Clc11G08790 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G08790
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	DEAD-box ATP-dependent RNA helicase FANCM isoform X6
Location	ClcChr11: 10644743 .. 10645409 (+)
RNA-Seq Expression	Clc11G08790
Synteny	Clc11G08790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAAGCAAACAACAAGCAAGTCTATAAAGAAACACATGCAAAATGGGGGAATAAATAGCTTCAACTTTCATGCTAGCTCTAGAATGGTGAGATCATTTGACAGAAGTCTATCACAACAGAGTATTCTTTTCTTATGCTATTGATTCTTTTCCATTATTTAGATTCCACATACTATCAAACCAGAAGTCCAGTTTGTTAAGCTGTCTATCAAACAATTTGTTCGCCTTGGAAAGAAAATGAAAGATGATCATGCTGTTCAGATAACATCATTTAAGAACAAGCTAACTGATACTGAGACTGAGTTACTTCTCAAGTATTTCCATCCTTGTGAAGACGCATGGAGGCCGTCCCTTATTGCCTTTCCTCACTTCCAGACTTTTCCCTCAAGAACCCATCGAGTAATGCATTCATGTAGAACAATGGTTCTAATTGACACAATGCAACACTTGCAAGGACTGCATTTCTCTGTTCAGGTTTGTTTTTAAGTTCTCTTCTACCTTCTTTCTCCTTAAAAGAAATTACTCTCTAGTAACTGGGCTTATCATACAGCGTGGTTGGATTCAGGAGAAACCATGCATTAGAGAACTATTAGAAGCAGGCCAGGTTGAAAACTGTAGCAGCAAAAGAGGTGGGGATTTCTTTTTGATTTCATTGCCTGCATAA

mRNA sequence

ATGAAAAAGCAAACAACAAGCAAGTCTATAAAGAAACACATGCAAAATGGGGGAATAAATAGCTTCAACTTTCATGCTAGCTCTAGAATGATTCCACATACTATCAAACCAGAAGTCCAGTTTGTTAAGCTGTCTATCAAACAATTTGTTCGCCTTGGAAAGAAAATGAAAGATGATCATGCTGTTCAGATAACATCATTTAAGAACAAGCTAACTGATACTGAGACTGAGTTACTTCTCAAGTATTTCCATCCTTGTGAAGACGCATGGAGGCCGTCCCTTATTGCCTTTCCTCACTTCCAGACTTTTCCCTCAAGAACCCATCGAGTAATGCATTCATGTAGAACAATGGTTCTAATTGACACAATGCAACACTTGCAAGGACTGCATTTCTCTGTTCAGCGTGGTTGGATTCAGGAGAAACCATGCATTAGAGAACTATTAGAAGCAGGCCAGGTTGAAAACTGTAGCAGCAAAAGAGGTGGGGATTTCTTTTTGATTTCATTGCCTGCATAA

Coding sequence (CDS)

ATGAAAAAGCAAACAACAAGCAAGTCTATAAAGAAACACATGCAAAATGGGGGAATAAATAGCTTCAACTTTCATGCTAGCTCTAGAATGATTCCACATACTATCAAACCAGAAGTCCAGTTTGTTAAGCTGTCTATCAAACAATTTGTTCGCCTTGGAAAGAAAATGAAAGATGATCATGCTGTTCAGATAACATCATTTAAGAACAAGCTAACTGATACTGAGACTGAGTTACTTCTCAAGTATTTCCATCCTTGTGAAGACGCATGGAGGCCGTCCCTTATTGCCTTTCCTCACTTCCAGACTTTTCCCTCAAGAACCCATCGAGTAATGCATTCATGTAGAACAATGGTTCTAATTGACACAATGCAACACTTGCAAGGACTGCATTTCTCTGTTCAGCGTGGTTGGATTCAGGAGAAACCATGCATTAGAGAACTATTAGAAGCAGGCCAGGTTGAAAACTGTAGCAGCAAAAGAGGTGGGGATTTCTTTTTGATTTCATTGCCTGCATAA

Protein sequence

MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVRLGKKMKDDHAVQITSFKNKLTDTETELLLKYFHPCEDAWRPSLIAFPHFQTFPSRTHRVMHSCRTMVLIDTMQHLQGLHFSVQRGWIQEKPCIRELLEAGQVENCSSKRGGDFFLISLPA

Homology

[Close]

BLAST of Clc11G08790 vs. NCBI nr
Match: XP_038884540.1 (DEAD-box ATP-dependent RNA helicase FANCM isoform X6 [Benincasa hispida])

HSP 1 Score: 301.2 bits (770), Expect = 5.6e-78
Identity = 150/168 (89.29%), Postives = 153/168 (91.07%), Query Frame = 0


Query: 1   MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVRLGKKMKDDH 60
           MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVR GKK+KDD 
Sbjct: 458 MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVRPGKKVKDDL 517

Query: 61  AVQITSFKNKLTDTETELLLKYFHPCEDAWRPSLIAFPHFQTFPSRTHRVMHSCRTMVLI 120
           AVQITSF++KLTDTETELLLKYFHPCEDAWRPSLIAFPHFQTFPSR H VMHSCRTMVLI
Sbjct: 518 AVQITSFESKLTDTETELLLKYFHPCEDAWRPSLIAFPHFQTFPSRAHGVMHSCRTMVLI 577

Query: 121 DTMQHLQGLH-------FSVQRGWIQEKPCIRELLEAGQVENCSSKRG 162
           DTMQHLQ LH       FSVQRGWIQEK CIREL EAGQVE CSSKRG
Sbjct: 578 DTMQHLQRLHFSREPESFSVQRGWIQEKSCIRELFEAGQVEKCSSKRG 625

[Close]

BLAST of Clc11G08790 vs. NCBI nr
Match: XP_038884541.1 (DEAD-box ATP-dependent RNA helicase FANCM isoform X7 [Benincasa hispida])

HSP 1 Score: 301.2 bits (770), Expect = 5.6e-78
Identity = 150/168 (89.29%), Postives = 153/168 (91.07%), Query Frame = 0


Query: 1   MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVRLGKKMKDDH 60
           MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVR GKK+KDD 
Sbjct: 458 MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVRPGKKVKDDL 517

Query: 61  AVQITSFKNKLTDTETELLLKYFHPCEDAWRPSLIAFPHFQTFPSRTHRVMHSCRTMVLI 120
           AVQITSF++KLTDTETELLLKYFHPCEDAWRPSLIAFPHFQTFPSR H VMHSCRTMVLI
Sbjct: 518 AVQITSFESKLTDTETELLLKYFHPCEDAWRPSLIAFPHFQTFPSRAHGVMHSCRTMVLI 577

Query: 121 DTMQHLQGLH-------FSVQRGWIQEKPCIRELLEAGQVENCSSKRG 162
           DTMQHLQ LH       FSVQRGWIQEK CIREL EAGQVE CSSKRG
Sbjct: 578 DTMQHLQRLHFSREPESFSVQRGWIQEKSCIRELFEAGQVEKCSSKRG 625

[Close]

BLAST of Clc11G08790 vs. NCBI nr
Match: XP_038884542.1 (DEAD-box ATP-dependent RNA helicase FANCM isoform X8 [Benincasa hispida])

HSP 1 Score: 301.2 bits (770), Expect = 5.6e-78
Identity = 150/168 (89.29%), Postives = 153/168 (91.07%), Query Frame = 0


Query: 1   MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVRLGKKMKDDH 60
           MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVR GKK+KDD 
Sbjct: 456 MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVRPGKKVKDDL 515

Query: 61  AVQITSFKNKLTDTETELLLKYFHPCEDAWRPSLIAFPHFQTFPSRTHRVMHSCRTMVLI 120
           AVQITSF++KLTDTETELLLKYFHPCEDAWRPSLIAFPHFQTFPSR H VMHSCRTMVLI
Sbjct: 516 AVQITSFESKLTDTETELLLKYFHPCEDAWRPSLIAFPHFQTFPSRAHGVMHSCRTMVLI 575

Query: 121 DTMQHLQGLH-------FSVQRGWIQEKPCIRELLEAGQVENCSSKRG 162
           DTMQHLQ LH       FSVQRGWIQEK CIREL EAGQVE CSSKRG
Sbjct: 576 DTMQHLQRLHFSREPESFSVQRGWIQEKSCIRELFEAGQVEKCSSKRG 623

[Close]

BLAST of Clc11G08790 vs. NCBI nr
Match: XP_038884535.1 (DEAD-box ATP-dependent RNA helicase FANCM isoform X1 [Benincasa hispida])

HSP 1 Score: 301.2 bits (770), Expect = 5.6e-78
Identity = 150/168 (89.29%), Postives = 153/168 (91.07%), Query Frame = 0


Query: 1   MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVRLGKKMKDDH 60
           MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVR GKK+KDD 
Sbjct: 776 MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVRPGKKVKDDL 835

Query: 61  AVQITSFKNKLTDTETELLLKYFHPCEDAWRPSLIAFPHFQTFPSRTHRVMHSCRTMVLI 120
           AVQITSF++KLTDTETELLLKYFHPCEDAWRPSLIAFPHFQTFPSR H VMHSCRTMVLI
Sbjct: 836 AVQITSFESKLTDTETELLLKYFHPCEDAWRPSLIAFPHFQTFPSRAHGVMHSCRTMVLI 895

Query: 121 DTMQHLQGLH-------FSVQRGWIQEKPCIRELLEAGQVENCSSKRG 162
           DTMQHLQ LH       FSVQRGWIQEK CIREL EAGQVE CSSKRG
Sbjct: 896 DTMQHLQRLHFSREPESFSVQRGWIQEKSCIRELFEAGQVEKCSSKRG 943

[Close]

BLAST of Clc11G08790 vs. NCBI nr
Match: XP_038884544.1 (DEAD-box ATP-dependent RNA helicase FANCM isoform X9 [Benincasa hispida])

HSP 1 Score: 301.2 bits (770), Expect = 5.6e-78
Identity = 150/168 (89.29%), Postives = 153/168 (91.07%), Query Frame = 0


Query: 1   MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVRLGKKMKDDH 60
           MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVR GKK+KDD 
Sbjct: 405 MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVRPGKKVKDDL 464

Query: 61  AVQITSFKNKLTDTETELLLKYFHPCEDAWRPSLIAFPHFQTFPSRTHRVMHSCRTMVLI 120
           AVQITSF++KLTDTETELLLKYFHPCEDAWRPSLIAFPHFQTFPSR H VMHSCRTMVLI
Sbjct: 465 AVQITSFESKLTDTETELLLKYFHPCEDAWRPSLIAFPHFQTFPSRAHGVMHSCRTMVLI 524

Query: 121 DTMQHLQGLH-------FSVQRGWIQEKPCIRELLEAGQVENCSSKRG 162
           DTMQHLQ LH       FSVQRGWIQEK CIREL EAGQVE CSSKRG
Sbjct: 525 DTMQHLQRLHFSREPESFSVQRGWIQEKSCIRELFEAGQVEKCSSKRG 572

[Close]

BLAST of Clc11G08790 vs. ExPASy Swiss-Prot
Match: I3XHK1 (DEAD-box ATP-dependent RNA helicase FANCM OS=Arabidopsis thaliana OX=3702 GN=FANCM PE=2 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.6e-38
Identity = 80/135 (59.26%), Postives = 102/135 (75.56%), Query Frame = 0


Query: 1   MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVRLGKKMKDDH 60
           M+KQ + ++IKKHM+NGG NSFNFH S RMIPH  KPEVQ V+ SIKQFV  GKK+++++
Sbjct: 592 MRKQASGRAIKKHMRNGGTNSFNFHPSPRMIPHVYKPEVQHVEFSIKQFVPRGKKLQEEY 651

Query: 61  AVQITSFKNKLTDTETELLLKYF-HPCEDAWRPSLIAFPHFQTFPSRTHRVMHSCRTMVL 120
           A +  +F+ KLT  ET +L KY+ +P E+  R SLIAFPHFQT PS+ H+VMHS +T +L
Sbjct: 652 ATETPAFQKKLTPAETHMLAKYYNNPDEEKLRVSLIAFPHFQTLPSKVHKVMHSRQTGML 711

Query: 121 IDTMQHLQGLHFSVQ 135
           ID MQHLQ   FS Q
Sbjct: 712 IDAMQHLQEPTFSEQ 726

[Close]

BLAST of Clc11G08790 vs. ExPASy TrEMBL
Match: A0A6J1FGG7 (DEAD-box ATP-dependent RNA helicase FANCM isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111445272 PE=3 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.2e-70
Identity = 135/172 (78.49%), Postives = 148/172 (86.05%), Query Frame = 0


Query: 1   MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVRLGKKMKDDH 60
           M+KQTTSKSIKKHMQNGGINSFNFHAS RMIPHTIKPEVQFVKLSIKQFVR GKK+KD+H
Sbjct: 525 MRKQTTSKSIKKHMQNGGINSFNFHASPRMIPHTIKPEVQFVKLSIKQFVRPGKKVKDEH 584

Query: 61  AVQITSFKNKLTDTETELLLKYFHPCEDAWRPSLIAFPHFQTFPSRTHRVMHSCRTMVLI 120
           AVQITSFKNKLT+TETELLLKYFHPCEDAW+PS+IAFPHFQTFPSRTH V HS RTM+LI
Sbjct: 585 AVQITSFKNKLTNTETELLLKYFHPCEDAWKPSIIAFPHFQTFPSRTHGVRHSSRTMILI 644

Query: 121 DTMQHLQGLHFS--VQRGWIQEKPCIRELLEAGQVENCSSKRGGDFFLISLP 171
           DTMQHLQGL+FS   +   +QEKPCIREL EA Q+  C   + G    +S P
Sbjct: 645 DTMQHLQGLYFSRDSEAFSVQEKPCIRELFEASQIGKCYGGKRGSINEVSAP 696

[Close]

BLAST of Clc11G08790 vs. ExPASy TrEMBL
Match: A0A6J1FLC0 (DEAD-box ATP-dependent RNA helicase FANCM isoform X5 OS=Cucurbita moschata OX=3662 GN=LOC111445272 PE=3 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.2e-70
Identity = 135/172 (78.49%), Postives = 148/172 (86.05%), Query Frame = 0


Query: 1   MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVRLGKKMKDDH 60
           M+KQTTSKSIKKHMQNGGINSFNFHAS RMIPHTIKPEVQFVKLSIKQFVR GKK+KD+H
Sbjct: 493 MRKQTTSKSIKKHMQNGGINSFNFHASPRMIPHTIKPEVQFVKLSIKQFVRPGKKVKDEH 552

Query: 61  AVQITSFKNKLTDTETELLLKYFHPCEDAWRPSLIAFPHFQTFPSRTHRVMHSCRTMVLI 120
           AVQITSFKNKLT+TETELLLKYFHPCEDAW+PS+IAFPHFQTFPSRTH V HS RTM+LI
Sbjct: 553 AVQITSFKNKLTNTETELLLKYFHPCEDAWKPSIIAFPHFQTFPSRTHGVRHSSRTMILI 612

Query: 121 DTMQHLQGLHFS--VQRGWIQEKPCIRELLEAGQVENCSSKRGGDFFLISLP 171
           DTMQHLQGL+FS   +   +QEKPCIREL EA Q+  C   + G    +S P
Sbjct: 613 DTMQHLQGLYFSRDSEAFSVQEKPCIRELFEASQIGKCYGGKRGSINEVSAP 664

[Close]

BLAST of Clc11G08790 vs. ExPASy TrEMBL
Match: A0A6J1FGU4 (DEAD-box ATP-dependent RNA helicase FANCM isoform X6 OS=Cucurbita moschata OX=3662 GN=LOC111445272 PE=3 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.2e-70
Identity = 135/172 (78.49%), Postives = 148/172 (86.05%), Query Frame = 0


Query: 1   MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVRLGKKMKDDH 60
           M+KQTTSKSIKKHMQNGGINSFNFHAS RMIPHTIKPEVQFVKLSIKQFVR GKK+KD+H
Sbjct: 399 MRKQTTSKSIKKHMQNGGINSFNFHASPRMIPHTIKPEVQFVKLSIKQFVRPGKKVKDEH 458

Query: 61  AVQITSFKNKLTDTETELLLKYFHPCEDAWRPSLIAFPHFQTFPSRTHRVMHSCRTMVLI 120
           AVQITSFKNKLT+TETELLLKYFHPCEDAW+PS+IAFPHFQTFPSRTH V HS RTM+LI
Sbjct: 459 AVQITSFKNKLTNTETELLLKYFHPCEDAWKPSIIAFPHFQTFPSRTHGVRHSSRTMILI 518

Query: 121 DTMQHLQGLHFS--VQRGWIQEKPCIRELLEAGQVENCSSKRGGDFFLISLP 171
           DTMQHLQGL+FS   +   +QEKPCIREL EA Q+  C   + G    +S P
Sbjct: 519 DTMQHLQGLYFSRDSEAFSVQEKPCIRELFEASQIGKCYGGKRGSINEVSAP 570

[Close]

BLAST of Clc11G08790 vs. ExPASy TrEMBL
Match: A0A6J1FGT9 (DEAD-box ATP-dependent RNA helicase FANCM isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111445272 PE=3 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.2e-70
Identity = 135/172 (78.49%), Postives = 148/172 (86.05%), Query Frame = 0


Query: 1   MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVRLGKKMKDDH 60
           M+KQTTSKSIKKHMQNGGINSFNFHAS RMIPHTIKPEVQFVKLSIKQFVR GKK+KD+H
Sbjct: 605 MRKQTTSKSIKKHMQNGGINSFNFHASPRMIPHTIKPEVQFVKLSIKQFVRPGKKVKDEH 664

Query: 61  AVQITSFKNKLTDTETELLLKYFHPCEDAWRPSLIAFPHFQTFPSRTHRVMHSCRTMVLI 120
           AVQITSFKNKLT+TETELLLKYFHPCEDAW+PS+IAFPHFQTFPSRTH V HS RTM+LI
Sbjct: 665 AVQITSFKNKLTNTETELLLKYFHPCEDAWKPSIIAFPHFQTFPSRTHGVRHSSRTMILI 724

Query: 121 DTMQHLQGLHFS--VQRGWIQEKPCIRELLEAGQVENCSSKRGGDFFLISLP 171
           DTMQHLQGL+FS   +   +QEKPCIREL EA Q+  C   + G    +S P
Sbjct: 725 DTMQHLQGLYFSRDSEAFSVQEKPCIRELFEASQIGKCYGGKRGSINEVSAP 776

[Close]

BLAST of Clc11G08790 vs. ExPASy TrEMBL
Match: A0A6J1FMD9 (DEAD-box ATP-dependent RNA helicase FANCM isoform X7 OS=Cucurbita moschata OX=3662 GN=LOC111445272 PE=3 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.2e-70
Identity = 135/172 (78.49%), Postives = 148/172 (86.05%), Query Frame = 0


Query: 1   MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVRLGKKMKDDH 60
           M+KQTTSKSIKKHMQNGGINSFNFHAS RMIPHTIKPEVQFVKLSIKQFVR GKK+KD+H
Sbjct: 366 MRKQTTSKSIKKHMQNGGINSFNFHASPRMIPHTIKPEVQFVKLSIKQFVRPGKKVKDEH 425

Query: 61  AVQITSFKNKLTDTETELLLKYFHPCEDAWRPSLIAFPHFQTFPSRTHRVMHSCRTMVLI 120
           AVQITSFKNKLT+TETELLLKYFHPCEDAW+PS+IAFPHFQTFPSRTH V HS RTM+LI
Sbjct: 426 AVQITSFKNKLTNTETELLLKYFHPCEDAWKPSIIAFPHFQTFPSRTHGVRHSSRTMILI 485

Query: 121 DTMQHLQGLHFS--VQRGWIQEKPCIRELLEAGQVENCSSKRGGDFFLISLP 171
           DTMQHLQGL+FS   +   +QEKPCIREL EA Q+  C   + G    +S P
Sbjct: 486 DTMQHLQGLYFSRDSEAFSVQEKPCIRELFEASQIGKCYGGKRGSINEVSAP 537

[Close]

BLAST of Clc11G08790 vs. TAIR 10
Match: AT1G35530.2 (DEAD/DEAH box RNA helicase family protein )

HSP 1 Score: 160.6 bits (405), Expect = 1.1e-39
Identity = 80/135 (59.26%), Postives = 102/135 (75.56%), Query Frame = 0


Query: 1   MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVRLGKKMKDDH 60
           M+KQ + ++IKKHM+NGG NSFNFH S RMIPH  KPEVQ V+ SIKQFV  GKK+++++
Sbjct: 591 MRKQASGRAIKKHMRNGGTNSFNFHPSPRMIPHVYKPEVQHVEFSIKQFVPRGKKLQEEY 650

Query: 61  AVQITSFKNKLTDTETELLLKYF-HPCEDAWRPSLIAFPHFQTFPSRTHRVMHSCRTMVL 120
           A +  +F+ KLT  ET +L KY+ +P E+  R SLIAFPHFQT PS+ H+VMHS +T +L
Sbjct: 651 ATETPAFQKKLTPAETHMLAKYYNNPDEEKLRVSLIAFPHFQTLPSKVHKVMHSRQTGML 710

Query: 121 IDTMQHLQGLHFSVQ 135
           ID MQHLQ   FS Q
Sbjct: 711 IDAMQHLQEPTFSEQ 725

[Close]

BLAST of Clc11G08790 vs. TAIR 10
Match: AT1G35530.1 (DEAD/DEAH box RNA helicase family protein )

HSP 1 Score: 119.0 bits (297), Expect = 3.7e-27
Identity = 60/105 (57.14%), Postives = 77/105 (73.33%), Query Frame = 0


Query: 31  IPHTIKPEVQFVKLSIKQFVRLGKKMKDDHAVQITSFKNKLTDTETELLLKYF-HPCEDA 90
           IPH  KPEVQ V+ SIKQFV  GKK+++++A +  +F+ KLT  ET +L KY+ +P E+ 
Sbjct: 576 IPHVYKPEVQHVEFSIKQFVPRGKKLQEEYATETPAFQKKLTPAETHMLAKYYNNPDEEK 635

Query: 91  WRPSLIAFPHFQTFPSRTHRVMHSCRTMVLIDTMQHLQGLHFSVQ 135
            R SLIAFPHFQT PS+ H+VMHS +T +LID MQHLQ   FS Q
Sbjct: 636 LRVSLIAFPHFQTLPSKVHKVMHSRQTGMLIDAMQHLQEPTFSEQ 680

The following BLAST results are available for this feature:

BLAST of Clc11G08790 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884540.1	5.6e-78	89.29	DEAD-box ATP-dependent RNA helicase FANCM isoform X6 [Benincasa hispida]	[more]
XP_038884541.1	5.6e-78	89.29	DEAD-box ATP-dependent RNA helicase FANCM isoform X7 [Benincasa hispida]	[more]
XP_038884542.1	5.6e-78	89.29	DEAD-box ATP-dependent RNA helicase FANCM isoform X8 [Benincasa hispida]	[more]
XP_038884535.1	5.6e-78	89.29	DEAD-box ATP-dependent RNA helicase FANCM isoform X1 [Benincasa hispida]	[more]
XP_038884544.1	5.6e-78	89.29	DEAD-box ATP-dependent RNA helicase FANCM isoform X9 [Benincasa hispida]	[more]

BLAST of Clc11G08790 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
I3XHK1	1.6e-38	59.26	DEAD-box ATP-dependent RNA helicase FANCM OS=Arabidopsis thaliana OX=3702 GN=FAN...	[more]

BLAST of Clc11G08790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FGG7	1.2e-70	78.49	DEAD-box ATP-dependent RNA helicase FANCM isoform X4 OS=Cucurbita moschata OX=36...	[more]
A0A6J1FLC0	1.2e-70	78.49	DEAD-box ATP-dependent RNA helicase FANCM isoform X5 OS=Cucurbita moschata OX=36...	[more]
A0A6J1FGU4	1.2e-70	78.49	DEAD-box ATP-dependent RNA helicase FANCM isoform X6 OS=Cucurbita moschata OX=36...	[more]
A0A6J1FGT9	1.2e-70	78.49	DEAD-box ATP-dependent RNA helicase FANCM isoform X1 OS=Cucurbita moschata OX=36...	[more]
A0A6J1FMD9	1.2e-70	78.49	DEAD-box ATP-dependent RNA helicase FANCM isoform X7 OS=Cucurbita moschata OX=36...	[more]

BLAST of Clc11G08790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G35530.2	1.1e-39	59.26	DEAD/DEAH box RNA helicase family protein	[more]
AT1G35530.1	3.7e-27	57.14	DEAD/DEAH box RNA helicase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039686	FANCM/Mph1-like	PANTHER	PTHR14025:SF20	FANCONI ANEMIA GROUP M PROTEIN	coord: 1..135
None	No IPR available	PANTHER	PTHR14025	FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER	coord: 1..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G08790.1	Clc11G08790.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032508	DNA duplex unwinding
biological_process	GO:0006281	DNA repair
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0043138	3'-5' DNA helicase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016787	hydrolase activity