Clc11G08780 (gene) Watermelon (cordophanus) v2

Overview
NameClc11G08780
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr11: 10630265 .. 10636697 (+)
RNA-Seq ExpressionClc11G08780
SyntenyClc11G08780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGTTTTGGCAGACTTTCACCTAGTGTTAGGCTGAGATAAGTGAGAGGTAAAGTTCCAGTGGTGGAGAAGCTCCAAGAGTTCTTTATTAATGAATGCCAACAATAGGCTGAAGGCTTATTTATATACATCAAGCTAGATATGGGCCCAAGGCCTTAAAAACTAAACTAAAACGGGAATTAAATAAGCTATAAAAGGTGTTTAACACAATATTTCCTACATCATCCAGCTTTGCAATTCAATCTTGAGGCAGTAGTTATCAGCTTCTTCTCATCAATGTTGACTCCATACAATGCTGATTTTTCCCCGTTTATCTTCTGACCCGAACACCACTCAAATAACTCTACGGTTTGTCGAAGTTTGTCAAGCATACCATCATCAAACTTACAAAAGAGGAGGGTATCATCAGCATATTGGAGAATGGGGACACGAATCTTCTCTTTTCCCACCATAAAACCTTCAAACAGCCCATTACTATGAAGTTTATCTAGTAAAGCTCCCAACACCTCACTAATTAATAAAAAAAAGGAAAGGTGAGAGCGGGTCTCCTTGCCTAATACCCCTTGAAGCAAAGATCCTTCCTCTTCCAACACCTCATTAATTAATAAAAAAAGGAAAGGTGAGAGCGGGTTTCCTTGCCTAATACCCCTTGTAGCAAAGATCCTTCCTCTTGGCCTTCCATTAATGAATATTGAAAATTTTGTTTTCGTGATGCACCCCATAATCCATGAAATCCAATGATCATCAAAGTTTTTGTAGTGCATGACTTTTTTAAGAAATTTCCAATCCACTCGATCAAAAGCTTTTTCTAGATCCAATTTAAGGATCCAACCTTTTTTCTTCTTGGCATGATATTCGTCGACTACTTCATTGGCTATTAGAATTGGACCAAGAATTTGTCTTCCCTCTATAAAAGCACTCTGAGTTGGAGGAATGATACTGGGCATTACCTTCTTTAATCTTTCAACCAATATTTTTGCAATTATCTTATAAACCGAAGTACTGAGACTTATTGGCCTTTGGCCTGAAATCCTTAACTTGGACCGCATCTTCTTTTTTCTGGATTAGGCAAATGAAGTTCTCTTGAATGCAAGCATTAAGTCTTCCTTTTTCATAAAATTGCTCAAATAAGATCCGAAAGTTCTCCTTCACCATATCCCAATAATTTAGGAAAAATTCAATTGTGAATCCGTCGGGCTCTAGAGCTTTACTCTTACCAAGAGACTTTAAAGCAACTTAAATTTTCTCTATTGCAAAGTGAGAAATGAGCATCGAGTTCTCTTAAAAGCAGTGACACCCGGACAATCAAATTTAGAGGAGTATAGTGTAATCCAAGGGATTTTGTATACAAGGTATCATAAAATCCCAAAATTAGGCTTTCAATTTCCCTGAATGAGATGGTTGCCTCTCCTTGATCATTTATCAATTCTGAAATTAGGTTTCTTCTTTTCTTTGTAGCTAGAAAGCGATGAAAAAATCTGGTATTCTCATCTCCCAGTCTAATTCAATTTAATTTACTTTTTTGGATTAAACTACGCTCTTCCTCCCGGTAAAGATTTAATAACTCAATCCTTAAATAGTATCTTCTGTCCATTTCCAGTGTTGAAGTGATCGAGTTTTCGGCCTTGTTATCAAATTTCCCAATTTCTTCAAGCAACTCTTCTTCTTTCAATTTCTATCTCTCTACAAACTCACTGTGCCAAGCCTTTATAGCAGATTTTACCGATGATTATTATTGAAAAAGAGGGAAGCGGAAAAGACACAAGGTTTACGTGGAAAACCCTAATTCAGGGAGAAAAAACCACAATGCAACTTCTCTCTATATTAATTTGATACATACGAATGTTACAGGGGGGAAAATAAATAGAGACCAAATATCTATAAAAGGAAAAAATATTGGGGAATATAAAAGGAAAATACAAAATCTCCCAAATATTCTCTTTTTATTTTCAACACTCCCCCACAAGATGAGACATAAATATCAATGAGACCCATCTTGCTAACACATGCGTCAAAGCTCTGCTTAAGTAACCCCTTGGTAAGAACATCAACAACTTGTTGGCTAGAAGGGATATAAGGAATGCAAATGCTTCCGTTTTCTAGTTTTTCCTTTATGAAGTGTCTATCAATATCCACATGTTTTGTTCTATCATGCTGATTTGGATTGTTTGCAATGCTAATAGCAGCTTTATTATCACAATAAAGTTTCATTGGTAGTTCACTACTTTGGATAGAACTTTCTTCAACCAGATTTCTTCACAGATGCCATGACTCATAGCTCTGTATTTCGCTTCAGCACTGCTTCTAGCAACCACACTTTGTTTTTTACTTCCTCAAGTTACAAGGTTACCCCAAACAAAGGTACAGTAGTCAAAGGTAGATTTTCTATCAATCGCTTATCCTGCCCAGTCAGAGTCTGTATAGGCTTCAATGCATTTTCTGTCGGATTTTCTAAACATCAACCCTTTTCCTGGTGTGCTTTTCAAATATCTCAGAATTCTGTTTATAACTTCCATGTGTTCCTTGTAGGGAGCCTGCATGAACTGGCTCACAACGCTGACAGCATAGGAAATGTTTGGTCTGGTGTGCGCTAGGTAAATTAGTCTTCCAACTAGACGTTGATATCTTTTTTTGTTAACAGGAACTTTGTCAACTGACTCTCCCAATTTGGCATTAGACTCAATAGGAGTGTCAGCAGACCTGTATCTGGTTATACCTGTTTCTTTTAGTAAATCAATAGTGTACTTTCGTTGAGAAAGGGAGATTCCTTCTTTTGACCTCGCCACCTCCATCCCAAGAAAATACTTCAGGTTTCCTAGGTCTTTGATTTCAAATTCGTCTACATCATTTTTTGTTTCAGCTTGTTGTTTTCAGCAGTATCATCTCCTGATAAGACAATGTCATCAACGTACACAATCAGAACGGCAACCTTACTTGAGACAGACCTTTTTGTAAACAAGGTATGGTCAGAGTGTCTTTGAGTGAAGCCTTGGGACTTAACTAAGGTGGTAAATCTTTCAAACCACGCTCTCGGTGACTGTTGTAACCCATATAGGGCCTTTATAAGCTTGCACACATTCTGGTCAAATTGGGCTTCAAAGCCAGGAGGAGGGCTCATATACACCTCTTCTTCTAAATCACCCTTTAAAAAGTGTTTTTCACATCTAGTTGATAAAGAGGCCAATCCTTGTTGACAGCAACCGATAGAAGAACCCTGATCGTGTTTAACTTTGCAACAGGAGAGAAAGTCTCAGAATAGTCTACCCCAAATGTCTGAGTGAACCCTTTTGCTACAAGCTTGGCTTTATACCTGTCAAGAGTTCTGTCAGATTTATACTTCACTATGAACATCCACTTACATCCAACTAGTTTATGCCCTTTCGGAAGAGCAACTTGGTGCTATGTATTATTTTTCTCAAGAGCTCTCATTTCTTCCATAACGGTAGCCTTCCACTCAGGAATTCCCATAGCCACATATATGTTCTTTGATATAGTTACAGTGTCAAGGCTGGCAGTAAACGCTCTGAACTTAGAAGATAGATTGTTATAAGAAAGGAAGCTATACATGGGATACCAGGTGCAGGACCTTGTGCCCTTTCTCAGAGCAATGGGCATGTCAAGAGTGGCATCATACTCTCTTGGTTTGTCGAGTTCTTCTTCAATTGTGGAATTCTGAGGCATGATCTCATTTTCATTCTCTTGAACTGTTGTTGACACTACATCGCTCTCAGCAACCTGGTTATTTTCTGTCGTATCATCTCTATTATTCTCTACCGGCAGTTTTGTCAAATCAACAATATCATTTTCAACACAAACATTTTCAGCGCAAGCAATATTATTATCAGGGTCAGTAGTACCTTGAGCCTGTGTTGGTTCAGAAGATTGGACCGGAGCTGGCATGTCAGGGCTACTATATCCTTTCTAAGATTCTTCCTGTAGTACGTTATCCATGGGACCTGTCTGGTGGGTAGGACAATGTCGTGGGTTGTCAGGATGGGTTCAGGAAGAGGATTAGGATAGTTAGTCTCTTCATTACTACTCTCCCCCTGAAGAGGACTAACGGGAAAGAAAGGTTTATCTTCCGAAAAAGTGATATCTATAGAGATGAAAAATAACATCATCCGGTGAGAAAGCCACATGACAGTTTAGATCTCTGGTTATCTTACTCACAGACAATAATTTATAGGAGATTTTAGGAACATGCAACACATTCTGTAATATCAAACCATCGAATGGAGAAATGTGACCCTTGCTGGCAACAGGGACAAGTGTTCTATTAGCAATCCGGATTTTTTCATTACCAGCACACGGATGATAAGAGAGGAAATTGTTAGAAGTTCCAGTTAGATGGTCTGTAGCTCCTGAATCAAGGATCCAAAGTTTCTTGCTAGTAATACTGAGGAGACTCAAGGATTGGGAAATACCTGATTGCGCAATTGCCCCAAGAGAGGAAGTACCAGTGTCAGCTGGGTAGTTCTCCTGATGTTGTGGCTAAAAGCCACTAGTAGTCTCACTCACCAGAGCCTGGTTGGGTTTGTTGTTTGGAGGTCGTCGTCTGCCATTCGGGGGCTGACCATGTAACTTCCAACACTAATCCTTCGTGTGCCATGGTTTCTTACAGTGTTCACATACTGGAGGCGGTTTCCCGTTCTGCTTGTCTCCAGTAGTAACAGATGATTTAGCATTGAAGGCGGCAGAATCAATTACGGAGGTAGCCATGATATTCATGGCACTCGATCTATCTTCCTCCAGACGGACCCCTGAACATACTTCCATCAGGGTCAGTATTCGGCTCAGCATTCTGTCTCTTGGAGTAAAGTTTTTGAACAACATCCTAAATATCCCGAGTAGTAGCTGCATACAACAGAGGCTTTCCAATTTGAGGTTATATGCTGTGAATTAACAGAGATCGGAGTAATGAGTTTTCTCCGTTCCAGATGCGCTCTTGAGGGTCTCCAGGTCTAGGTTTCGGTACCTCACCAGTTAGATACCCAAATTTATGGCGTCCTTCAAGAACCATTTTAACAGATTGAGACTAGGAGAAATAATTCTGGCCATTTAACTTTTCACGAACAATTAGCCTTGTGGAGTTTCCCATAGATCCAGACAATTACAGTCCAGGAGTTAAGGTTGGGAAAAAGTTATCGAATTCTCAGAATACAGCGGTAGTTCTGACTAGACACCCGAGCCTCCTGCACTTTGATTGATGGTGGTAGAGGCGCCAAGCGTTGCCTCAAGAGTAGGGATTTGTTGTTGGAAGGCCTGAAGGTTCGTTAATTGTTGTTAAATCATGACCAAAGATAAGCTTGTCGACGGTTCACTATTCTCGAGCTGAAAATAAGTGTTTGGAGCATATGTAGCCGATCTATGGTCAGAAAATCTAGGGAAGATGTGCCGATTTGTGGTTCCAGCATCAACTCCACTCGCTTGAGGTCGTAGATCTGCGTCGGGGAAGGAGGATCCGACAATCGGAGCTCGGGTTGAAGTTCAAGCAGCCGTCGAACTCGTCAAAAAATGCAGATCTGCGTCGGGGAAGGAAGAACCGGCGACTGGTGCTCGGGTTGGAGGTCCAGCAGTCGCCAAACTCGTCAGAAACCACCGGTCGATGGTGTTTTGGTCGGAGAAGAGAGATCCGATGTTGGGAACATGGGTGGACTGTCCAGAGGCCGTTGAACTCGCCAAGGATTGCCGATCTAGGGCGTTTTGGATGGCGGCGGTGGCTGCGCTAAGGTTTAGGGTCAGGAGATACAGGTCGACGGCGGCAGCGGCGGGAGGTTTCGTTGGCAATGGCAGATCTAGGGTTTTAGACTCATGTAGGGTTTGGTTGTTGTCAATGACGGCTAGGGTTTCGTCGCCATGCTCTGATACCATATTGAAAAAGAAGGAAGGGGAAAAGACACAAAGTTTACGTGGAAAACCCTAATTCAGGGAGAAAAAACCACGATACAACTTTTCTTTCTATATTAATTTGATACATTCAAATGTTACAAGGGGAAAAATGAATAGAGACCAAATATCTATAAAAGGAAAAGATATTGGGGAATATAAAAGGAAAATAGAAAATCTACAAAATCTTCCAAATATTCTCTTTTTATTTTCAACAATTATAATGTAGAGCATGTTCTTTGGACTGTTTAATTTGATCTGGATAGTCTTCTTGTTGAAAAGCCAATAGGAAAAGTTTGTCAATTTGAATTGGGCTTAAATATATCTAAATTGCTCCAGTAATGTTCTGTTTGCAATTGATTAGAGCTTAGACTTCTATTTGTTGGGACATATTTTTTTAGTTGGACAAGCTACTAAGTCTGGAGTATTGCAGGAAAATCTCTCAAAGGTCAATCACAAAAGGTTCAACAGGCTGTTTTGGAGGTAGGCAATCAGGGTTTGCGTGTACTATCCTTATTAGTTACTCTATTAGTTACTTGTACTGA

mRNA sequence

ATGATGCATCAACTCCACTCGCTTGAGGTCGTAGATCTGCGTCGGGGAAGGAGGATCCGACAATCGGAGCTCGGGTTGAAGTTCAAGCAGCCGTCGAACTCGTCAAAAAATGCAGATCTGCGTCGGGGAAGGAAGAACCGGCGACTGGTGCTCGGGTTGGAGGTCCAGCAGTCGCCAAACTCGTCAGAAACCACCGGTCGATGTTACTTGTACTGA

Coding sequence (CDS)

ATGATGCATCAACTCCACTCGCTTGAGGTCGTAGATCTGCGTCGGGGAAGGAGGATCCGACAATCGGAGCTCGGGTTGAAGTTCAAGCAGCCGTCGAACTCGTCAAAAAATGCAGATCTGCGTCGGGGAAGGAAGAACCGGCGACTGGTGCTCGGGTTGGAGGTCCAGCAGTCGCCAAACTCGTCAGAAACCACCGGTCGATGTTACTTGTACTGA

Protein sequence

MMHQLHSLEVVDLRRGRRIRQSELGLKFKQPSNSSKNADLRRGRKNRRLVLGLEVQQSPNSSETTGRCYLY
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..71
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..71

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc11G08780.2Clc11G08780.2mRNA