Clc11G08930 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G08930
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Gag/pol protein
Location	ClcChr11: 11022521 .. 11022976 (+)
RNA-Seq Expression	Clc11G08930
Synteny	Clc11G08930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCCTCAATTGTCACACTGCTTAAAAATGAAAAACTAACCGGTGAAAACTACGTAACGTGGAAATCTAACCTGAATACGATTCTGTTTATAGATGATATATGGTTTGTCTTAACGGAGGAGTTTCCTCCTATCCCCTCTTGTAATGCATCCCAATCTGTTAGGGATGCACATGACCGTTGGACAAAGGCCAATGACAAGGCCCGAGTTTATATCTTGGCAAGTTTGTCTAACGTACTCAACAAGAAACATGAGGCCATGATGAATGCACGACAGATCATGGAGTCTCTCTAGGAAATGTTTGGACAACCGTCCTCACAGATCCGGCACGAGGCCCTCAAGTACGTTTATAATGCACGTATGAAGAAAGGCCAATCGGTGAGAGAACATGTTCTCAACTTGATGCTCCAATTCAACGTTGCTGAAATGAACAGCGCGGTCATTGACGAGTAG

mRNA sequence

ATGTCTTCCTCAATTGTCACACTGCTTAAAAATGAAAAACTAACCGGTGAAAACTACGTAACGTGGAAATCTAACCTGAATACGATTCTGTTTATAGATGATATATGGTTTGTCTTAACGGAGGAGTTTCCTCCTATCCCCTCTTGTAATGCATCCCAATCTGTTAGGGATGCACATGACCGTTGGACAAAGGCCAATGACAAGGCCCGAGTTTATATCTTGGCAAGTTTGTCTAACATCCGGCACGAGGCCCTCAAGTACGTTTATAATGCACGTATGAAGAAAGGCCAATCGGTGAGAGAACATGTTCTCAACTTGATGCTCCAATTCAACGTTGCTGAAATGAACAGCGCGGTCATTGACGAGTAG

Coding sequence (CDS)

ATGTCTTCCTCAATTGTCACACTGCTTAAAAATGAAAAACTAACCGGTGAAAACTACGTAACGTGGAAATCTAACCTGAATACGATTCTGTTTATAGATGATATATGGTTTGTCTTAACGGAGGAGTTTCCTCCTATCCCCTCTTGTAATGCATCCCAATCTGTTAGGGATGCACATGACCGTTGGACAAAGGCCAATGACAAGGCCCGAGTTTATATCTTGGCAAGTTTGTCTAACATCCGGCACGAGGCCCTCAAGTACGTTTATAATGCACGTATGAAGAAAGGCCAATCGGTGAGAGAACATGTTCTCAACTTGATGCTCCAATTCAACGTTGCTGAAATGAACAGCGCGGTCATTGACGAGTAG

Protein sequence

MSSSIVTLLKNEKLTGENYVTWKSNLNTILFIDDIWFVLTEEFPPIPSCNASQSVRDAHDRWTKANDKARVYILASLSNIRHEALKYVYNARMKKGQSVREHVLNLMLQFNVAEMNSAVIDE

Homology

[Close]

BLAST of Clc11G08930 vs. NCBI nr
Match: KAA0063887.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 162.5 bits (410), Expect = 2.2e-36
Identity = 86/151 (56.95%), Postives = 103/151 (68.21%), Query Frame = 0


Query: 1   MSSSIVTLLKNEKLTGENYVTWKSNLNTILFIDDIWFVLTEEFPPIPSCNASQSVRDAHD 60
           MSSSI+ LLK ++LTGENY TWKS LN IL I D+ FVL EE PP P+ NASQSV+DA+D
Sbjct: 1   MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60

Query: 61  RWTKANDKARVYILASLSN-----------------------------IRHEALKYVYNA 120
            WTKANDKA +Y+LASLS+                             I+ EA+KYVYNA
Sbjct: 61  HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120

Query: 121 RMKKGQSVREHVLNLMLQFNVAEMNSAVIDE 123
           RMK+GQSVREHVL +++ FNVAEMN A+ DE
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAEMNKAIFDE 151

[Close]

BLAST of Clc11G08930 vs. NCBI nr
Match: TYK15919.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 162.5 bits (410), Expect = 2.2e-36
Identity = 86/151 (56.95%), Postives = 103/151 (68.21%), Query Frame = 0


Query: 1   MSSSIVTLLKNEKLTGENYVTWKSNLNTILFIDDIWFVLTEEFPPIPSCNASQSVRDAHD 60
           MSSSI+ LLK ++LTGENY TWKS LN IL I D+ FVL EE PP P+ NASQSV+DA+D
Sbjct: 1   MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60

Query: 61  RWTKANDKARVYILASLSN-----------------------------IRHEALKYVYNA 120
            WTKANDKA +Y+LASLS+                             I+ EA+KYVYNA
Sbjct: 61  HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120

Query: 121 RMKKGQSVREHVLNLMLQFNVAEMNSAVIDE 123
           RMK+GQSVREHVL +++ FNVAEMN A+ DE
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAEMNKAIFDE 151

[Close]

BLAST of Clc11G08930 vs. NCBI nr
Match: KAA0026242.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK30712.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 160.6 bits (405), Expect = 8.5e-36
Identity = 85/144 (59.03%), Postives = 100/144 (69.44%), Query Frame = 0


Query: 1   MSSSIVTLLKNEKLTGENYVTWKSNLNTILFIDDIWFVLTEEFPPIPSCNASQSVRDAHD 60
           MSSSI+ LLK ++LTGENY  WKS LN IL I D+ FVL EE PP  + NASQSVRDA+D
Sbjct: 1   MSSSIIALLKKDQLTGENYAMWKSKLNMILVIADLRFVLIEECPPFSTKNASQSVRDAYD 60

Query: 61  RWTKANDKARVYILASLS----------------------NIRHEALKYVYNARMKKGQS 120
           RWTKANDKAR+YILAS+S                       I+ EA+KYVYNARMK+G  
Sbjct: 61  RWTKANDKARLYILASMSGILSKKHEIMDSLREMFGQPSIQIKQEAIKYVYNARMKEGHF 120

Query: 121 VREHVLNLMLQFNVAEMNSAVIDE 123
           VREHVLN+++ FNV +MN AV DE
Sbjct: 121 VREHVLNMIVNFNVEQMNGAVFDE 144

[Close]

BLAST of Clc11G08930 vs. NCBI nr
Match: XP_022157844.1 (uncharacterized protein LOC111024457 [Momordica charantia])

HSP 1 Score: 157.9 bits (398), Expect = 5.5e-35
Identity = 84/151 (55.63%), Postives = 101/151 (66.89%), Query Frame = 0


Query: 1   MSSSIVTLLKNEKLTGENYVTWKSNLNTILFIDDIWFVLTEEFPPIPSCNASQSVRDAHD 60
           M+SSIV LL +EKL G NY TWK+NLNTIL +DD+ FVLTEE P  P+ NA+++VR+A D
Sbjct: 1   MNSSIVQLLASEKLNGVNYSTWKNNLNTILVVDDLRFVLTEECPQTPATNANRNVREAFD 60

Query: 61  RWTKANDKARVYILASL-----------------------------SNIRHEALKYVYNA 120
           RW KANDKARVYILAS+                             S +RHEALKYVYN 
Sbjct: 61  RWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLKAMFGEPSSTLRHEALKYVYNE 120

Query: 121 RMKKGQSVREHVLNLMLQFNVAEMNSAVIDE 123
            MK+G SVREHVL++M+ FN AE+N A IDE
Sbjct: 121 HMKEGTSVREHVLDMMVHFNTAEVNGATIDE 151

[Close]

BLAST of Clc11G08930 vs. NCBI nr
Match: TYJ96755.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 157.5 bits (397), Expect = 7.2e-35
Identity = 73/126 (57.94%), Postives = 100/126 (79.37%), Query Frame = 0


Query: 1   MSSSIVTLLKNEKLTGENYVTWKSNLNTILFIDDIWFVLTEEFPPIPSCNASQSVRDAHD 60
           M+S+ + +L  +KL G NY +WK+ +NT+L IDD+ F L EE P +P+ NA+++VR+A++
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFDLVEECPQVPAANATRTVREAYE 60

Query: 61  RWTKANDKARVYILASLS----NIRHEALKYVYNARMKKGQSVREHVLNLMLQFNVAEMN 120
           RW KAN+KAR YILASLS     I+H+ALKY+YNARM +G S+REHVLN+M+ FN+AEMN
Sbjct: 61  RWAKANEKARAYILASLSEASYQIKHDALKYIYNARMNEGASIREHVLNMMVHFNMAEMN 120

Query: 121 SAVIDE 123
            AVIDE
Sbjct: 121 EAVIDE 126

[Close]

BLAST of Clc11G08930 vs. ExPASy TrEMBL
Match: A0A5D3D0D9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00210 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 1.1e-36
Identity = 86/151 (56.95%), Postives = 103/151 (68.21%), Query Frame = 0


Query: 1   MSSSIVTLLKNEKLTGENYVTWKSNLNTILFIDDIWFVLTEEFPPIPSCNASQSVRDAHD 60
           MSSSI+ LLK ++LTGENY TWKS LN IL I D+ FVL EE PP P+ NASQSV+DA+D
Sbjct: 1   MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60

Query: 61  RWTKANDKARVYILASLSN-----------------------------IRHEALKYVYNA 120
            WTKANDKA +Y+LASLS+                             I+ EA+KYVYNA
Sbjct: 61  HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120

Query: 121 RMKKGQSVREHVLNLMLQFNVAEMNSAVIDE 123
           RMK+GQSVREHVL +++ FNVAEMN A+ DE
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAEMNKAIFDE 151

[Close]

BLAST of Clc11G08930 vs. ExPASy TrEMBL
Match: A0A5A7VA67 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G00110 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 1.1e-36
Identity = 86/151 (56.95%), Postives = 103/151 (68.21%), Query Frame = 0


Query: 1   MSSSIVTLLKNEKLTGENYVTWKSNLNTILFIDDIWFVLTEEFPPIPSCNASQSVRDAHD 60
           MSSSI+ LLK ++LTGENY TWKS LN IL I D+ FVL EE PP P+ NASQSV+DA+D
Sbjct: 1   MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60

Query: 61  RWTKANDKARVYILASLSN-----------------------------IRHEALKYVYNA 120
            WTKANDKA +Y+LASLS+                             I+ EA+KYVYNA
Sbjct: 61  HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120

Query: 121 RMKKGQSVREHVLNLMLQFNVAEMNSAVIDE 123
           RMK+GQSVREHVL +++ FNVAEMN A+ DE
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAEMNKAIFDE 151

[Close]

BLAST of Clc11G08930 vs. ExPASy TrEMBL
Match: A0A5A7SM77 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343G00390 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 4.1e-36
Identity = 85/144 (59.03%), Postives = 100/144 (69.44%), Query Frame = 0


Query: 1   MSSSIVTLLKNEKLTGENYVTWKSNLNTILFIDDIWFVLTEEFPPIPSCNASQSVRDAHD 60
           MSSSI+ LLK ++LTGENY  WKS LN IL I D+ FVL EE PP  + NASQSVRDA+D
Sbjct: 1   MSSSIIALLKKDQLTGENYAMWKSKLNMILVIADLRFVLIEECPPFSTKNASQSVRDAYD 60

Query: 61  RWTKANDKARVYILASLS----------------------NIRHEALKYVYNARMKKGQS 120
           RWTKANDKAR+YILAS+S                       I+ EA+KYVYNARMK+G  
Sbjct: 61  RWTKANDKARLYILASMSGILSKKHEIMDSLREMFGQPSIQIKQEAIKYVYNARMKEGHF 120

Query: 121 VREHVLNLMLQFNVAEMNSAVIDE 123
           VREHVLN+++ FNV +MN AV DE
Sbjct: 121 VREHVLNMIVNFNVEQMNGAVFDE 144

[Close]

BLAST of Clc11G08930 vs. ExPASy TrEMBL
Match: A0A6J1DXQ5 (uncharacterized protein LOC111024457 OS=Momordica charantia OX=3673 GN=LOC111024457 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.7e-35
Identity = 84/151 (55.63%), Postives = 101/151 (66.89%), Query Frame = 0


Query: 1   MSSSIVTLLKNEKLTGENYVTWKSNLNTILFIDDIWFVLTEEFPPIPSCNASQSVRDAHD 60
           M+SSIV LL +EKL G NY TWK+NLNTIL +DD+ FVLTEE P  P+ NA+++VR+A D
Sbjct: 1   MNSSIVQLLASEKLNGVNYSTWKNNLNTILVVDDLRFVLTEECPQTPATNANRNVREAFD 60

Query: 61  RWTKANDKARVYILASL-----------------------------SNIRHEALKYVYNA 120
           RW KANDKARVYILAS+                             S +RHEALKYVYN 
Sbjct: 61  RWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLKAMFGEPSSTLRHEALKYVYNE 120

Query: 121 RMKKGQSVREHVLNLMLQFNVAEMNSAVIDE 123
            MK+G SVREHVL++M+ FN AE+N A IDE
Sbjct: 121 HMKEGTSVREHVLDMMVHFNTAEVNGATIDE 151

[Close]

BLAST of Clc11G08930 vs. ExPASy TrEMBL
Match: A0A5D3DIM3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1359G00090 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 3.5e-35
Identity = 85/151 (56.29%), Postives = 101/151 (66.89%), Query Frame = 0


Query: 1   MSSSIVTLLKNEKLTGENYVTWKSNLNTILFIDDIWFVLTEEFPPIPSCNASQSVRDAHD 60
           MSSSI+ LLK ++LTGENY TWK  LN IL I D+ FVL EE PP PS NASQSV+D +D
Sbjct: 1   MSSSIIALLKKDQLTGENYATWKLKLNMILVITDLRFVLIEECPPFPSQNASQSVKDGYD 60

Query: 61  RWTKANDKARVYILASLSN-----------------------------IRHEALKYVYNA 120
            WTKANDKAR+YILAS+SN                             I+ EA+KYVYNA
Sbjct: 61  CWTKANDKARLYILASMSNILSKKHGIMVTARQIMKSLKEMFGQSSIQIKQEAIKYVYNA 120

Query: 121 RMKKGQSVREHVLNLMLQFNVAEMNSAVIDE 123
           RMK+GQ VRE VLN+++ FN+A+MN AV DE
Sbjct: 121 RMKEGQYVRELVLNMIVNFNLAQMNEAVFDE 151

The following BLAST results are available for this feature:

BLAST of Clc11G08930 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063887.1	2.2e-36	56.95	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK15919.1	2.2e-36	56.95	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0026242.1	8.5e-36	59.03	gag/pol protein [Cucumis melo var. makuwa] >TYK30712.1 gag/pol protein [Cucumis ...	[more]
XP_022157844.1	5.5e-35	55.63	uncharacterized protein LOC111024457 [Momordica charantia]	[more]
TYJ96755.1	7.2e-35	57.94	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Clc11G08930 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc11G08930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D0D9	1.1e-36	56.95	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00210...	[more]
A0A5A7VA67	1.1e-36	56.95	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G0011...	[more]
A0A5A7SM77	4.1e-36	59.03	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343G0039...	[more]
A0A6J1DXQ5	2.7e-35	55.63	uncharacterized protein LOC111024457 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A5D3DIM3	3.5e-35	56.29	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1359G000...	[more]

BLAST of Clc11G08930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 18..80
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 81..121
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 81..121
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 18..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G08930.1	Clc11G08930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding