Clc11G08890 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G08890
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic
Location	ClcChr11: 10828847 .. 10830914 (-)
RNA-Seq Expression	Clc11G08890
Synteny	Clc11G08890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCAATTCTTACTCTCTGACTCTTGGCCAAACACACGTGTGGTGTTCCTAATCTTTTTTCTTAAATTGGAGTTTCTATGTAATTAATCGAGTATGTAGGTGTGAGCATTCTCATCCACAGGAACTAGTGGTAGTGGTTTTGATTTTTTATTCATTTGTTGCCCTTCCAATCCAATCAATTCCATGGCCTCCTCTCCAATTCCCAATTCTCTCCTCTTTCACAGAACCTTCCACTCGCCTACTCGCACATTCCATACATGGCGGGTCTATGCATCTCAAGCTCCCAACAACGATCGCCAAAGACCACCACCGGGGGTCGACACAAGAATTCATTGGCAAAACGAAGAGGAAGGTTGGATTGGAGGCCAGAAAAAGGAGACCAATGATCATAATAATAATAATAATATCTTGGGTCCAAGTTTGGCCGATTTGCTCAACAACTCATCCGATTCTCACTACCAGTACGTGAATAGTGATAATTCTTCGTGTATTCTGCCATTTCTTTTCTTTCTTCTCCAGTTTTTTTCAATTCTTTCCGGGTAGTTCGAGATTTTATTGCAACTGATTAATTATGGTAGTTTGAGTTCTTACTTCTTGGAGTAGTTTTGAAAAATTGGATTAAAAGAGAAGAAAATGTCTAAGCATAAAAGAAAGAAAAGAGAAAAGGGGGAAAAAAAAGCCTAATCCTCATCTTCTACTTCTACCTCTCCCTCCCAACCGTTGACCCCTTTTTCCCCTTTACTGTTCATCTCCTTCTCCGGCGTCAGTCCCTCTCTGCAGCGTGTCTCCCGCGACCTTCAGCGGCTGCGTGCGGTTCTCCCATGTCGACTGCAGGCAGTGGCGTCTTCTTCAAAGGGTTATTTAACGTTGAGTTCCACACTCAAGGACTTAAGTTTTTCTTCTTCTTCTTTTTTTTTTTTTGACTTAAGTTTTTCTTCTTCTTCTTTCTTTTTAAGTACAATAATACAATAATGCCTGGGATGGAGATCCAATTTTCTTTTTATTAAGTACAAATAAGGAAGAAAACCATATCAATTATTGTTAAATTAAGTTCATTTTGGCCAAACAAAACTTTGTCAAATTTGGATAATAATCAATTGTATACTAACATATTGAACATTTATAGGTGATAGATTTTATTACTAATAAAAGCTCCTATTAGCAATAGAGTCCCAGAACTTGATCTAAAATTTGCTATATTTGTAAATTCTTTTTTATTTGGCTATATCGACTTGGTCTAAAATTTGTTATATTTGCTATATGGACTAATATTTTGAACCTAATTGCTATTTTGCCGTAGATAATTATTTGTTGTGGTGGAAGTTGTGTATATATGTGTGTGTGTGGAACAGGTTCTTAGGGGTGGGTGCAGAGGCTGAGCTAGAAGAGATAAAAAGTGCATATCGGAGATTAACAAAAGAATACCATCCAGACACCACCTCTCTCCCCCTAAAAGCTGCGTCCGAGAAATTCATGAAATTGAAACAAGTGTACGAGGTCCTGAGCAACGAAGAAAGCCGCAAGTTCTACGACTGGACGCTTGCTCAAGAAGAGGCAAGCCGCCAAGCTGACAAATTGAGGATTAAATTGGAAGATCCTTACGAGCAGGAGTTGCAAAACTGGAAATCCACTCCAGACATGGTCGATCGCCTTGCAGGAAGGAACATGGAATTGAGTGATCAATCCACCGCAGCTCTTACCGTTGACATCCTTATCATTCTCTTTGCAATAGCCTGTATTGTTTATGTCCTGCTTTTTAAAGAACCATATTATTATTGACATTACATACAAAAGCAGCATACACATTTTATTCAAGAATGTCATATGACTTATATACATCAAACATAAAGTCTATGATATATACTATCCATATACATTATGTTACATCAAAGAGGCTAAAATTGGGAATTGGGAATTGGGAATTTTGTACTGATGACCTCCATTTGGAGGCCCAATTGAAATTTGGCCCACTTCTCGAAAACTAATGACAAGTGGCATTCTGCTTATGTCACCCACATGTGAAAGTTCCCATTGGCCCTTGAGAACCATATGTACTCGATACAGGTTG

mRNA sequence

CTTCAATTCTTACTCTCTGACTCTTGGCCAAACACACGTGTGGTGTTCCTAATCTTTTTTCTTAAATTGGAGTTTCTATGTAATTAATCGAGTATGTAGGTGTGAGCATTCTCATCCACAGGAACTAGTGGTAGTGGTTTTGATTTTTTATTCATTTGTTGCCCTTCCAATCCAATCAATTCCATGGCCTCCTCTCCAATTCCCAATTCTCTCCTCTTTCACAGAACCTTCCACTCGCCTACTCGCACATTCCATACATGGCGGGTCTATGCATCTCAAGCTCCCAACAACGATCGCCAAAGACCACCACCGGGGGTCGACACAAGAATTCATTGGCAAAACGAAGAGGAAGGTTGGATTGGAGGCCAGAAAAAGGAGACCAATGATCATAATAATAATAATAATATCTTGGGTCCAAGTTTGGCCGATTTGCTCAACAACTCATCCGATTCTCACTACCAGTTCTTAGGGGTGGGTGCAGAGGCTGAGCTAGAAGAGATAAAAAGTGCATATCGGAGATTAACAAAAGAATACCATCCAGACACCACCTCTCTCCCCCTAAAAGCTGCGTCCGAGAAATTCATGAAATTGAAACAAGTGTACGAGGTCCTGAGCAACGAAGAAAGCCGCAAGTTCTACGACTGGACGCTTGCTCAAGAAGAGGCAAGCCGCCAAGCTGACAAATTGAGGATTAAATTGGAAGATCCTTACGAGCAGGAGTTGCAAAACTGGAAATCCACTCCAGACATGGTCGATCGCCTTGCAGGAAGGAACATGGAATTGAGTGATCAATCCACCGCAGCTCTTACCGTTGACATCCTTATCATTCTCTTTGCAATAGCCTGTATTGTTTATGTCCTGCTTTTTAAAGAACCATATTATTATTGACATTACATACAAAAGCAGCATACACATTTTATTCAAGAATGTCATATGACTTATATACATCAAACATAAAGTCTATGATATATACTATCCATATACATTATGTTACATCAAAGAGGCTAAAATTGGGAATTGGGAATTGGGAATTTTGTACTGATGACCTCCATTTGGAGGCCCAATTGAAATTTGGCCCACTTCTCGAAAACTAATGACAAGTGGCATTCTGCTTATGTCACCCACATGTGAAAGTTCCCATTGGCCCTTGAGAACCATATGTACTCGATACAGGTTG

Coding sequence (CDS)

ATGGCCTCCTCTCCAATTCCCAATTCTCTCCTCTTTCACAGAACCTTCCACTCGCCTACTCGCACATTCCATACATGGCGGGTCTATGCATCTCAAGCTCCCAACAACGATCGCCAAAGACCACCACCGGGGGTCGACACAAGAATTCATTGGCAAAACGAAGAGGAAGGTTGGATTGGAGGCCAGAAAAAGGAGACCAATGATCATAATAATAATAATAATATCTTGGGTCCAAGTTTGGCCGATTTGCTCAACAACTCATCCGATTCTCACTACCAGTTCTTAGGGGTGGGTGCAGAGGCTGAGCTAGAAGAGATAAAAAGTGCATATCGGAGATTAACAAAAGAATACCATCCAGACACCACCTCTCTCCCCCTAAAAGCTGCGTCCGAGAAATTCATGAAATTGAAACAAGTGTACGAGGTCCTGAGCAACGAAGAAAGCCGCAAGTTCTACGACTGGACGCTTGCTCAAGAAGAGGCAAGCCGCCAAGCTGACAAATTGAGGATTAAATTGGAAGATCCTTACGAGCAGGAGTTGCAAAACTGGAAATCCACTCCAGACATGGTCGATCGCCTTGCAGGAAGGAACATGGAATTGAGTGATCAATCCACCGCAGCTCTTACCGTTGACATCCTTATCATTCTCTTTGCAATAGCCTGTATTGTTTATGTCCTGCTTTTTAAAGAACCATATTATTATTGA

Protein sequence

MASSPIPNSLLFHRTFHSPTRTFHTWRVYASQAPNNDRQRPPPGVDTRIHWQNEEEGWIGGQKKETNDHNNNNNILGPSLADLLNNSSDSHYQFLGVGAEAELEEIKSAYRRLTKEYHPDTTSLPLKAASEKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLEDPYEQELQNWKSTPDMVDRLAGRNMELSDQSTAALTVDILIILFAIACIVYVLLFKEPYYY

Homology

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BLAST of Clc11G08890 vs. NCBI nr
Match: XP_008462782.1 (PREDICTED: NAD(P)H-quinone oxidoreductase subunit T, chloroplastic [Cucumis melo] >TYJ99021.1 NAD(P)H-quinone oxidoreductase subunit T [Cucumis melo var. makuwa])

HSP 1 Score: 420.6 bits (1080), Expect = 8.7e-114
Identity = 210/234 (89.74%), Postives = 223/234 (95.30%), Query Frame = 0


Query: 1   MASSPIPNSLLFHRTFHSPTRTFHTWRVYASQAPNNDRQRPPPGVDTRIHWQNEEEGWIG 60
           MASSP PNSLLFH+TFHSP   F TWRVYA+QAPNNDR+RPPPGVDTRIHWQNEEEGWIG
Sbjct: 1   MASSPFPNSLLFHKTFHSPAPAFRTWRVYAAQAPNNDRRRPPPGVDTRIHWQNEEEGWIG 60

Query: 61  GQKKETNDHNN-NNNILGPSLADLLNNSSDSHYQFLGVGAEAELEEIKSAYRRLTKEYHP 120
           G+KKE+ND NN +NN+LGPSLADLLNNSSDSHYQFLGVGAEAE+EEIKSAYRRL+KEYHP
Sbjct: 61  GKKKESNDQNNESNNMLGPSLADLLNNSSDSHYQFLGVGAEAEVEEIKSAYRRLSKEYHP 120

Query: 121 DTTSLPLKAASEKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLEDPYEQE 180
           DTTSLPLK ASEKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLEDPYEQE
Sbjct: 121 DTTSLPLKVASEKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLEDPYEQE 180

Query: 181 LQNWKSTPDMVDRLAGRNMELSDQSTAALTVDILIILFAIACIVYVLLFKEPYY 234
           LQNW+STPDMVDRL GRNMELSDQ+T ALT+DI IILFAIACIVYVL+FKEPYY
Sbjct: 181 LQNWQSTPDMVDRLGGRNMELSDQATTALTLDIFIILFAIACIVYVLIFKEPYY 234

[Close]

BLAST of Clc11G08890 vs. NCBI nr
Match: XP_038893780.1 (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic [Benincasa hispida])

HSP 1 Score: 409.5 bits (1051), Expect = 2.0e-110
Identity = 210/235 (89.36%), Postives = 218/235 (92.77%), Query Frame = 0


Query: 1   MASSPIPNSLLFHRTFHSPTRTFHTWRVYASQAPNNDRQ-RPPPGVDTRIHWQNEEEGWI 60
           MAS PIPNSLLFH+TFHS  RTF +WRVYASQAPNND Q RPPPGVDTRIHWQN+EEGWI
Sbjct: 1   MASPPIPNSLLFHKTFHSSARTFRSWRVYASQAPNNDPQRRPPPGVDTRIHWQNQEEGWI 60

Query: 61  GGQKKETNDHNNNNNILGPSLADLLNNSSDSHYQFLGVGAEAELEEIKSAYRRLTKEYHP 120
           GG KKET  H+N    LGPSLADLLNNSSDSHYQFLGVGAEAELEEIKSAYRRL+KEYHP
Sbjct: 61  GGHKKETKVHDNKT--LGPSLADLLNNSSDSHYQFLGVGAEAELEEIKSAYRRLSKEYHP 120

Query: 121 DTTSLPLKAASEKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLEDPYEQE 180
           DTTSLPLK ASEKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQA+KLRIKLEDPYEQE
Sbjct: 121 DTTSLPLKVASEKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQAEKLRIKLEDPYEQE 180

Query: 181 LQNWKSTPDMVDRLAGRNMELSDQSTAALTVDILIILFAIACIVYVLLFKEPYYY 235
           LQNWKSTPDMVDRL GRNMELSDQ+T ALT+DI IILFAIACIVYVLLFKEPYYY
Sbjct: 181 LQNWKSTPDMVDRLGGRNMELSDQATTALTLDIFIILFAIACIVYVLLFKEPYYY 233

[Close]

BLAST of Clc11G08890 vs. NCBI nr
Match: XP_004137622.1 (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic isoform X1 [Cucumis sativus] >KGN64159.1 hypothetical protein Csa_013885 [Cucumis sativus])

HSP 1 Score: 407.5 bits (1046), Expect = 7.6e-110
Identity = 205/234 (87.61%), Postives = 219/234 (93.59%), Query Frame = 0


Query: 1   MASSPIPNSLLFHRTFHSPTRTFHTWRVYASQAPNNDRQRPPPGVDTRIHWQNEEEGWIG 60
           MAS P PNSLLFH+TFHS   TF TWRVYA+QAPNNDR+RPPPGVDTRIHWQNEEEGWIG
Sbjct: 1   MASPPFPNSLLFHKTFHSSAPTFRTWRVYAAQAPNNDRRRPPPGVDTRIHWQNEEEGWIG 60

Query: 61  GQKKETNDHNN-NNNILGPSLADLLNNSSDSHYQFLGVGAEAELEEIKSAYRRLTKEYHP 120
            +KKE+ND NN +NN+LGPSLADLLNNSSDSHYQFLGV AEAE+EEIKSAYRRL+KEYHP
Sbjct: 61  RKKKESNDQNNVSNNMLGPSLADLLNNSSDSHYQFLGVDAEAEVEEIKSAYRRLSKEYHP 120

Query: 121 DTTSLPLKAASEKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLEDPYEQE 180
           DTTSLPLK ASEKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLR+KLEDPYEQE
Sbjct: 121 DTTSLPLKVASEKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRMKLEDPYEQE 180

Query: 181 LQNWKSTPDMVDRLAGRNMELSDQSTAALTVDILIILFAIACIVYVLLFKEPYY 234
           LQNW STPDMVDRL GRN+ELSDQ++ ALT+DI IILFAIACIVYVLLFKEPYY
Sbjct: 181 LQNWVSTPDMVDRLGGRNLELSDQASTALTLDIFIILFAIACIVYVLLFKEPYY 234

[Close]

BLAST of Clc11G08890 vs. NCBI nr
Match: KAG7033427.1 (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 397.5 bits (1020), Expect = 7.9e-107
Identity = 207/241 (85.89%), Postives = 217/241 (90.04%), Query Frame = 0


Query: 1   MASSPIPNSLLFHRTFHSPTRTFHTWRVYASQAPNNDRQRPPPGVDTRIHWQNEEEGWIG 60
           MAS  IPNSL  +RTFHSP RTF TW VYASQ PNN RQRPPPGVDTRIHWQN+EEGWIG
Sbjct: 244 MASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNN-RQRPPPGVDTRIHWQNDEEGWIG 303

Query: 61  G--------QKKETNDHNNNNNILGPSLADLLNNSSDSHYQFLGVGAEAELEEIKSAYRR 120
           G         +KE N +NNNNN LGPSL DLLNNSSDSHYQFLGVGAEA+LEEIKSAYRR
Sbjct: 304 GPTPSQSRRDQKEQN-NNNNNNALGPSLTDLLNNSSDSHYQFLGVGAEADLEEIKSAYRR 363

Query: 121 LTKEYHPDTTSLPLKAASEKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKL 180
           L+KEYHPDTTSLPLKAAS+KFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKL
Sbjct: 364 LSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKL 423

Query: 181 EDPYEQELQNWKSTPDMVDRLAGRNMELSDQSTAALTVDILIILFAIACIVYVLLFKEPY 234
           EDPYEQELQNWKSTPDMVDRLAGRNM+LSDQ+T ALT+DILIILFAI CIVYVLLFKEPY
Sbjct: 424 EDPYEQELQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPY 482

[Close]

BLAST of Clc11G08890 vs. NCBI nr
Match: KAG6602740.1 (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 397.5 bits (1020), Expect = 7.9e-107
Identity = 207/241 (85.89%), Postives = 217/241 (90.04%), Query Frame = 0


Query: 1   MASSPIPNSLLFHRTFHSPTRTFHTWRVYASQAPNNDRQRPPPGVDTRIHWQNEEEGWIG 60
           MAS  IPNSL  +RTFHSP RTF TW VYASQ PNN RQRPPPGVDTRIHWQN+EEGWIG
Sbjct: 235 MASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNN-RQRPPPGVDTRIHWQNDEEGWIG 294

Query: 61  G--------QKKETNDHNNNNNILGPSLADLLNNSSDSHYQFLGVGAEAELEEIKSAYRR 120
           G         +KE N +NNNNN LGPSL DLLNNSSDSHYQFLGVGAEA+LEEIKSAYRR
Sbjct: 295 GPTPSQSRRDQKEQN-NNNNNNALGPSLTDLLNNSSDSHYQFLGVGAEADLEEIKSAYRR 354

Query: 121 LTKEYHPDTTSLPLKAASEKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKL 180
           L+KEYHPDTTSLPLKAAS+KFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKL
Sbjct: 355 LSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKL 414

Query: 181 EDPYEQELQNWKSTPDMVDRLAGRNMELSDQSTAALTVDILIILFAIACIVYVLLFKEPY 234
           EDPYEQELQNWKSTPDMVDRLAGRNM+LSDQ+T ALT+DILIILFAI CIVYVLLFKEPY
Sbjct: 415 EDPYEQELQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPY 473

[Close]

BLAST of Clc11G08890 vs. ExPASy Swiss-Prot
Match: Q9SMS0 (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ndhT PE=1 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 4.7e-70
Identity = 134/209 (64.11%), Postives = 169/209 (80.86%), Query Frame = 0


Query: 27  RVYASQAPNNDRQRPPPGVDTRIHWQNEEEGWIGGQK--KETNDHNNNNNILGPSLADLL 86
           R+YASQ P     +P PGVDTRIHW++ +EGWIGG+    ++ D +  N +     A+L+
Sbjct: 42  RIYASQGPTKP-SKPSPGVDTRIHWESPDEGWIGGRSDPAKSVDEDKTNLLSDEKFAELI 101

Query: 87  NNSSDSHYQFLGVGAEAELEEIKSAYRRLTKEYHPDTTSLPLKAASEKFMKLKQVYEVLS 146
            +S DSHYQFLGV  +A+LEEIKSAYRRL+KEYHPDTTSLPLK ASEKFMKL++VY VLS
Sbjct: 102 KDSFDSHYQFLGVSTDADLEEIKSAYRRLSKEYHPDTTSLPLKTASEKFMKLREVYNVLS 161

Query: 147 NEESRKFYDWTLAQEEASRQADKLRIKLEDPYEQELQNWKSTPDMVDRLAGRNMELSDQS 206
           +EE+R+FYDWTLAQE ASRQA+K+R+KLEDP EQ+ + ++S PDMVDRL GRNMELSDQ+
Sbjct: 162 DEETRRFYDWTLAQEVASRQAEKMRMKLEDPKEQDFRGYESIPDMVDRLGGRNMELSDQA 221

Query: 207 TAALTVDILIILFAIACIVYVLLFKEPYY 234
             ALT DILI+LFA+ CI +V++FK+P Y
Sbjct: 222 MTALTFDILIVLFAVCCIAFVIVFKDPSY 249

[Close]

BLAST of Clc11G08890 vs. ExPASy Swiss-Prot
Match: Q75VW3 (Chaperone protein DnaJ OS=Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6) OX=608538 GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.1e-10
Identity = 41/97 (42.27%), Postives = 57/97 (58.76%), Query Frame = 0


Query: 91  HYQFLGVGAEAELEEIKSAYRRLTKEYHPDTTSLPLKAASEKFMKLKQVYEVLSNEESRK 150
           +YQ LGV  +A  EEIK AYRRL KEYHPD ++   + ASEKF ++ + Y +LS+EE RK
Sbjct: 6   YYQILGVSKDATAEEIKKAYRRLAKEYHPDISA--DENASEKFKEINEAYHILSDEERRK 65

Query: 151 FYDWTLAQEEASRQADKLRIKLEDPYEQELQNWKSTP 188
            YD  L   +     D +   ++D  E   Q  + +P
Sbjct: 66  EYDRILKSGDEKSYRDFMEY-IQDFLESIWQGMRRSP 99

[Close]

BLAST of Clc11G08890 vs. ExPASy Swiss-Prot
Match: Q5KWZ8 (Chaperone protein DnaJ OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.2e-10
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 91  HYQFLGVGAEAELEEIKSAYRRLTKEYHPDTTSLPLKAASEKFMKLKQVYEVLSNEESRK 150
           +Y+ LGV   A  +EIK AYR+L+K+YHPD    P   A+EKF ++K+ YEVLS++E R 
Sbjct: 6   YYEILGVSKNATKDEIKKAYRKLSKQYHPDVNKAP--DAAEKFKEIKEAYEVLSDDEKRA 65

Query: 151 FYD 154
            YD
Sbjct: 66  RYD 66

[Close]

BLAST of Clc11G08890 vs. ExPASy Swiss-Prot
Match: Q45552 (Chaperone protein DnaJ OS=Geobacillus stearothermophilus OX=1422 GN=dnaJ PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.2e-10
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 91  HYQFLGVGAEAELEEIKSAYRRLTKEYHPDTTSLPLKAASEKFMKLKQVYEVLSNEESRK 150
           +Y+ LGV   A  EEIK AYR+L+K+YHPD    P   A+EKF ++K+ YEVLS+++ R 
Sbjct: 6   YYEILGVSKNATKEEIKKAYRKLSKKYHPDVNKEP--DAAEKFKEIKEAYEVLSDDQKRA 65

Query: 151 FYD 154
            YD
Sbjct: 66  HYD 66

[Close]

BLAST of Clc11G08890 vs. ExPASy Swiss-Prot
Match: C5D4U0 (Chaperone protein DnaJ OS=Geobacillus sp. (strain WCH70) OX=471223 GN=dnaJ PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.5e-10
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 91  HYQFLGVGAEAELEEIKSAYRRLTKEYHPDTTSLPLKAASEKFMKLKQVYEVLSNEESRK 150
           +Y+ LGV   A  EEIK AYR+L+K+YHPD    P   A+EKF ++K+ YEVLS+++ R 
Sbjct: 6   YYEILGVSKNATKEEIKKAYRKLSKKYHPDINKEP--DAAEKFKEIKEAYEVLSDDQKRA 65

Query: 151 FYD 154
            YD
Sbjct: 66  HYD 66

[Close]

BLAST of Clc11G08890 vs. ExPASy TrEMBL
Match: A0A5D3BJW7 (NAD(P)H-quinone oxidoreductase subunit T OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002250 PE=4 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 4.2e-114
Identity = 210/234 (89.74%), Postives = 223/234 (95.30%), Query Frame = 0


Query: 1   MASSPIPNSLLFHRTFHSPTRTFHTWRVYASQAPNNDRQRPPPGVDTRIHWQNEEEGWIG 60
           MASSP PNSLLFH+TFHSP   F TWRVYA+QAPNNDR+RPPPGVDTRIHWQNEEEGWIG
Sbjct: 1   MASSPFPNSLLFHKTFHSPAPAFRTWRVYAAQAPNNDRRRPPPGVDTRIHWQNEEEGWIG 60

Query: 61  GQKKETNDHNN-NNNILGPSLADLLNNSSDSHYQFLGVGAEAELEEIKSAYRRLTKEYHP 120
           G+KKE+ND NN +NN+LGPSLADLLNNSSDSHYQFLGVGAEAE+EEIKSAYRRL+KEYHP
Sbjct: 61  GKKKESNDQNNESNNMLGPSLADLLNNSSDSHYQFLGVGAEAEVEEIKSAYRRLSKEYHP 120

Query: 121 DTTSLPLKAASEKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLEDPYEQE 180
           DTTSLPLK ASEKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLEDPYEQE
Sbjct: 121 DTTSLPLKVASEKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLEDPYEQE 180

Query: 181 LQNWKSTPDMVDRLAGRNMELSDQSTAALTVDILIILFAIACIVYVLLFKEPYY 234
           LQNW+STPDMVDRL GRNMELSDQ+T ALT+DI IILFAIACIVYVL+FKEPYY
Sbjct: 181 LQNWQSTPDMVDRLGGRNMELSDQATTALTLDIFIILFAIACIVYVLIFKEPYY 234

[Close]

BLAST of Clc11G08890 vs. ExPASy TrEMBL
Match: A0A1S3CHS6 (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501040 PE=4 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 4.2e-114
Identity = 210/234 (89.74%), Postives = 223/234 (95.30%), Query Frame = 0


Query: 1   MASSPIPNSLLFHRTFHSPTRTFHTWRVYASQAPNNDRQRPPPGVDTRIHWQNEEEGWIG 60
           MASSP PNSLLFH+TFHSP   F TWRVYA+QAPNNDR+RPPPGVDTRIHWQNEEEGWIG
Sbjct: 1   MASSPFPNSLLFHKTFHSPAPAFRTWRVYAAQAPNNDRRRPPPGVDTRIHWQNEEEGWIG 60

Query: 61  GQKKETNDHNN-NNNILGPSLADLLNNSSDSHYQFLGVGAEAELEEIKSAYRRLTKEYHP 120
           G+KKE+ND NN +NN+LGPSLADLLNNSSDSHYQFLGVGAEAE+EEIKSAYRRL+KEYHP
Sbjct: 61  GKKKESNDQNNESNNMLGPSLADLLNNSSDSHYQFLGVGAEAEVEEIKSAYRRLSKEYHP 120

Query: 121 DTTSLPLKAASEKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLEDPYEQE 180
           DTTSLPLK ASEKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLEDPYEQE
Sbjct: 121 DTTSLPLKVASEKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLEDPYEQE 180

Query: 181 LQNWKSTPDMVDRLAGRNMELSDQSTAALTVDILIILFAIACIVYVLLFKEPYY 234
           LQNW+STPDMVDRL GRNMELSDQ+T ALT+DI IILFAIACIVYVL+FKEPYY
Sbjct: 181 LQNWQSTPDMVDRLGGRNMELSDQATTALTLDIFIILFAIACIVYVLIFKEPYY 234

[Close]

BLAST of Clc11G08890 vs. ExPASy TrEMBL
Match: A0A0A0LT25 (J domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G042670 PE=4 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 3.7e-110
Identity = 205/234 (87.61%), Postives = 219/234 (93.59%), Query Frame = 0


Query: 1   MASSPIPNSLLFHRTFHSPTRTFHTWRVYASQAPNNDRQRPPPGVDTRIHWQNEEEGWIG 60
           MAS P PNSLLFH+TFHS   TF TWRVYA+QAPNNDR+RPPPGVDTRIHWQNEEEGWIG
Sbjct: 1   MASPPFPNSLLFHKTFHSSAPTFRTWRVYAAQAPNNDRRRPPPGVDTRIHWQNEEEGWIG 60

Query: 61  GQKKETNDHNN-NNNILGPSLADLLNNSSDSHYQFLGVGAEAELEEIKSAYRRLTKEYHP 120
            +KKE+ND NN +NN+LGPSLADLLNNSSDSHYQFLGV AEAE+EEIKSAYRRL+KEYHP
Sbjct: 61  RKKKESNDQNNVSNNMLGPSLADLLNNSSDSHYQFLGVDAEAEVEEIKSAYRRLSKEYHP 120

Query: 121 DTTSLPLKAASEKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLEDPYEQE 180
           DTTSLPLK ASEKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLR+KLEDPYEQE
Sbjct: 121 DTTSLPLKVASEKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRMKLEDPYEQE 180

Query: 181 LQNWKSTPDMVDRLAGRNMELSDQSTAALTVDILIILFAIACIVYVLLFKEPYY 234
           LQNW STPDMVDRL GRN+ELSDQ++ ALT+DI IILFAIACIVYVLLFKEPYY
Sbjct: 181 LQNWVSTPDMVDRLGGRNLELSDQASTALTLDIFIILFAIACIVYVLLFKEPYY 234

[Close]

BLAST of Clc11G08890 vs. ExPASy TrEMBL
Match: A0A6J1HJ56 (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111464036 PE=4 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 3.8e-107
Identity = 207/241 (85.89%), Postives = 217/241 (90.04%), Query Frame = 0


Query: 1   MASSPIPNSLLFHRTFHSPTRTFHTWRVYASQAPNNDRQRPPPGVDTRIHWQNEEEGWIG 60
           MAS  IPNSL  +RTFHSP RTF TW VYASQ PNN RQRPPPGVDTRIHWQN+EEGWIG
Sbjct: 1   MASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNN-RQRPPPGVDTRIHWQNDEEGWIG 60

Query: 61  G--------QKKETNDHNNNNNILGPSLADLLNNSSDSHYQFLGVGAEAELEEIKSAYRR 120
           G         +KE N +NNNNN LGPSL DLLNNSSDSHYQFLGVGAEA+LEEIKSAYRR
Sbjct: 61  GPTPSQSRRDQKEQN-NNNNNNALGPSLTDLLNNSSDSHYQFLGVGAEADLEEIKSAYRR 120

Query: 121 LTKEYHPDTTSLPLKAASEKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKL 180
           L+KEYHPDTTSLPLKAAS+KFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKL
Sbjct: 121 LSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKL 180

Query: 181 EDPYEQELQNWKSTPDMVDRLAGRNMELSDQSTAALTVDILIILFAIACIVYVLLFKEPY 234
           EDPYEQELQNWKSTPDMVDRLAGRNM+LSDQ+T ALT+DILIILFAI CIVYVLLFKEPY
Sbjct: 181 EDPYEQELQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPY 239

[Close]

BLAST of Clc11G08890 vs. ExPASy TrEMBL
Match: A0A6J1JM84 (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111487152 PE=4 SV=1)

HSP 1 Score: 392.9 bits (1008), Expect = 9.4e-106
Identity = 201/234 (85.90%), Postives = 212/234 (90.60%), Query Frame = 0


Query: 3   SSPIPNSLLFHRTFHSPTRTFHTWRVYASQAPNNDRQRPPPGVDTRIHWQNEEEGWIGG- 62
           +SPIPNSL  +RTFHSP RTF TW VYASQ PNN RQRPPPGVDTRIHWQN+EEGWIGG 
Sbjct: 4   ASPIPNSLFLNRTFHSPARTFRTWPVYASQPPNN-RQRPPPGVDTRIHWQNDEEGWIGGP 63

Query: 63  --QKKETNDHNNNNNILGPSLADLLNNSSDSHYQFLGVGAEAELEEIKSAYRRLTKEYHP 122
              +   +    NNN LGPS ADLLNNSSDSHYQFLGVGAEA+LEEIKSAYRRL+KEYHP
Sbjct: 64  TPSQSRRDQKEQNNNALGPSFADLLNNSSDSHYQFLGVGAEADLEEIKSAYRRLSKEYHP 123

Query: 123 DTTSLPLKAASEKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLEDPYEQE 182
           DTTSLPLKAAS+KFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLEDPYEQE
Sbjct: 124 DTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLEDPYEQE 183

Query: 183 LQNWKSTPDMVDRLAGRNMELSDQSTAALTVDILIILFAIACIVYVLLFKEPYY 234
           LQNWKSTPDMVDRLAGRNM+LSDQ+T ALT+DILIILFAI CIVYVLLFKEPYY
Sbjct: 184 LQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY 236

[Close]

BLAST of Clc11G08890 vs. TAIR 10
Match: AT4G09350.1 (Chaperone DnaJ-domain superfamily protein )

HSP 1 Score: 265.8 bits (678), Expect = 3.3e-71
Identity = 134/209 (64.11%), Postives = 169/209 (80.86%), Query Frame = 0


Query: 27  RVYASQAPNNDRQRPPPGVDTRIHWQNEEEGWIGGQK--KETNDHNNNNNILGPSLADLL 86
           R+YASQ P     +P PGVDTRIHW++ +EGWIGG+    ++ D +  N +     A+L+
Sbjct: 42  RIYASQGPTKP-SKPSPGVDTRIHWESPDEGWIGGRSDPAKSVDEDKTNLLSDEKFAELI 101

Query: 87  NNSSDSHYQFLGVGAEAELEEIKSAYRRLTKEYHPDTTSLPLKAASEKFMKLKQVYEVLS 146
            +S DSHYQFLGV  +A+LEEIKSAYRRL+KEYHPDTTSLPLK ASEKFMKL++VY VLS
Sbjct: 102 KDSFDSHYQFLGVSTDADLEEIKSAYRRLSKEYHPDTTSLPLKTASEKFMKLREVYNVLS 161

Query: 147 NEESRKFYDWTLAQEEASRQADKLRIKLEDPYEQELQNWKSTPDMVDRLAGRNMELSDQS 206
           +EE+R+FYDWTLAQE ASRQA+K+R+KLEDP EQ+ + ++S PDMVDRL GRNMELSDQ+
Sbjct: 162 DEETRRFYDWTLAQEVASRQAEKMRMKLEDPKEQDFRGYESIPDMVDRLGGRNMELSDQA 221

Query: 207 TAALTVDILIILFAIACIVYVLLFKEPYY 234
             ALT DILI+LFA+ CI +V++FK+P Y
Sbjct: 222 MTALTFDILIVLFAVCCIAFVIVFKDPSY 249

[Close]

BLAST of Clc11G08890 vs. TAIR 10
Match: AT1G80030.1 (Molecular chaperone Hsp40/DnaJ family protein )

HSP 1 Score: 63.5 bits (153), Expect = 2.5e-10
Identity = 32/67 (47.76%), Postives = 43/67 (64.18%), Query Frame = 0


Query: 87  SSDSHYQFLGVGAEAELEEIKSAYRRLTKEYHPDTTSLPLKAASEKFMKLKQVYEVLSNE 146
           +S  +Y  LGV   A  +EIK+AYRRL ++YHPD    P   A+EKF ++   YEVLS+E
Sbjct: 72  TSGDYYATLGVSKSANNKEIKAAYRRLARQYHPDVNKEP--GATEKFKEISAAYEVLSDE 131

Query: 147 ESRKFYD 154
           + R  YD
Sbjct: 132 QKRALYD 136

[Close]

BLAST of Clc11G08890 vs. TAIR 10
Match: AT1G80030.3 (Molecular chaperone Hsp40/DnaJ family protein )

HSP 1 Score: 63.5 bits (153), Expect = 2.5e-10
Identity = 32/67 (47.76%), Postives = 43/67 (64.18%), Query Frame = 0


Query: 87  SSDSHYQFLGVGAEAELEEIKSAYRRLTKEYHPDTTSLPLKAASEKFMKLKQVYEVLSNE 146
           +S  +Y  LGV   A  +EIK+AYRRL ++YHPD    P   A+EKF ++   YEVLS+E
Sbjct: 72  TSGDYYATLGVSKSANNKEIKAAYRRLARQYHPDVNKEP--GATEKFKEISAAYEVLSDE 131

Query: 147 ESRKFYD 154
           + R  YD
Sbjct: 132 QKRALYD 136

[Close]

BLAST of Clc11G08890 vs. TAIR 10
Match: AT1G80030.2 (Molecular chaperone Hsp40/DnaJ family protein )

HSP 1 Score: 63.5 bits (153), Expect = 2.5e-10
Identity = 32/67 (47.76%), Postives = 43/67 (64.18%), Query Frame = 0


Query: 87  SSDSHYQFLGVGAEAELEEIKSAYRRLTKEYHPDTTSLPLKAASEKFMKLKQVYEVLSNE 146
           +S  +Y  LGV   A  +EIK+AYRRL ++YHPD    P   A+EKF ++   YEVLS+E
Sbjct: 72  TSGDYYATLGVSKSANNKEIKAAYRRLARQYHPDVNKEP--GATEKFKEISAAYEVLSDE 131

Query: 147 ESRKFYD 154
           + R  YD
Sbjct: 132 QKRALYD 136

[Close]

BLAST of Clc11G08890 vs. TAIR 10
Match: AT3G17830.1 (Molecular chaperone Hsp40/DnaJ family protein )

HSP 1 Score: 63.2 bits (152), Expect = 3.3e-10
Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 91  HYQFLGVGAEAELEEIKSAYRRLTKEYHPDTTSLPLKAASEKFMKLKQVYEVLSNEESRK 150
           HY  L V   A L+EIKS+YR+L ++YHPD    P   A +KF ++   YEVLS+EE R 
Sbjct: 64  HYSTLNVNRNATLQEIKSSYRKLARKYHPDMNKNP--GAEDKFKQISAAYEVLSDEEKRS 123

Query: 151 FYD 154
            YD
Sbjct: 124 AYD 124

The following BLAST results are available for this feature:

BLAST of Clc11G08890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008462782.1	8.7e-114	89.74	PREDICTED: NAD(P)H-quinone oxidoreductase subunit T, chloroplastic [Cucumis melo...	[more]
XP_038893780.1	2.0e-110	89.36	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic [Benincasa hispida]	[more]
XP_004137622.1	7.6e-110	87.61	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic isoform X1 [Cucumis sati...	[more]
KAG7033427.1	7.9e-107	85.89	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic [Cucurbita argyrosperma ...	[more]
KAG6602740.1	7.9e-107	85.89	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic, partial [Cucurbita argy...	[more]

BLAST of Clc11G08890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SMS0	4.7e-70	64.11	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Arabidopsis thaliana ...	[more]
Q75VW3	1.1e-10	42.27	Chaperone protein DnaJ OS=Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12...	[more]
Q5KWZ8	3.2e-10	50.79	Chaperone protein DnaJ OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=...	[more]
Q45552	4.2e-10	50.79	Chaperone protein DnaJ OS=Geobacillus stearothermophilus OX=1422 GN=dnaJ PE=3 SV...	[more]
C5D4U0	5.5e-10	50.79	Chaperone protein DnaJ OS=Geobacillus sp. (strain WCH70) OX=471223 GN=dnaJ PE=3 ...	[more]

BLAST of Clc11G08890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BJW7	4.2e-114	89.74	NAD(P)H-quinone oxidoreductase subunit T OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3CHS6	4.2e-114	89.74	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Cucumis melo OX=3656 ...	[more]
A0A0A0LT25	3.7e-110	87.61	J domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G042670 PE=4 SV=1	[more]
A0A6J1HJ56	3.8e-107	85.89	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Cucurbita moschata OX...	[more]
A0A6J1JM84	9.4e-106	85.90	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Cucurbita maxima OX=3...	[more]

BLAST of Clc11G08890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G09350.1	3.3e-71	64.11	Chaperone DnaJ-domain superfamily protein	[more]
AT1G80030.1	2.5e-10	47.76	Molecular chaperone Hsp40/DnaJ family protein	[more]
AT1G80030.3	2.5e-10	47.76	Molecular chaperone Hsp40/DnaJ family protein	[more]
AT1G80030.2	2.5e-10	47.76	Molecular chaperone Hsp40/DnaJ family protein	[more]
AT3G17830.1	3.3e-10	49.21	Molecular chaperone Hsp40/DnaJ family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 96..116
None	No IPR available	COILS	Coil	Coil	coord: 126..146
IPR001623	DnaJ domain	PRINTS	PR00625	JDOMAIN	coord: 110..125 score: 42.77 coord: 92..110 score: 47.7 coord: 128..148 score: 36.85
IPR001623	DnaJ domain	SMART	SM00271	dnaj_3	coord: 89..148 e-value: 7.2E-17 score: 72.0
IPR001623	DnaJ domain	PFAM	PF00226	DnaJ	coord: 91..153 e-value: 2.0E-19 score: 69.5
IPR001623	DnaJ domain	PROSITE	PS50076	DNAJ_2	coord: 90..156 score: 17.983908
IPR001623	DnaJ domain	CDD	cd06257	DnaJ	coord: 91..145 e-value: 7.09265E-16 score: 67.5705
IPR036869	Chaperone J-domain superfamily	GENE3D	1.10.287.110	DnaJ domain	coord: 79..177 e-value: 3.8E-20 score: 74.0
IPR036869	Chaperone J-domain superfamily	SUPERFAMILY	46565	Chaperone J-domain	coord: 85..156
IPR044618	NAD(P)H-quinone oxidoreductase subunit T-like	PANTHER	PTHR45283	NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT T, CHLOROPLASTIC	coord: 4..232
IPR018253	DnaJ domain, conserved site	PROSITE	PS00636	DNAJ_1	coord: 133..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G08890.1	Clc11G08890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)