Clc11G08820 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G08820
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	50S ribosomal protein L18-like
Location	ClcChr11: 10683795 .. 10685654 (+)
RNA-Seq Expression	Clc11G08820
Synteny	Clc11G08820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTCAATTCCCTCGCACCCTCACTTCCACAAAAAAGTCGTGGGTGGACGAATGAGCTGAATCTGAATGATGGCCTTCACAGCAATATCTTCTTCACTGCCGTCTTGTTCTTCTGTGCCTTCACTTCTCTCCTTCCAGTGGCCATCAACTCCATTACAGAAATCCTCGTCTCTCTCGTGGTCATCTTCATTTCCGCATCTTAGCATATCCAGAGGCTCTCCTTTCGCCTCTTCCAATCCCGCGCATGCCAAGGTACAATTTCTTCACTCCCATCATACTCGATTCTCTATCTATTCCGGAGGATATCTTATTTACATTTTCAAGTTTATGATTTATCGATTGTTGACCACGAATTTCTCTATTGTTATTGTTCACTTTTGTTGGGAGAAGCAGAATTATTTGTGAGGCAGTTTAATCTGTGGTGGGTTTGCTGCTAGTAGTCAATAGTAAAGGAGAGATAAATAATTCAGGATAATTTTTCAGGATATGGTTTGAGAATTTGAAAAGAATACTGCGTGCAGTCATTTTTGTGAGAATAGTCGTGCTGTTATTATGGCTGGAGAAGACAGAAATGACTGTTCCATGGTATACAGAGTTCTCAACTATTTTCTGCTTCGTTCCAGGTCAATTGACTTCATTGCAATTGTTGAGCAGTGTCCCAGTTCCACATCTTTCAGATACTTCCGTTTCGACCTTCTATTTTAGTTGGGTGTGAAATTGAGGACAGAGCTTAGAAATTCGTGAGATAAATGGCCACAACGTTTTGAACCCATGACCACACGGTGAGAAGTTTCCTCTACGTTAACATCCTTGGACTCAGCTAGGTATATTAACAATTTTCCGACTTGAAATGTGGAATATTCAGGAAGATTTCCACTGAACCAAGAATAATACTTGCCTTTTTGAAGAAGAGGAAGAGATAACCCCCTTTTGGTGGCAATGTTATCATTGTTACACGTGGCTTTCGTGGTGGTTATTTTCCTTGGTTTGTATCATATTATTGTTTCAAAAGTTTGTTGCTAGCTGTCAAGCTTGGATTCAGGTCTAAAACTCTTGCCGGGGCCTGTGATTATGGGACTCGCTAGCCACATGGATGATAGGATTTGTGCCAAGCTTCAACCTTTAGCTTTTCTTCCTTTTGAGGCCAGGGATATGATAGAACAAGGCAAACAAGATGTGCTCACTGATTCTCCTATTGAAAATGCCTTGCTCATTTAAATTTTAGTTGCTATTTTGGCAAGGTCGATAATTTTAGTTGCTGATATTCATCTCTTGGATGTTCATGTAGAGAGTGAGGGAAATATGGCATAGGGCAAGATAGATAGGCTTCGGAGTCAACGTCAGAAGGAAGAGCAATTATGGCGGTGGAATGTTTAGTACCGGGACGGAAAATAGTTTTTAAGGTGGAAGAGGGTGGCACACAGCTAATGTTGATGTTTGAGAAAGATCTCGGATTGTGATTGGTTGGTTGATCCAATGATGGAGAAGGGTAAGGGTCTTTCAAAGAGGGCGGATCATAGTTGTTGGTGAAGGCTGGGGAAGAAGCCATGTTGTTAATGGTTGGGTAACCTGTGGGTGGTGAGGGGGTAGGGATTGTGGAGGTTAGTGGTGAAGAAGAAAGAGGGGAAGGGTAGCTTGGATGCAGGTGCAGGGGAGTTGTTGGATTCAGATGGGAGAGATGATGAAGATGAAGCTGTGGTTTTCTGCCGTGGAGATGAGAGAGGGGGAGGAGTAGGAGGTTTGACCAAGGGTGAAGTGTGGTTGTCAGGTGGGCTGAAGGTTGAGGAAGGGAAGGAGCTGTTGGGTGGAGAGGGAGTGGGAGGAAGAAGGGATGTTGTCTATGGAAAGGAGAAATGA

mRNA sequence

ATGGAGTCAATTCCCTCGCACCCTCACTTCCACAAAAAAGTCGTGGGTGGACGAATGAGCTGAATCTGAATGATGGCCTTCACAGCAATATCTTCTTCACTGCCGTCTTGTTCTTCTGTGCCTTCACTTCTCTCCTTCCAGTGGCCATCAACTCCATTACAGAAATCCTCGTCTCTCTCGTGGTCATCTTCATTTCCGCATCTTAGCATATCCAGAGGCTCTCCTTTCGCCTCTTCCAATCCCGCGCATGCCAAGAATACTGCGTGCAGTCATTTTTGTGAGAATAGTCGTGCTGTTATTATGGCTGGAGAAGACAGAAATGACTGTTCCATGGTATACAGAGTTCTCAACTATTTTCTGCTTCGTTCCAGGTCAATTGACTTCATTGCAATTGTTGAGCAGTGTCCCAGTCTAAAACTCTTGCCGGGGCCTGTGATTATGGGACTCGCTAGCCACATGGATGATAGGATTTGTGCCAAGCTTCAACCTTTAGCTTTTCTTCCTTTTGAGGCCAGGGATATGATAGAACAAGGCAAACAAGATGGATTGTGGAGGTTAGTGGTGAAGAAGAAAGAGGGGAAGGGTAGCTTGGATGCAGGTGCAGGGGAGTTGTTGGATTCAGATGGGAGAGATGATGAAGATGAAGCTGTGGTTTTCTGCCGTGGAGATGAGAGAGGGGGAGGAGTAGGAGGTTTGACCAAGGGTGAAGTGTGGTTGTCAGGTGGGCTGAAGGTTGAGGAAGGGAAGGAGCTGTTGGGTGGAGAGGGAGTGGGAGGAAGAAGGGATGTTGTCTATGGAAAGGAGAAATGA

Coding sequence (CDS)

ATGATGGCCTTCACAGCAATATCTTCTTCACTGCCGTCTTGTTCTTCTGTGCCTTCACTTCTCTCCTTCCAGTGGCCATCAACTCCATTACAGAAATCCTCGTCTCTCTCGTGGTCATCTTCATTTCCGCATCTTAGCATATCCAGAGGCTCTCCTTTCGCCTCTTCCAATCCCGCGCATGCCAAGAATACTGCGTGCAGTCATTTTTGTGAGAATAGTCGTGCTGTTATTATGGCTGGAGAAGACAGAAATGACTGTTCCATGGTATACAGAGTTCTCAACTATTTTCTGCTTCGTTCCAGGTCAATTGACTTCATTGCAATTGTTGAGCAGTGTCCCAGTCTAAAACTCTTGCCGGGGCCTGTGATTATGGGACTCGCTAGCCACATGGATGATAGGATTTGTGCCAAGCTTCAACCTTTAGCTTTTCTTCCTTTTGAGGCCAGGGATATGATAGAACAAGGCAAACAAGATGGATTGTGGAGGTTAGTGGTGAAGAAGAAAGAGGGGAAGGGTAGCTTGGATGCAGGTGCAGGGGAGTTGTTGGATTCAGATGGGAGAGATGATGAAGATGAAGCTGTGGTTTTCTGCCGTGGAGATGAGAGAGGGGGAGGAGTAGGAGGTTTGACCAAGGGTGAAGTGTGGTTGTCAGGTGGGCTGAAGGTTGAGGAAGGGAAGGAGCTGTTGGGTGGAGAGGGAGTGGGAGGAAGAAGGGATGTTGTCTATGGAAAGGAGAAATGA

Protein sequence

MMAFTAISSSLPSCSSVPSLLSFQWPSTPLQKSSSLSWSSSFPHLSISRGSPFASSNPAHAKNTACSHFCENSRAVIMAGEDRNDCSMVYRVLNYFLLRSRSIDFIAIVEQCPSLKLLPGPVIMGLASHMDDRICAKLQPLAFLPFEARDMIEQGKQDGLWRLVVKKKEGKGSLDAGAGELLDSDGRDDEDEAVVFCRGDERGGGVGGLTKGEVWLSGGLKVEEGKELLGGEGVGGRRDVVYGKEK

Homology

[Close]

BLAST of Clc11G08820 vs. NCBI nr
Match: XP_022993255.1 (uncharacterized protein LOC111489327 [Cucurbita maxima])

HSP 1 Score: 91.3 bits (225), Expect = 1.3e-14
Identity = 51/64 (79.69%), Postives = 55/64 (85.94%), Query Frame = 0


Query: 2  MAFTAISSSLPSCSSVPSLLSFQWPSTPL---QKSSSLSWSSSFPHLSISRGSPFASSNP 61
          MAF AISSSLPSCSSVPS+LSFQWPSTP    QKSSSLSW+SSFPH++ISRGS   SSNP
Sbjct: 1  MAFIAISSSLPSCSSVPSVLSFQWPSTPTILSQKSSSLSWASSFPHVTISRGSHVVSSNP 60

Query: 62 AHAK 63
          AH K
Sbjct: 61 AHDK 64

[Close]

BLAST of Clc11G08820 vs. NCBI nr
Match: XP_008441144.1 (PREDICTED: 50S ribosomal protein L18-like [Cucumis melo])

HSP 1 Score: 84.3 bits (207), Expect = 1.6e-12
Identity = 48/61 (78.69%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 2  MAFTAISSSLPSCSSVPSLLSFQWPSTPLQKSSSLSWSSSFPHLSISRGSPFASSNPAHA 61
          MAFTAI+SSLPSCSSV    S Q PSTPLQKSSSLSW+SSFPH++I RGSPFASSNP +A
Sbjct: 1  MAFTAIASSLPSCSSV---FSSQGPSTPLQKSSSLSWASSFPHVNIFRGSPFASSNPPYA 58

Query: 62 K 63
          K
Sbjct: 61 K 58

[Close]

BLAST of Clc11G08820 vs. NCBI nr
Match: XP_023550056.1 (uncharacterized protein LOC111808358 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 80.9 bits (198), Expect = 1.7e-11
Identity = 49/66 (74.24%), Postives = 55/66 (83.33%), Query Frame = 0


Query: 2  MAFTAISSSLP--SCSSVPSLLSFQWPSTPL---QKSSSLSWSSSFPHLSISRGSPFASS 61
          MAFTAISSSLP  S SSVPS++SFQ PS+P    QKSSSLSW+SSFPH++ISRGSP  SS
Sbjct: 1  MAFTAISSSLPSSSSSSVPSVISFQCPSSPAILSQKSSSLSWASSFPHVTISRGSPVVSS 60

Query: 62 NPAHAK 63
          NPAH K
Sbjct: 61 NPAHDK 66

[Close]

BLAST of Clc11G08820 vs. NCBI nr
Match: XP_023521951.1 (uncharacterized protein LOC111785799 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 80.9 bits (198), Expect = 1.7e-11
Identity = 47/64 (73.44%), Postives = 54/64 (84.38%), Query Frame = 0


Query: 2  MAFTAISSSLPSCSSVPSLLSFQ---WPSTPLQKSSSLSWSSSFPHLSISRGSPFASSNP 61
          MAFTAISSS+PS +SV S+LS Q    P+TP QKSSSLSW+SSFP +S+SRGSPF SSNP
Sbjct: 1  MAFTAISSSMPSSASVRSILSSQCISTPTTPSQKSSSLSWASSFPSISLSRGSPFVSSNP 60

Query: 62 AHAK 63
          AHAK
Sbjct: 61 AHAK 64

[Close]

BLAST of Clc11G08820 vs. NCBI nr
Match: XP_022152485.1 (uncharacterized protein LOC111020202 [Momordica charantia])

HSP 1 Score: 79.0 bits (193), Expect = 6.5e-11
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 0


Query: 2  MAFTAISSSLPSCSSVPSLLSFQW---PSTPLQKSSSLSWSSSFPHLSISRGSPFASSNP 61
          MAFTA+SSSLPSCSSV S+LS QW   P+TP +K SSLSW SSFP++SIS GS   SSNP
Sbjct: 7  MAFTAVSSSLPSCSSVRSVLSSQWLSDPTTPSRKPSSLSWVSSFPNISISTGSSSISSNP 66

Query: 62 AHAK 63
          AHAK
Sbjct: 67 AHAK 70

[Close]

BLAST of Clc11G08820 vs. ExPASy TrEMBL
Match: A0A6J1JY30 (uncharacterized protein LOC111489327 OS=Cucurbita maxima OX=3661 GN=LOC111489327 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 6.2e-15
Identity = 51/64 (79.69%), Postives = 55/64 (85.94%), Query Frame = 0


Query: 2  MAFTAISSSLPSCSSVPSLLSFQWPSTPL---QKSSSLSWSSSFPHLSISRGSPFASSNP 61
          MAF AISSSLPSCSSVPS+LSFQWPSTP    QKSSSLSW+SSFPH++ISRGS   SSNP
Sbjct: 1  MAFIAISSSLPSCSSVPSVLSFQWPSTPTILSQKSSSLSWASSFPHVTISRGSHVVSSNP 60

Query: 62 AHAK 63
          AH K
Sbjct: 61 AHDK 64

[Close]

BLAST of Clc11G08820 vs. ExPASy TrEMBL
Match: A0A1S3B2Q8 (50S ribosomal protein L18-like OS=Cucumis melo OX=3656 GN=LOC103485371 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 7.5e-13
Identity = 48/61 (78.69%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 2  MAFTAISSSLPSCSSVPSLLSFQWPSTPLQKSSSLSWSSSFPHLSISRGSPFASSNPAHA 61
          MAFTAI+SSLPSCSSV    S Q PSTPLQKSSSLSW+SSFPH++I RGSPFASSNP +A
Sbjct: 1  MAFTAIASSLPSCSSV---FSSQGPSTPLQKSSSLSWASSFPHVNIFRGSPFASSNPPYA 58

Query: 62 K 63
          K
Sbjct: 61 K 58

[Close]

BLAST of Clc11G08820 vs. ExPASy TrEMBL
Match: A0A6J1JHY7 (uncharacterized protein LOC111487153 OS=Cucurbita maxima OX=3661 GN=LOC111487153 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.2e-11
Identity = 47/63 (74.60%), Postives = 53/63 (84.13%), Query Frame = 0


Query: 2  MAFTAISSSLPSCSSVPSLLSFQWPSTPL--QKSSSLSWSSSFPHLSISRGSPFASSNPA 61
          MAFTAISSS+PS +SV S+LS Q  STP   QKSSSLSW+SSFP +S+SRGSPF SSNPA
Sbjct: 1  MAFTAISSSMPSSASVRSILSSQCISTPTTPQKSSSLSWASSFPSISLSRGSPFVSSNPA 60

Query: 62 HAK 63
          HAK
Sbjct: 61 HAK 63

[Close]

BLAST of Clc11G08820 vs. ExPASy TrEMBL
Match: A0A6J1DE20 (uncharacterized protein LOC111020202 OS=Momordica charantia OX=3673 GN=LOC111020202 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.2e-11
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 0


Query: 2  MAFTAISSSLPSCSSVPSLLSFQW---PSTPLQKSSSLSWSSSFPHLSISRGSPFASSNP 61
          MAFTA+SSSLPSCSSV S+LS QW   P+TP +K SSLSW SSFP++SIS GS   SSNP
Sbjct: 7  MAFTAVSSSLPSCSSVRSVLSSQWLSDPTTPSRKPSSLSWVSSFPNISISTGSSSISSNP 66

Query: 62 AHAK 63
          AHAK
Sbjct: 67 AHAK 70

[Close]

BLAST of Clc11G08820 vs. ExPASy TrEMBL
Match: A0A6J1HH86 (uncharacterized protein LOC111464045 OS=Cucurbita moschata OX=3662 GN=LOC111464045 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.1e-11
Identity = 46/64 (71.88%), Postives = 53/64 (82.81%), Query Frame = 0


Query: 2  MAFTAISSSLPSCSSVPSLLSFQ---WPSTPLQKSSSLSWSSSFPHLSISRGSPFASSNP 61
          MAFTAISSS+PS + V S+LS Q    P+TP QKSSSLSW+SSFP +S+SRGSPF SSNP
Sbjct: 1  MAFTAISSSMPSSAFVRSILSSQCISTPTTPSQKSSSLSWASSFPSISLSRGSPFVSSNP 60

Query: 62 AHAK 63
          AHAK
Sbjct: 61 AHAK 64

The following BLAST results are available for this feature:

BLAST of Clc11G08820 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022993255.1	1.3e-14	79.69	uncharacterized protein LOC111489327 [Cucurbita maxima]	[more]
XP_008441144.1	1.6e-12	78.69	PREDICTED: 50S ribosomal protein L18-like [Cucumis melo]	[more]
XP_023550056.1	1.7e-11	74.24	uncharacterized protein LOC111808358 [Cucurbita pepo subsp. pepo]	[more]
XP_023521951.1	1.7e-11	73.44	uncharacterized protein LOC111785799 [Cucurbita pepo subsp. pepo]	[more]
XP_022152485.1	6.5e-11	71.88	uncharacterized protein LOC111020202 [Momordica charantia]	[more]

BLAST of Clc11G08820 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc11G08820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JY30	6.2e-15	79.69	uncharacterized protein LOC111489327 OS=Cucurbita maxima OX=3661 GN=LOC111489327...	[more]
A0A1S3B2Q8	7.5e-13	78.69	50S ribosomal protein L18-like OS=Cucumis melo OX=3656 GN=LOC103485371 PE=4 SV=1	[more]
A0A6J1JHY7	3.2e-11	74.60	uncharacterized protein LOC111487153 OS=Cucurbita maxima OX=3661 GN=LOC111487153...	[more]
A0A6J1DE20	3.2e-11	71.88	uncharacterized protein LOC111020202 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A6J1HH86	4.1e-11	71.88	uncharacterized protein LOC111464045 OS=Cucurbita moschata OX=3662 GN=LOC1114640...	[more]

BLAST of Clc11G08820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G08820.2	Clc11G08820.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome