVKSHPTAKGLLHKPFPYYDELAIVYGKDRATG 403

Query: 61  SHATTTAEVEFEPVMEEENEDILNNQSPDFENF 94
             A     + F   ++E  E+I N  + DF+ F
Sbjct: 404 DGA-----MGFSETLDEIAEEINNGWNDDFDPF 431

[Close]
BLAST of Clc11G09865 vs. ExPASy TrEMBL
Match: A0A6V7NF77 (Myb_DNA-bind_3 domain-containing protein OS=Ananas comosus var. bracteatus OX=296719 GN=CB5_LOCUS368 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 4.6e-20
Identity = 52/95 (54.74%), Postives = 63/95 (66.32%), Query Frame = 0 

Query: 1   MLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATG 60
           MLGP  SGFGWN   KCI CE  +FDAWVKSHP+A  L  KSFPY + L++VFGKDRATG
Sbjct: 93  MLGPAASGFGWNDAEKCIICEKTVFDAWVKSHPTAAGLRGKSFPYLEQLSVVFGKDRATG 152

Query: 61  SHATTTAEVEFEPVMEEENEDILNNQSPDFENFYI 96
           + A + A+     V EEE     + Q PD E F++
Sbjct: 153 TGAESAADAA-RNVEEEELRTHASTQDPDVEMFFM 186

[Close]
BLAST of Clc11G09865 vs. TAIR 10
Match: AT5G27260.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 55.1 bits (131), Expect = 4.0e-08
Identity = 27/88 (30.68%), Postives = 48/88 (54.55%), Query Frame = 0 

Query: 7   SGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATGSHATTT 66
           SGFGW+   K      E++  ++K+HP+ K+L + +F ++D+L I+FG+  ATG +A   
Sbjct: 92  SGFGWDPLTKRFTASDEVWSDYLKAHPNNKQLRYDTFEFFDELQIIFGEGVATGKNAIGL 151

Query: 67  AEVEFEPVMEEENEDILNNQSPDFENFY 95
            +   + +     E+       DF+N Y
Sbjct: 152 CD-STDGLTYRAGENPRKEYVDDFDNVY 178

[Close]
BLAST of Clc11G09865 vs. TAIR 10
Match: AT1G30140.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27260.1); Has 313 Blast hits to 256 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 295; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 53.5 bits (127), Expect = 1.2e-07
Identity = 23/57 (40.35%), Postives = 36/57 (63.16%), Query Frame = 0 

Query: 7   SGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATGSHA 64
           SGFGW+ E K      E++  ++K+HP+ K +  +S  +++DL I+FG   ATGS A
Sbjct: 88  SGFGWDPETKKFTAPDEVWRDYLKAHPNHKHMQTESIDHFEDLQIIFGDVVATGSFA 144

[Close]
BLAST of Clc11G09865 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 48.9 bits (115), Expect = 2.9e-06
Identity = 24/87 (27.59%), Postives = 46/87 (52.87%), Query Frame = 0 

Query: 7   SGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATGSHATTT 66
           +GF W+A R  +  + +I++ ++++HP A+    K+ P Y +L  +FGK+ + G +  T 
Sbjct: 399 NGFSWDARRDMVIADDDIWNTYIQAHPEARSYRVKTIPSYPNLCFIFGKETSDGRY--TR 458

Query: 67  AEVEFEPVMEEENEDILNNQSPDFENF 94
               F+P      E +  N+S   + F
Sbjct: 459 LAQAFDP---SPAETVRMNESGSTDGF 480

[Close]
BLAST of Clc11G09865 vs. TAIR 10
Match: AT2G24960.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). )

HSP 1 Score: 47.8 bits (112), Expect = 6.4e-06
Identity = 25/80 (31.25%), Postives = 39/80 (48.75%), Query Frame = 0 

Query: 8   GFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVF------GKDRATGS 67
           GF W+  R  I  +  ++D+++K HP A+    KS P Y+DL  +F      G D     
Sbjct: 245 GFSWDETRLMISADDAVWDSYIKDHPLARTYRMKSLPSYNDLDTIFACQAEQGTDHRDDG 304

Query: 68  HATTTAEVEFEPVMEEENED 82
            A  T+E +     +E+N D
Sbjct: 305 SAAQTSETK---ASQEQNSD 321

[Close]
BLAST of Clc11G09865 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 42.7 bits (99), Expect = 2.0e-04
Identity = 21/96 (21.88%), Postives = 41/96 (42.71%), Query Frame = 0 

Query: 8   GFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATGSHATTT- 67
           GF W+ ER+ +  +  ++  ++K+H  A++   +  PYY DL ++ G      +      
Sbjct: 259 GFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRPIPYYKDLCVLCGDSGIEENECFVAM 318

Query: 68  ----AEVEFEPVMEEENEDILNNQSPDFENFYIPDP 99
                E EF+        D+  +   +  N  + DP
Sbjct: 319 DWFDPETEFQEFKSSGTTDLSISAEEEDSNSLLFDP 354

The following BLAST results are available for this feature:
BLAST of Clc11G09865 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008441954.15.6e-2065.22PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret... [more]
KAA0062747.15.6e-2065.22retrotransposon protein [Cucumis melo var. makuwa] >TYK22546.1 retrotransposon p... [more]
XP_030483301.17.3e-2053.76uncharacterized protein LOC115699898 [Cannabis sativa][more]
CAD1817157.19.5e-2054.74unnamed protein product [Ananas comosus var. bracteatus][more]
KAA0043158.11.6e-1966.67retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of Clc11G09865 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc11G09865 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DG222.7e-2065.22Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U0H72.7e-2065.22Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3B4L32.7e-2065.22uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=... [more]
A0A803QNC53.5e-2053.76Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A6V7NF774.6e-2054.74Myb_DNA-bind_3 domain-containing protein OS=Ananas comosus var. bracteatus OX=29... [more]
BLAST of Clc11G09865 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G27260.14.0e-0830.68unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G30140.11.2e-0740.35unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT2G24960.22.9e-0627.59unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT2G24960.16.4e-0631.25unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT4G02210.12.0e-0421.88unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46250:SF3MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEINcoord: 1..72
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 1..72

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc11G09865.1Clc11G09865.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane