Clc11G08830 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGCTTTGGTGTTGGACCGTGAAGTCACGGAAGTTGAGAGCAATTGCACGGGAGAATTTTATTTTATTCCCGTTGGGAAATTCTGTTTACAAGTGTTGTTCTAACGGAGGTGTCAAAGGGGATCCCAGAACAGGGAAAATCGCTTCTATTCTTTGTGCAGTTTGTCCATGGACTAATCCTTGTGTACAACAAAGGCATCATTTCGCCAAAGACGTGTATGCATTACACCAAGTGGTTGGACTTTTAATTTATTTTTCTGTTCAATAGTCAGTAAGACATTTCATTTTTTTAGGTCAAACAGTATGTGATGGTAAAGATTCAAATCTTTGACTTTTTGTTTGAGGTCAACATGCCTTAACCCCAAGTTCAAGATGACAGTGGTAGTGGAAGCTTTTTCAAAATAAGTATTGTATTATGAATAAACTGGAAGGAGCTTGAACATATGACTCGTCGAGTTACTAAATGCTTAATTATTTGAGCTATGCCAAATTTGAGAAATTAAAGAGTTTGTACTCTGGTACCATGTACAATAAAAGAAAGAAAAATATTTGCTTGGAAATTATGTGAAAAGCTCGGTGCAGAGCATATCAATTGGTATTGATATTTATAGATAACAGACGACCACGTGTCAGAAAAGTACAAGGCAAACATATAACAGAAAAGATTATCCAAAAAATACAAGTAAAAGAAAGGAAAGTACAATAGAAATTACTGAGGTAAAATTATTCACTGCTCATGTTTTCAAGAAAAAAAAGACATACTTATTATCCCGTGCATATTTGCCTTGTTTTAACAATAGCAAGCCAGTGTATTTCATTTTAGTTGCTAGCCTTGACTAGATACTATATAGAGTCAGGTTAGAGCAAAGCTGCATAAGCGGCGTTTAGTCAATAAATCCATGCCTGTTTGTATTCACTCTTTAAACGGAGCTAGATAACTGTTAAGATCTGTATTTCTTTTGATAAAGAACCAGCATGTTTACACTTGTAGGGTTTATTTATACAATCAGCTTGGACAAGAAGGTCTCGAGGGGAGGCTGCGAAGCGACCAAACAAGAAATCATGGAAACAAAGGACAGATATGTATATGAGGCCATTTTTACTAAATGTTTTTTTTTCGAAGAAATTTATCCATGCGAAGGTAATGCATAGAGGAACTAGCAAAGTGATATCAGTGGCGACAACAAATGCAAAGGATCTTAGAAACAGTCTACCATCCCTTACAGATCACAATGCATGTAGAGTAATAGGGAAGCTTATTGCAGAGAGATCAAAGGAAGCAGATGTATATGCAATTTCGTATGAGCCTAGGAAGGATGAAAGAATTGAAGGTAAAATTGGCATTGTTATTGATACCATTAAGGAGAACGGGATCATGTTTGTACCTTGAATTTATATAAAGGCAAGAATAATAAGACGATAAACAACTCATCTAAAGCCTCTTATAGGTAGTAGATGATTGTATTGTAAAAGCTGACATCCTCCTGTTTAGCTTGGTTGAAATATCCGAAGCTGTTGCTCTTACCAAAACCTCTCCTACATGCTATGCCAGAACACTAGTTTATTTGAGGTTTAAATGTTAT ATGCTTTGGTGTTGGACCGTGAAGTCACGGAAGTTGAGAGCAATTGCACGGGAGAATTTTATTTTATTCCCGTTGGGAAATTCTGTTTACAAGTGTTGTTCTAACGGAGGTGTCAAAGGGGATCCCAGAACAGGGAAAATCGCTTCTATTCTTTGTGCAGTTTGTCCATGGACTAATCCTTGTGTACAACAAAGGCATCATTTCGCCAAAGACGTAGCATATCAATTGGTATTGATATTTATAGATAACAGACGACCACGTGTCAGAAAAGTACAAGGCAAACATATAACAGAAAAGATTATCCAAAAAATACAAGGTTTATTTATACAATCAGCTTGGACAAGAAGGTCTCGAGGGGAGGCTGCGAAGCGACCAAACAAGAAATCATGGAAACAAAGGACAGATATGTATATGAGGCCATTTTTACTAAATGTTTTTTTTTCGAAGAAATTTATCCATGCGAAGGTAATGCATAGAGGAACTAGCAAAGTGATATCAGTGGCGACAACAAATGCAAAGGATCTTAGAAACAGTCTACCATCCCTTACAGATCACAATGCATGTAGAGTAATAGGGAAGCTTATTGCAGAGAGATCAAAGGAAGCAGATGTATATGCAATTTCGTATGAGCCTAGGAAGGATGAAAGAATTGAAGGTAAAATTGGCATTGTTATTGATACCATTAAGGAGAACGGGATCATGTTTGTACCTTGAATTTATATAAAGGCAAGAATAATAAGACGATAAACAACTCATCTAAAGCCTCTTATAGGTAGTAGATGATTGTATTGTAAAAGCTGACATCCTCCTGTTTAGCTTGGTTGAAATATCCGAAGCTGTTGCTCTTACCAAAACCTCTCCTACATGCTATGCCAGAACACTAGTTTATTTGAGGTTTAAATGTTAT ATGCTTTGGTGTTGGACCGTGAAGTCACGGAAGTTGAGAGCAATTGCACGGGAGAATTTTATTTTATTCCCGTTGGGAAATTCTGTTTACAAGTGTTGTTCTAACGGAGGTGTCAAAGGGGATCCCAGAACAGGGAAAATCGCTTCTATTCTTTGTGCAGTTTGTCCATGGACTAATCCTTGTGTACAACAAAGGCATCATTTCGCCAAAGACGTAGCATATCAATTGGTATTGATATTTATAGATAACAGACGACCACGTGTCAGAAAAGTACAAGGCAAACATATAACAGAAAAGATTATCCAAAAAATACAAGGTTTATTTATACAATCAGCTTGGACAAGAAGGTCTCGAGGGGAGGCTGCGAAGCGACCAAACAAGAAATCATGGAAACAAAGGACAGATATGTATATGAGGCCATTTTTACTAAATGTTTTTTTTTCGAAGAAATTTATCCATGCGAAGGTAATGCATAGAGGAACTAGCAAAGTGATATCAGTGGCGACAACAAATGCAAAGGATCTTAGAAACAGTCTACCATCCCTTACAGATCACAATGCATGTAGAGTAATAGGGAAGCTTATTGCAGAGAGATCAAAGGAAGCAGATGTATATGCAATTTCGTATGAGCCTAGGAAGGATGAAAGAATTGAAGGTAAAATTGGCATTGTTATTGATACCATTAAGGAGAACGGGATCATGTTTGTACCTTGA MLWCWTVKSRKLRAIARENFILFPLGNSVYKCCSNGGVKGDPRTGKIASILCAVCPWTNPCVQQRHHFAKDVAYQLVLIFIDNRRPRVRKVQGKHITEKIIQKIQGLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKIGIVIDTIKENGIMFVP Homology
BLAST of Clc11G08830 vs. NCBI nr
Match: XP_023521951.1 (uncharacterized protein LOC111785799 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 260.0 bits (663), Expect = 2.0e-65 Identity = 129/131 (98.47%), Postives = 131/131 (100.00%), Query Frame = 0
BLAST of Clc11G08830 vs. NCBI nr
Match: XP_022990182.1 (uncharacterized protein LOC111487153 [Cucurbita maxima]) HSP 1 Score: 260.0 bits (663), Expect = 2.0e-65 Identity = 129/131 (98.47%), Postives = 131/131 (100.00%), Query Frame = 0
BLAST of Clc11G08830 vs. NCBI nr
Match: XP_022152485.1 (uncharacterized protein LOC111020202 [Momordica charantia]) HSP 1 Score: 259.6 bits (662), Expect = 2.6e-65 Identity = 128/131 (97.71%), Postives = 131/131 (100.00%), Query Frame = 0
BLAST of Clc11G08830 vs. NCBI nr
Match: XP_038886307.1 (50S ribosomal protein L18-like [Benincasa hispida]) HSP 1 Score: 256.9 bits (655), Expect = 1.7e-64 Identity = 128/130 (98.46%), Postives = 130/130 (100.00%), Query Frame = 0
BLAST of Clc11G08830 vs. NCBI nr
Match: XP_022963861.1 (uncharacterized protein LOC111464045 [Cucurbita moschata]) HSP 1 Score: 256.9 bits (655), Expect = 1.7e-64 Identity = 127/131 (96.95%), Postives = 130/131 (99.24%), Query Frame = 0
BLAST of Clc11G08830 vs. ExPASy Swiss-Prot
Match: Q5P316 (50S ribosomal protein L18 OS=Aromatoleum aromaticum (strain EbN1) OX=76114 GN=rplR PE=3 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 1.5e-07 Identity = 39/121 (32.23%), Postives = 67/121 (55.37%), Query Frame = 0
BLAST of Clc11G08830 vs. ExPASy Swiss-Prot
Match: A9BG02 (50S ribosomal protein L18 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) OX=403833 GN=rplR PE=3 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 5.7e-07 Identity = 35/121 (28.93%), Postives = 65/121 (53.72%), Query Frame = 0
BLAST of Clc11G08830 vs. ExPASy Swiss-Prot
Match: B7L0T4 (50S ribosomal protein L18 OS=Methylorubrum extorquens (strain CM4 / NCIMB 13688) OX=440085 GN=rplR PE=3 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 2.8e-06 Identity = 30/93 (32.26%), Postives = 53/93 (56.99%), Query Frame = 0
BLAST of Clc11G08830 vs. ExPASy Swiss-Prot
Match: A9W4S4 (50S ribosomal protein L18 OS=Methylorubrum extorquens (strain PA1) OX=419610 GN=rplR PE=3 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 2.8e-06 Identity = 30/93 (32.26%), Postives = 53/93 (56.99%), Query Frame = 0
BLAST of Clc11G08830 vs. ExPASy Swiss-Prot
Match: B1Z777 (50S ribosomal protein L18 OS=Methylorubrum populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) OX=441620 GN=rplR PE=3 SV=1) HSP 1 Score: 52.8 bits (125), Expect = 6.3e-06 Identity = 30/93 (32.26%), Postives = 52/93 (55.91%), Query Frame = 0
BLAST of Clc11G08830 vs. ExPASy TrEMBL
Match: A0A6J1JHY7 (uncharacterized protein LOC111487153 OS=Cucurbita maxima OX=3661 GN=LOC111487153 PE=4 SV=1) HSP 1 Score: 260.0 bits (663), Expect = 9.7e-66 Identity = 129/131 (98.47%), Postives = 131/131 (100.00%), Query Frame = 0
BLAST of Clc11G08830 vs. ExPASy TrEMBL
Match: A0A6J1DE20 (uncharacterized protein LOC111020202 OS=Momordica charantia OX=3673 GN=LOC111020202 PE=4 SV=1) HSP 1 Score: 259.6 bits (662), Expect = 1.3e-65 Identity = 128/131 (97.71%), Postives = 131/131 (100.00%), Query Frame = 0
BLAST of Clc11G08830 vs. ExPASy TrEMBL
Match: A0A6J1HH86 (uncharacterized protein LOC111464045 OS=Cucurbita moschata OX=3662 GN=LOC111464045 PE=4 SV=1) HSP 1 Score: 256.9 bits (655), Expect = 8.2e-65 Identity = 127/131 (96.95%), Postives = 130/131 (99.24%), Query Frame = 0
BLAST of Clc11G08830 vs. ExPASy TrEMBL
Match: A0A1S3B2Q8 (50S ribosomal protein L18-like OS=Cucumis melo OX=3656 GN=LOC103485371 PE=4 SV=1) HSP 1 Score: 256.9 bits (655), Expect = 8.2e-65 Identity = 128/131 (97.71%), Postives = 130/131 (99.24%), Query Frame = 0
BLAST of Clc11G08830 vs. ExPASy TrEMBL
Match: A0A6J1JY30 (uncharacterized protein LOC111489327 OS=Cucurbita maxima OX=3661 GN=LOC111489327 PE=4 SV=1) HSP 1 Score: 256.5 bits (654), Expect = 1.1e-64 Identity = 129/152 (84.87%), Postives = 137/152 (90.13%), Query Frame = 0
BLAST of Clc11G08830 vs. TAIR 10
Match: AT3G20230.1 (Ribosomal L18p/L5e family protein ) HSP 1 Score: 231.1 bits (588), Expect = 9.2e-61 Identity = 115/152 (75.66%), Postives = 134/152 (88.16%), Query Frame = 0
BLAST of Clc11G08830 vs. TAIR 10
Match: AT1G08845.1 (Ribosomal L18p/L5e family protein ) HSP 1 Score: 107.8 bits (268), Expect = 1.2e-23 Identity = 55/113 (48.67%), Postives = 79/113 (69.91%), Query Frame = 0
BLAST of Clc11G08830 vs. TAIR 10
Match: AT1G08845.2 (Ribosomal L18p/L5e family protein ) HSP 1 Score: 107.8 bits (268), Expect = 1.2e-23 Identity = 55/113 (48.67%), Postives = 79/113 (69.91%), Query Frame = 0
BLAST of Clc11G08830 vs. TAIR 10
Match: AT3G22450.1 (Ribosomal L18p/L5e family protein ) HSP 1 Score: 86.3 bits (212), Expect = 3.7e-17 Identity = 42/111 (37.84%), Postives = 73/111 (65.77%), Query Frame = 0
BLAST of Clc11G08830 vs. TAIR 10
Match: AT5G27820.1 (Ribosomal L18p/L5e family protein ) HSP 1 Score: 74.7 bits (182), Expect = 1.1e-13 Identity = 34/97 (35.05%), Postives = 62/97 (63.92%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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