Clc11G09610 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G09610
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr11: 12364588 .. 12364791 (+)
RNA-Seq Expression	Clc11G09610
Synteny	Clc11G09610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATAACTACTCTCTTGCCGAAGCCTACGTAATGGGGAGAATGAATCGTGAGAAATTGAAGAAGGAAGAAGAACGACAAAAGGCCAAGAAAATCAGTGCCCATTCCAGCCCTAATTACGAACCCAAACAACGCTCCAGCTGGATCTTGAGGAAAATGAAGATCCATCCAAGTAATGCTAATTCTAAGAGCTCTATCAAGTAA

mRNA sequence

ATGAATAACTACTCTCTTGCCGAAGCCTACGTAATGGGGAGAATGAATCGTGAGAAATTGAAGAAGGAAGAAGAACGACAAAAGGCCAAGAAAATCAGTGCCCATTCCAGCCCTAATTACGAACCCAAACAACGCTCCAGCTGGATCTTGAGGAAAATGAAGATCCATCCAAGTAATGCTAATTCTAAGAGCTCTATCAAGTAA

Coding sequence (CDS)

ATGAATAACTACTCTCTTGCCGAAGCCTACGTAATGGGGAGAATGAATCGTGAGAAATTGAAGAAGGAAGAAGAACGACAAAAGGCCAAGAAAATCAGTGCCCATTCCAGCCCTAATTACGAACCCAAACAACGCTCCAGCTGGATCTTGAGGAAAATGAAGATCCATCCAAGTAATGCTAATTCTAAGAGCTCTATCAAGTAA

Protein sequence

MNNYSLAEAYVMGRMNREKLKKEEERQKAKKISAHSSPNYEPKQRSSWILRKMKIHPSNANSKSSIK

Homology

[Close]

BLAST of Clc11G09610 vs. NCBI nr
Match: ADN33680.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 87.4 bits (215), Expect = 5.0e-14
Identity = 52/73 (71.23%), Postives = 58/73 (79.45%), Query Frame = 0


Query: 1  MNNYSLAEAYVMGRMNREKLKKEEERQKAKK----ISAHSSPNYE-PKQRSSWILRKMKI 60
          MNNYSLAEAYVMG+MNREKLKKEEE +  KK     S  SSPNY+  KQ SSW+LRKMKI
Sbjct: 2  MNNYSLAEAYVMGKMNREKLKKEEEGENTKKKMISTSTDSSPNYDAKKQGSSWLLRKMKI 61

Query: 61 HPSN-ANSKSSIK 68
          HPSN ANS +S+K
Sbjct: 62 HPSNKANSNNSVK 74

[Close]

BLAST of Clc11G09610 vs. ExPASy TrEMBL
Match: E5GB38 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.4e-14
Identity = 52/73 (71.23%), Postives = 58/73 (79.45%), Query Frame = 0


Query: 1  MNNYSLAEAYVMGRMNREKLKKEEERQKAKK----ISAHSSPNYE-PKQRSSWILRKMKI 60
          MNNYSLAEAYVMG+MNREKLKKEEE +  KK     S  SSPNY+  KQ SSW+LRKMKI
Sbjct: 2  MNNYSLAEAYVMGKMNREKLKKEEEGENTKKKMISTSTDSSPNYDAKKQGSSWLLRKMKI 61

Query: 61 HPSN-ANSKSSIK 68
          HPSN ANS +S+K
Sbjct: 62 HPSNKANSNNSVK 74

The following BLAST results are available for this feature:

BLAST of Clc11G09610 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN33680.1	5.0e-14	71.23	hypothetical protein [Cucumis melo subsp. melo]	[more]

BLAST of Clc11G09610 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc11G09610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E5GB38	2.4e-14	71.23	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

BLAST of Clc11G09610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..32

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G09610.2	Clc11G09610.2	mRNA