Clc11G08690 (gene) Watermelon (cordophanus) v2

Overview
NameClc11G08690
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
LocationClcChr11: 10259372 .. 10260283 (-)
RNA-Seq ExpressionClc11G08690
SyntenyClc11G08690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGGGTACCAATGAGAAACTAAAAGCTTCAAACTTCTCAGCTTCACTTTTAAAGATTGGACGTTGGGAGGTCTTTATTTAATTATTAAATATTGTTGTCCTACTCGTATTGGGTTTGTAAAGTAGTTGTCAGCTGACCTATTTTATGATGACAATACAAATTAAGACATAAAGGTGATTTAGTGGCGAAGTGTTACTACGCTAAGCATAAGCTTGTATGGGAAATCCTTGAGGGTGGACTCAAAAGTAAAATAGAGATACAATGGTCTGATATTATGGGTTTAAAATTGAATTGTCATTATTAATGTTTTGTGACAGATTTTTAATGTCAATGTAAAGGCTTAATTGATAGAAAAAGTCAAATTTTTGGATAATGATAAATTGTCATTGAAAATATTATCATGATAGATATTGAACGTCAATAAATGTTTATTCTTGACTGTATTAAAATGACATGAAATAATCAATAATGACTCATTTTTCATGTGTCATCTATACACTTTTCTTGATGGTGGATTCAAAGACTAAAAAAAAAGTCAAGAAATATGTTAATGACAAAATTGAGTGATAAAAACCTATTTTTGTTGTAGTGGGAAAGCCAAAACTATAAGTTTGTATACTAGATCAAGTGAGGCTATGAATGTTTTACTCTCAAACCAGACCATTCTATTACTTATGTGCAAAGGGTCTTGTTTTTTTACAAATGAGATTAACTCTTCTTTGCCTAGATTTTTTTTTTTTTTTTTTTTTTGTGCTTTTGAAGGAATTTGAAGACTTATTCCCCAAGGAGATGCTTAGTGGGTTACCACCACCTATGGGGATTGAGCATAAGATTGATTTCATTCCGAGAGTGGCCATTCCAAACCGTCCAACATATAGGACTAATCCACAGGAGGCCGAAGAGATATAA

mRNA sequence

ATGCTGGGTACCAATGAGAAACTAAAAGCTTCAAACTTCTCAGCTTCACTTTTAAAGATTGGACGTTGGGAGGAATTTGAAGACTTATTCCCCAAGGAGATGCTTAGTGGGTTACCACCACCTATGGGGATTGAGCATAAGATTGATTTCATTCCGAGAGTGGCCATTCCAAACCGTCCAACATATAGGACTAATCCACAGGAGGCCGAAGAGATATAA

Coding sequence (CDS)

ATGCTGGGTACCAATGAGAAACTAAAAGCTTCAAACTTCTCAGCTTCACTTTTAAAGATTGGACGTTGGGAGGAATTTGAAGACTTATTCCCCAAGGAGATGCTTAGTGGGTTACCACCACCTATGGGGATTGAGCATAAGATTGATTTCATTCCGAGAGTGGCCATTCCAAACCGTCCAACATATAGGACTAATCCACAGGAGGCCGAAGAGATATAA

Protein sequence

MLGTNEKLKASNFSASLLKIGRWEEFEDLFPKEMLSGLPPPMGIEHKIDFIPRVAIPNRPTYRTNPQEAEEI
Homology
[Close]
BLAST of Clc11G08690 vs. NCBI nr
Match: XP_022158760.1 (uncharacterized protein LOC111025226 [Momordica charantia])

HSP 1 Score: 83.2 bits (204), Expect = 1.0e-12
Identity = 38/48 (79.17%), Postives = 39/48 (81.25%), Query Frame = 0 

Query: 25  EFEDLFPKEMLSGLPPPMGIEHKIDFIPRVAIPNRPTYRTNPQEAEEI 73
           EFE+LFPKEM SGLPP  GIEHKIDFIP   IPNRP YRTNP E EEI
Sbjct: 160 EFEELFPKEMPSGLPPLRGIEHKIDFIPGATIPNRPAYRTNPSEVEEI 207

[Close]
BLAST of Clc11G08690 vs. NCBI nr
Match: KYP67622.1 (Transposon Ty3-I Gag-Pol polyprotein [Cajanus cajan])

HSP 1 Score: 83.2 bits (204), Expect = 1.0e-12
Identity = 41/75 (54.67%), Postives = 51/75 (68.00%), Query Frame = 0 

Query: 1   MLGTNEKLKASNFSASLLKIG---RWEEFEDLFPKEMLSGLPPPMGIEHKIDFIPRVAIP 60
           +L   E L A+NF    L  G     +EF+DLFPKE+ SGLPP  GIEH+ID +P  ++P
Sbjct: 61  LLYVKETLAATNFELESLPKGIQNLLKEFDDLFPKEVPSGLPPLRGIEHQIDLVPGASLP 120

Query: 61  NRPTYRTNPQEAEEI 73
           NRP YRTNPQE +EI
Sbjct: 121 NRPAYRTNPQETKEI 135

[Close]
BLAST of Clc11G08690 vs. NCBI nr
Match: XP_022636128.1 (uncharacterized protein LOC106761339 [Vigna radiata var. radiata])

HSP 1 Score: 83.2 bits (204), Expect = 1.0e-12
Identity = 36/48 (75.00%), Postives = 41/48 (85.42%), Query Frame = 0 

Query: 25  EFEDLFPKEMLSGLPPPMGIEHKIDFIPRVAIPNRPTYRTNPQEAEEI 73
           EF+DLFPKE+  GLPP  GIEH+IDFIPR  +PNRPTYRTNPQE +EI
Sbjct: 478 EFDDLFPKEIPKGLPPIRGIEHQIDFIPRATLPNRPTYRTNPQETKEI 525

[Close]
BLAST of Clc11G08690 vs. NCBI nr
Match: XP_016733955.1 (uncharacterized protein LOC107944659 [Gossypium hirsutum])

HSP 1 Score: 82.4 bits (202), Expect = 1.7e-12
Identity = 40/72 (55.56%), Postives = 51/72 (70.83%), Query Frame = 0 

Query: 1   MLGTNEKLKASNFSASLLKIGRWEEFEDLFPKEMLSGLPPPMGIEHKIDFIPRVAIPNRP 60
           ++GTNE   A   S   L     +EF D+F KE+ SGLPP  GIEH+IDF+PR AIPNRP
Sbjct: 87  LMGTNELNDAIPSSIKFL----LQEFNDVFSKEIPSGLPPIQGIEHQIDFVPRAAIPNRP 146

Query: 61  TYRTNPQEAEEI 73
           TYR+NP+E +E+
Sbjct: 147 TYRSNPKETKEL 154

[Close]
BLAST of Clc11G08690 vs. NCBI nr
Match: KYP77646.1 (Transposon Ty3-I Gag-Pol polyprotein, partial [Cajanus cajan])

HSP 1 Score: 81.6 bits (200), Expect = 3.0e-12
Identity = 41/75 (54.67%), Postives = 50/75 (66.67%), Query Frame = 0 

Query: 1   MLGTNEKLKASNFSASLLKIG---RWEEFEDLFPKEMLSGLPPPMGIEHKIDFIPRVAIP 60
           +L   E L A NF    L  G     +EF+DLFPKE+ SGLPP  GIEH+ID +P  ++P
Sbjct: 250 LLYVKETLAAINFEFESLPKGIKNLLKEFDDLFPKEVPSGLPPLRGIEHQIDLVPGASLP 309

Query: 61  NRPTYRTNPQEAEEI 73
           NRP YRTNPQE +EI
Sbjct: 310 NRPAYRTNPQETKEI 324

[Close]
BLAST of Clc11G08690 vs. ExPASy TrEMBL
Match: A0A3Q0EWL0 (uncharacterized protein LOC106761339 OS=Vigna radiata var. radiata OX=3916 GN=LOC106761339 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 4.9e-13
Identity = 36/48 (75.00%), Postives = 41/48 (85.42%), Query Frame = 0 

Query: 25  EFEDLFPKEMLSGLPPPMGIEHKIDFIPRVAIPNRPTYRTNPQEAEEI 73
           EF+DLFPKE+  GLPP  GIEH+IDFIPR  +PNRPTYRTNPQE +EI
Sbjct: 478 EFDDLFPKEIPKGLPPIRGIEHQIDFIPRATLPNRPTYRTNPQETKEI 525

[Close]
BLAST of Clc11G08690 vs. ExPASy TrEMBL
Match: A0A151TKN6 (Transposon Ty3-I Gag-Pol polyprotein OS=Cajanus cajan OX=3821 GN=KK1_023966 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 4.9e-13
Identity = 41/75 (54.67%), Postives = 51/75 (68.00%), Query Frame = 0 

Query: 1   MLGTNEKLKASNFSASLLKIG---RWEEFEDLFPKEMLSGLPPPMGIEHKIDFIPRVAIP 60
           +L   E L A+NF    L  G     +EF+DLFPKE+ SGLPP  GIEH+ID +P  ++P
Sbjct: 61  LLYVKETLAATNFELESLPKGIQNLLKEFDDLFPKEVPSGLPPLRGIEHQIDLVPGASLP 120

Query: 61  NRPTYRTNPQEAEEI 73
           NRP YRTNPQE +EI
Sbjct: 121 NRPAYRTNPQETKEI 135

[Close]
BLAST of Clc11G08690 vs. ExPASy TrEMBL
Match: A0A6J1DWQ2 (uncharacterized protein LOC111025226 OS=Momordica charantia OX=3673 GN=LOC111025226 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 4.9e-13
Identity = 38/48 (79.17%), Postives = 39/48 (81.25%), Query Frame = 0 

Query: 25  EFEDLFPKEMLSGLPPPMGIEHKIDFIPRVAIPNRPTYRTNPQEAEEI 73
           EFE+LFPKEM SGLPP  GIEHKIDFIP   IPNRP YRTNP E EEI
Sbjct: 160 EFEELFPKEMPSGLPPLRGIEHKIDFIPGATIPNRPAYRTNPSEVEEI 207

[Close]
BLAST of Clc11G08690 vs. ExPASy TrEMBL
Match: A0A1U8N4Q4 (uncharacterized protein LOC107944659 OS=Gossypium hirsutum OX=3635 GN=LOC107944659 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 8.4e-13
Identity = 40/72 (55.56%), Postives = 51/72 (70.83%), Query Frame = 0 

Query: 1   MLGTNEKLKASNFSASLLKIGRWEEFEDLFPKEMLSGLPPPMGIEHKIDFIPRVAIPNRP 60
           ++GTNE   A   S   L     +EF D+F KE+ SGLPP  GIEH+IDF+PR AIPNRP
Sbjct: 87  LMGTNELNDAIPSSIKFL----LQEFNDVFSKEIPSGLPPIQGIEHQIDFVPRAAIPNRP 146

Query: 61  TYRTNPQEAEEI 73
           TYR+NP+E +E+
Sbjct: 147 TYRSNPKETKEL 154

[Close]
BLAST of Clc11G08690 vs. ExPASy TrEMBL
Match: A0A151UE82 (Transposon Ty3-I Gag-Pol polyprotein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_049607 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.4e-12
Identity = 41/75 (54.67%), Postives = 50/75 (66.67%), Query Frame = 0 

Query: 1   MLGTNEKLKASNFSASLLKIG---RWEEFEDLFPKEMLSGLPPPMGIEHKIDFIPRVAIP 60
           +L   E L A NF    L  G     +EF+DLFPKE+ SGLPP  GIEH+ID +P  ++P
Sbjct: 250 LLYVKETLAAINFEFESLPKGIKNLLKEFDDLFPKEVPSGLPPLRGIEHQIDLVPGASLP 309

Query: 61  NRPTYRTNPQEAEEI 73
           NRP YRTNPQE +EI
Sbjct: 310 NRPAYRTNPQETKEI 324

The following BLAST results are available for this feature:
BLAST of Clc11G08690 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022158760.11.0e-1279.17uncharacterized protein LOC111025226 [Momordica charantia][more]
KYP67622.11.0e-1254.67Transposon Ty3-I Gag-Pol polyprotein [Cajanus cajan][more]
XP_022636128.11.0e-1275.00uncharacterized protein LOC106761339 [Vigna radiata var. radiata][more]
XP_016733955.11.7e-1255.56uncharacterized protein LOC107944659 [Gossypium hirsutum][more]
KYP77646.13.0e-1254.67Transposon Ty3-I Gag-Pol polyprotein, partial [Cajanus cajan][more]
BLAST of Clc11G08690 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc11G08690 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A3Q0EWL04.9e-1375.00uncharacterized protein LOC106761339 OS=Vigna radiata var. radiata OX=3916 GN=LO... [more]
A0A151TKN64.9e-1354.67Transposon Ty3-I Gag-Pol polyprotein OS=Cajanus cajan OX=3821 GN=KK1_023966 PE=4... [more]
A0A6J1DWQ24.9e-1379.17uncharacterized protein LOC111025226 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A1U8N4Q48.4e-1355.56uncharacterized protein LOC107944659 OS=Gossypium hirsutum OX=3635 GN=LOC1079446... [more]
A0A151UE821.4e-1254.67Transposon Ty3-I Gag-Pol polyprotein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_... [more]
BLAST of Clc11G08690 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc11G08690.1Clc11G08690.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding