Clc11G08115 (gene) Watermelon (cordophanus) v2

Overview
NameClc11G08115
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description30S ribosomal protein S8, chloroplastic
LocationClcChr11: 7859231 .. 7860184 (-)
RNA-Seq ExpressionClc11G08115
SyntenyClc11G08115
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATTTGATTCCATTGGACGGTACCAACGAAATCGAGTGCGAACTCCCATTTCATTTTTTATTGAATTAACCGATCAACTTGCTTTTCCATCGAACATTTATTTTGGATTTCAATAATTTTCGAAACAAAAAAATTTCGATTGTTGATTCATCGCCAGAGATGGCTTAGAACCAATAGTTCATTATCTAATGGATTTTTTCGTTCTAATACTCCATCCGAGAGTTATCAGTATTTATCAAATCTGTTCCTATCTAACGGAACACTATTGGATCAAATGACAAAGACATTGTCTTTTCGGATCCAGCGAAAGCAAAGGCAGCGAAGCTTCAAGGAAGCCCCTTTTGACTCGACAGTGGTGACAGAGAGCAAGCTACTTTATGGGAGTAAGTGGGAGAGGGTAGTTGGCAATGGATTGAACCCCTCAGTAGGAAGAGGTTGAGGAGGATAGAATAGGCTGTGATGCCAGAAGAAGGTCTTGAGAGATCCTTTGAATACGACCAGGGGAATAGAAGCCCACGGAGCGGTAGGCTAAGCCGGAAAGAGAGAGAGCAGCTGGTTCTATAACTAACATAAGAACCTCTATTCGCAATGCTGACATGAATAGAAAAGGAATGGTTCGAATACCATCTACTAACATCACCGAAAACATTGTTAAAATACTTTTACGAGAAGGTTTTATTGAAAACGTACGGAAACATCGTGAAAGCAACAAGGATTTTTGGGTTTTAACCCTACGACATAGAAGAAATAGGAAAGGACCATATAAAACGATTTTAAATTTAAAACGGATCAGTCGACCTGGTCTCCGAATATATTCTAACTATCAACAAATTCCTAGAATTTTAGGCGGAATGGGCAATGTAATTCTTTCTACTTCTCGGGGTATAATGACAGACCGAGAAGCTCGACTACAGGGAATCGGCGGCGAAATTTTGTGTTATATATGGTAA

mRNA sequence

ATGGAATTTGATTCCATTGGACGGTACCAACGAAATCGAAGATGGCTTAGAACCAATAGTTCATTATCTAATGGATTTTTTCGTTCTAATACTCCATCCGAGAGTTATCAGTATTTATCAAATCTGTTCCTATCTAACGGAACACTATTGGATCAAATGACAAAGACATTGTCTTTTCGGATCCAGCGAAAGCAAAGGCAGCGAAGCTTCAAGGAAGCCCCTTTTGACTCGACAGTGGTGACAGAGAGCAAGCTACTTTATGGGAGTAAGTGGGAGAGGGCTAAGCCGGAAAGAGAGAGAGCAGCTGGTTCTATAACTAACATAAGAACCTCTATTCGCAATGCTGACATGAATAGAAAAGGAATGGTTCGAATACCATCTACTAACATCACCGAAAACATTGTTAAAATACTTTTACGAGAAGGTTTTATTGAAAACGTACGGAAACATCGTGAAAGCAACAAGGATTTTTGGGTTTTAACCCTACGACATAGAAGAAATAGGAAAGGACCATATAAAACGATTTTAAATTTAAAACGGATCAGTCGACCTGGTCTCCGAATATATTCTAACTATCAACAAATTCCTAGAATTTTAGGCGGAATGGGCAATGTAATTCTTTCTACTTCTCGGGGTATAATGACAGACCGAGAAGCTCGACTACAGGGAATCGGCGGCGAAATTTTGTGTTATATATGGTAA

Coding sequence (CDS)

ATGGAATTTGATTCCATTGGACGGTACCAACGAAATCGAAGATGGCTTAGAACCAATAGTTCATTATCTAATGGATTTTTTCGTTCTAATACTCCATCCGAGAGTTATCAGTATTTATCAAATCTGTTCCTATCTAACGGAACACTATTGGATCAAATGACAAAGACATTGTCTTTTCGGATCCAGCGAAAGCAAAGGCAGCGAAGCTTCAAGGAAGCCCCTTTTGACTCGACAGTGGTGACAGAGAGCAAGCTACTTTATGGGAGTAAGTGGGAGAGGGCTAAGCCGGAAAGAGAGAGAGCAGCTGGTTCTATAACTAACATAAGAACCTCTATTCGCAATGCTGACATGAATAGAAAAGGAATGGTTCGAATACCATCTACTAACATCACCGAAAACATTGTTAAAATACTTTTACGAGAAGGTTTTATTGAAAACGTACGGAAACATCGTGAAAGCAACAAGGATTTTTGGGTTTTAACCCTACGACATAGAAGAAATAGGAAAGGACCATATAAAACGATTTTAAATTTAAAACGGATCAGTCGACCTGGTCTCCGAATATATTCTAACTATCAACAAATTCCTAGAATTTTAGGCGGAATGGGCAATGTAATTCTTTCTACTTCTCGGGGTATAATGACAGACCGAGAAGCTCGACTACAGGGAATCGGCGGCGAAATTTTGTGTTATATATGGTAA

Protein sequence

MEFDSIGRYQRNRRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTKTLSFRIQRKQRQRSFKEAPFDSTVVTESKLLYGSKWERAKPERERAAGSITNIRTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMGNVILSTSRGIMTDREARLQGIGGEILCYIW
Homology
[Close]
BLAST of Clc11G08115 vs. NCBI nr
Match: YP_009326025.1 (ribosomal protein S8 [Citrullus lanatus] >YP_009348067.1 ribosomal protein S8 [Citrullus mucosospermus] >YP_009420830.1 ribosomal protein S8 [Citrullus colocynthis] >YP_009431678.1 ribosomal protein S8 [Citrullus rehmii] >YP_009456181.1 ribosomal protein S8 [Lagenaria siceraria] >YP_010131129.1 ribosomal protein S8 [Benincasa hispida] >APW82923.1 ribosomal protein S8 [Citrullus lanatus subsp. vulgaris] >QNM38566.1 ribosomal protein S8 [Lagenaria siceraria var. microcarpa] >QZL38717.1 ribosomal protein S8 [Citrullus ecirrhosus] >AHM88713.1 ribosomal protein S8 [Lagenaria siceraria] >AHM88772.1 ribosomal protein S8 [Lagenaria siceraria])

HSP 1 Score: 253.1 bits (645), Expect = 2.4e-63
Identity = 126/130 (96.92%), Postives = 127/130 (97.69%), Query Frame = 0 

Query: 104 SITNIRTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLR 163
           +I NI TSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLR
Sbjct: 5   TIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLR 64

Query: 164 HRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMGNVILSTSRGIMTDREARLQG 223
           HRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG VILSTSRGIMTDREARLQG
Sbjct: 65  HRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMGIVILSTSRGIMTDREARLQG 124

Query: 224 IGGEILCYIW 234
           IGGEILCYIW
Sbjct: 125 IGGEILCYIW 134

[Close]
BLAST of Clc11G08115 vs. NCBI nr
Match: YP_009752870.1 (ribosomal protein S8 [Baijiania yunnanensis] >QIT05942.1 ribosomal protein S8 [Baijiania yunnanensis])

HSP 1 Score: 251.9 bits (642), Expect = 5.3e-63
Identity = 125/130 (96.15%), Postives = 127/130 (97.69%), Query Frame = 0 

Query: 104 SITNIRTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLR 163
           +I NI TSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLR
Sbjct: 5   TIANILTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLR 64

Query: 164 HRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMGNVILSTSRGIMTDREARLQG 223
           HRRNRKGPYKTILNLKRISRPGLRIYSNYQ+IPRILGGMG VILSTSRGIMTDREARLQG
Sbjct: 65  HRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREARLQG 124

Query: 224 IGGEILCYIW 234
           IGGEILCYIW
Sbjct: 125 IGGEILCYIW 134

[Close]
BLAST of Clc11G08115 vs. NCBI nr
Match: YP_009431592.1 (ribosomal protein S8 [Citrullus amarus] >APW82498.1 ribosomal protein S8 [Citrullus lanatus subsp. vulgaris] >APW82583.1 ribosomal protein S8 [Citrullus lanatus subsp. vulgaris] >ASY96178.1 ribosomal protein S8 [Citrullus amarus])

HSP 1 Score: 251.5 bits (641), Expect = 7.0e-63
Identity = 125/130 (96.15%), Postives = 127/130 (97.69%), Query Frame = 0 

Query: 104 SITNIRTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLR 163
           +I NI TSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLR
Sbjct: 5   TIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLR 64

Query: 164 HRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMGNVILSTSRGIMTDREARLQG 223
           HRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG VILSTSRGI+TDREARLQG
Sbjct: 65  HRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMGIVILSTSRGIITDREARLQG 124

Query: 224 IGGEILCYIW 234
           IGGEILCYIW
Sbjct: 125 IGGEILCYIW 134

[Close]
BLAST of Clc11G08115 vs. NCBI nr
Match: YP_009525221.1 (ribosomal protein S8 [Hodgsonia macrocarpa] >YP_009560871.1 ribosomal protein S8 [Trichosanthes kirilowii] >YP_009674426.1 ribosomal protein S8 [Siraitia grosvenorii] >YP_009738237.1 ribosomal protein S8 [Siraitia siamensis] >YP_009751941.1 ribosomal protein S8 [Cyclanthera pedata] >YP_009752362.1 ribosomal protein S8 [Bryonia marmorata] >YP_009752447.1 ribosomal protein S8 [Trichosanthes tricuspidata] >YP_009753293.1 ribosomal protein S8 [Nothoalsomitra suberosa] >YP_009753655.1 ribosomal protein S8 [Trichosanthes wallichiana] >QIT04085.1 ribosomal protein S8 [Luffa aegyptiaca] >QKX48510.1 ribosomal protein S8 [Luffa acutangula] >AXR94584.1 ribosomal protein S8 [Hodgsonia macrocarpa] >AXR94670.1 ribosomal protein S8 [Hodgsonia macrocarpa] >AXR94753.1 ribosomal protein S8 [Hodgsonia macrocarpa])

HSP 1 Score: 251.5 bits (641), Expect = 7.0e-63
Identity = 125/130 (96.15%), Postives = 127/130 (97.69%), Query Frame = 0 

Query: 104 SITNIRTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLR 163
           +I NI TSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLR
Sbjct: 5   TIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLR 64

Query: 164 HRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMGNVILSTSRGIMTDREARLQG 223
           HRRNRKGPYKTILNLKRISRPGLRIYSNYQ+IPRILGGMG VILSTSRGIMTDREARLQG
Sbjct: 65  HRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREARLQG 124

Query: 224 IGGEILCYIW 234
           IGGEILCYIW
Sbjct: 125 IGGEILCYIW 134

[Close]
BLAST of Clc11G08115 vs. NCBI nr
Match: AHM91011.1 (ribosomal protein S8 [Lagenaria siceraria])

HSP 1 Score: 251.5 bits (641), Expect = 7.0e-63
Identity = 125/130 (96.15%), Postives = 126/130 (96.92%), Query Frame = 0 

Query: 104 SITNIRTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLR 163
           +I NI TSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLR
Sbjct: 5   TIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLR 64

Query: 164 HRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMGNVILSTSRGIMTDREARLQG 223
           HRRNRKGPYKTILN KRISRPGLRIYSNYQQIPRILGGMG VILSTSRGIMTDREARLQG
Sbjct: 65  HRRNRKGPYKTILNFKRISRPGLRIYSNYQQIPRILGGMGIVILSTSRGIMTDREARLQG 124

Query: 224 IGGEILCYIW 234
           IGGEILCYIW
Sbjct: 125 IGGEILCYIW 134

[Close]
BLAST of Clc11G08115 vs. ExPASy Swiss-Prot
Match: Q4VZK0 (30S ribosomal protein S8, chloroplastic OS=Cucumis sativus OX=3659 GN=rps8 PE=3 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 2.0e-65
Identity = 124/130 (95.38%), Postives = 127/130 (97.69%), Query Frame = 0 

Query: 104 SITNIRTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLR 163
           +I NI TSIRNADMNRKGMVRIP+TNITENIVKILLREGFIENVRKHRESNKDFWVLTLR
Sbjct: 5   TIANIITSIRNADMNRKGMVRIPATNITENIVKILLREGFIENVRKHRESNKDFWVLTLR 64

Query: 164 HRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMGNVILSTSRGIMTDREARLQG 223
           HRRNRKGPYKTILNLKRISRPGLRIYSNYQ+IPRILGGMG VILSTSRGIMTDREARLQG
Sbjct: 65  HRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRILGGMGIVILSTSRGIMTDREARLQG 124

Query: 224 IGGEILCYIW 234
           IGGEILCYIW
Sbjct: 125 IGGEILCYIW 134

[Close]
BLAST of Clc11G08115 vs. ExPASy Swiss-Prot
Match: Q49KW3 (30S ribosomal protein S8, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rps8 PE=3 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.8e-58
Identity = 113/130 (86.92%), Postives = 123/130 (94.62%), Query Frame = 0 

Query: 104 SITNIRTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLR 163
           +I +I TSIRNADMNRKG ++I STNITENIVKILLREGFI+NVRKH+E+NK F VLTLR
Sbjct: 5   TIADIITSIRNADMNRKGTIQIASTNITENIVKILLREGFIKNVRKHQENNKYFLVLTLR 64

Query: 164 HRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMGNVILSTSRGIMTDREARLQG 223
           HRRNRKGPY+TILNLKRISRPGLRIYSNYQ+IPRILGGMG VILSTSRGIMTDREARL+G
Sbjct: 65  HRRNRKGPYRTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREARLEG 124

Query: 224 IGGEILCYIW 234
           IGGEILCYIW
Sbjct: 125 IGGEILCYIW 134

[Close]
BLAST of Clc11G08115 vs. ExPASy Swiss-Prot
Match: A0ZZ70 (30S ribosomal protein S8, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps8 PE=3 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 9.2e-58
Identity = 112/130 (86.15%), Postives = 122/130 (93.85%), Query Frame = 0 

Query: 104 SITNIRTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLR 163
           +I +I TSIRNADMNRKG ++I STNITENIV+ILLREGFI+NVRKHRE NK F VLTLR
Sbjct: 5   TIADIITSIRNADMNRKGTIQIGSTNITENIVQILLREGFIDNVRKHRERNKYFLVLTLR 64

Query: 164 HRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMGNVILSTSRGIMTDREARLQG 223
           HRRNRKGP++TILNL+RISRPGLRIYSNYQQIPRILGGMG VILSTSRGIMTDREARL+G
Sbjct: 65  HRRNRKGPHRTILNLRRISRPGLRIYSNYQQIPRILGGMGIVILSTSRGIMTDREARLEG 124

Query: 224 IGGEILCYIW 234
           IGGEILCYIW
Sbjct: 125 IGGEILCYIW 134

[Close]
BLAST of Clc11G08115 vs. ExPASy Swiss-Prot
Match: Q2L942 (30S ribosomal protein S8, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rps8 PE=3 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 3.5e-57
Identity = 112/130 (86.15%), Postives = 121/130 (93.08%), Query Frame = 0 

Query: 104 SITNIRTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLR 163
           +I +I TSIRNADMNRKG ++I STNITENIVKILLREGFI+NVRKHRE NK F VLTLR
Sbjct: 5   TIADIITSIRNADMNRKGTIQIGSTNITENIVKILLREGFIDNVRKHRERNKYFLVLTLR 64

Query: 164 HRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMGNVILSTSRGIMTDREARLQG 223
           HRRNRKGP++TILNL+RISRPGLRIYSNYQQIPRILGGMG VILSTSRGIMTDREARL+G
Sbjct: 65  HRRNRKGPHRTILNLRRISRPGLRIYSNYQQIPRILGGMGIVILSTSRGIMTDREARLEG 124

Query: 224 IGGEILCYIW 234
           IGGEILC IW
Sbjct: 125 IGGEILCSIW 134

[Close]
BLAST of Clc11G08115 vs. ExPASy Swiss-Prot
Match: A7Y3I5 (30S ribosomal protein S8, chloroplastic OS=Ipomoea purpurea OX=4121 GN=rps8 PE=3 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.3e-56
Identity = 110/130 (84.62%), Postives = 120/130 (92.31%), Query Frame = 0 

Query: 104 SITNIRTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLR 163
           +I  I TSIRNADM+RK +VRI STNITENIV+ILLREGFIENVRKHRE NK+F+VLTLR
Sbjct: 5   TIAEIITSIRNADMDRKRVVRIASTNITENIVRILLREGFIENVRKHREKNKNFFVLTLR 64

Query: 164 HRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMGNVILSTSRGIMTDREARLQG 223
           HRRNRK PY+ I NLKRISRPGLRIYSNYQ+IP+ILGGMG VILSTSRGIMTDREARL+G
Sbjct: 65  HRRNRKRPYRNIFNLKRISRPGLRIYSNYQRIPKILGGMGVVILSTSRGIMTDREARLEG 124

Query: 224 IGGEILCYIW 234
           IGGEILCYIW
Sbjct: 125 IGGEILCYIW 134

[Close]
BLAST of Clc11G08115 vs. ExPASy TrEMBL
Match: A0A1P8LE42 (Ribosomal protein S8 OS=Citrullus mucosospermus OX=519315 GN=rps8 PE=3 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 1.2e-63
Identity = 126/130 (96.92%), Postives = 127/130 (97.69%), Query Frame = 0 

Query: 104 SITNIRTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLR 163
           +I NI TSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLR
Sbjct: 5   TIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLR 64

Query: 164 HRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMGNVILSTSRGIMTDREARLQG 223
           HRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG VILSTSRGIMTDREARLQG
Sbjct: 65  HRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMGIVILSTSRGIMTDREARLQG 124

Query: 224 IGGEILCYIW 234
           IGGEILCYIW
Sbjct: 125 IGGEILCYIW 134

[Close]
BLAST of Clc11G08115 vs. ExPASy TrEMBL
Match: X2F6H3 (30S ribosomal protein S8, chloroplastic OS=Lagenaria siceraria OX=3668 GN=rps8 PE=3 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 1.2e-63
Identity = 126/130 (96.92%), Postives = 127/130 (97.69%), Query Frame = 0 

Query: 104 SITNIRTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLR 163
           +I NI TSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLR
Sbjct: 5   TIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLR 64

Query: 164 HRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMGNVILSTSRGIMTDREARLQG 223
           HRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG VILSTSRGIMTDREARLQG
Sbjct: 65  HRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMGIVILSTSRGIMTDREARLQG 124

Query: 224 IGGEILCYIW 234
           IGGEILCYIW
Sbjct: 125 IGGEILCYIW 134

[Close]
BLAST of Clc11G08115 vs. ExPASy TrEMBL
Match: A0A1P8LEK4 (Ribosomal protein S8 OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=rps8 PE=3 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 1.2e-63
Identity = 126/130 (96.92%), Postives = 127/130 (97.69%), Query Frame = 0 

Query: 104 SITNIRTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLR 163
           +I NI TSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLR
Sbjct: 5   TIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLR 64

Query: 164 HRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMGNVILSTSRGIMTDREARLQG 223
           HRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG VILSTSRGIMTDREARLQG
Sbjct: 65  HRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMGIVILSTSRGIMTDREARLQG 124

Query: 224 IGGEILCYIW 234
           IGGEILCYIW
Sbjct: 125 IGGEILCYIW 134

[Close]
BLAST of Clc11G08115 vs. ExPASy TrEMBL
Match: A0A7T3QNL9 (Ribosomal protein S8 OS=Benincasa hispida OX=102211 GN=rps8 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 1.2e-63
Identity = 126/130 (96.92%), Postives = 127/130 (97.69%), Query Frame = 0 

Query: 104 SITNIRTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLR 163
           +I NI TSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLR
Sbjct: 5   TIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLR 64

Query: 164 HRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMGNVILSTSRGIMTDREARLQG 223
           HRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG VILSTSRGIMTDREARLQG
Sbjct: 65  HRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMGIVILSTSRGIMTDREARLQG 124

Query: 224 IGGEILCYIW 234
           IGGEILCYIW
Sbjct: 125 IGGEILCYIW 134

[Close]
BLAST of Clc11G08115 vs. ExPASy TrEMBL
Match: A0A343A8E6 (30S ribosomal protein S8, chloroplastic OS=Citrullus lanatus OX=3654 GN=rps8 PE=3 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 1.2e-63
Identity = 126/130 (96.92%), Postives = 127/130 (97.69%), Query Frame = 0 

Query: 104 SITNIRTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLR 163
           +I NI TSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLR
Sbjct: 5   TIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLR 64

Query: 164 HRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMGNVILSTSRGIMTDREARLQG 223
           HRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG VILSTSRGIMTDREARLQG
Sbjct: 65  HRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMGIVILSTSRGIMTDREARLQG 124

Query: 224 IGGEILCYIW 234
           IGGEILCYIW
Sbjct: 125 IGGEILCYIW 134

[Close]
BLAST of Clc11G08115 vs. TAIR 10
Match: ATCG00770.1 (ribosomal protein S8 )

HSP 1 Score: 211.8 bits (538), Expect = 5.7e-55
Identity = 108/130 (83.08%), Postives = 119/130 (91.54%), Query Frame = 0 

Query: 104 SITNIRTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLR 163
           +I +I TSIRNADMNRKG VRI STNITE+IVKILLREGFIENVRKHRE+N+ F +LTLR
Sbjct: 5   TIADIITSIRNADMNRKGTVRIGSTNITESIVKILLREGFIENVRKHRENNQYFLILTLR 64

Query: 164 HRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMGNVILSTSRGIMTDREARLQG 223
           HRRN+K  YKTILNLKRISRPGLRIYSN Q+IPRILGG+G VILSTS+GIMTDREARL+ 
Sbjct: 65  HRRNKKESYKTILNLKRISRPGLRIYSNSQRIPRILGGIGIVILSTSQGIMTDREARLKR 124

Query: 224 IGGEILCYIW 234
           IGGEILCYIW
Sbjct: 125 IGGEILCYIW 134

[Close]
BLAST of Clc11G08115 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 84.0 bits (206), Expect = 1.8e-16
Identity = 41/47 (87.23%), Postives = 45/47 (95.74%), Query Frame = 0 

Query: 11   RNRRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTKTL 58
            + +RWLRTNSSLSNGFFRSNT SESYQYLSNLF+SNGTLLD+MTKTL
Sbjct: 2232 QRQRWLRTNSSLSNGFFRSNTRSESYQYLSNLFISNGTLLDRMTKTL 2278

[Close]
BLAST of Clc11G08115 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 84.0 bits (206), Expect = 1.8e-16
Identity = 41/47 (87.23%), Postives = 45/47 (95.74%), Query Frame = 0 

Query: 11   RNRRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTKTL 58
            + +RWLRTNSSLSNGFFRSNT SESYQYLSNLF+SNGTLLD+MTKTL
Sbjct: 2232 QRQRWLRTNSSLSNGFFRSNTRSESYQYLSNLFISNGTLLDRMTKTL 2278

The following BLAST results are available for this feature:
BLAST of Clc11G08115 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_009326025.12.4e-6396.92ribosomal protein S8 [Citrullus lanatus] >YP_009348067.1 ribosomal protein S8 [C... [more]
YP_009752870.15.3e-6396.15ribosomal protein S8 [Baijiania yunnanensis] >QIT05942.1 ribosomal protein S8 [B... [more]
YP_009431592.17.0e-6396.15ribosomal protein S8 [Citrullus amarus] >APW82498.1 ribosomal protein S8 [Citrul... [more]
YP_009525221.17.0e-6396.15ribosomal protein S8 [Hodgsonia macrocarpa] >YP_009560871.1 ribosomal protein S8... [more]
AHM91011.17.0e-6396.15ribosomal protein S8 [Lagenaria siceraria][more]
BLAST of Clc11G08115 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q4VZK02.0e-6595.3830S ribosomal protein S8, chloroplastic OS=Cucumis sativus OX=3659 GN=rps8 PE=3 ... [more]
Q49KW31.8e-5886.9230S ribosomal protein S8, chloroplastic OS=Eucalyptus globulus subsp. globulus O... [more]
A0ZZ709.2e-5886.1530S ribosomal protein S8, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps8 ... [more]
Q2L9423.5e-5786.1530S ribosomal protein S8, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rps8 PE... [more]
A7Y3I51.3e-5684.6230S ribosomal protein S8, chloroplastic OS=Ipomoea purpurea OX=4121 GN=rps8 PE=3... [more]
BLAST of Clc11G08115 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1P8LE421.2e-6396.92Ribosomal protein S8 OS=Citrullus mucosospermus OX=519315 GN=rps8 PE=3 SV=1[more]
X2F6H31.2e-6396.9230S ribosomal protein S8, chloroplastic OS=Lagenaria siceraria OX=3668 GN=rps8 P... [more]
A0A1P8LEK41.2e-6396.92Ribosomal protein S8 OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=rps8 PE=3... [more]
A0A7T3QNL91.2e-6396.92Ribosomal protein S8 OS=Benincasa hispida OX=102211 GN=rps8 PE=4 SV=1[more]
A0A343A8E61.2e-6396.9230S ribosomal protein S8, chloroplastic OS=Citrullus lanatus OX=3654 GN=rps8 PE=... [more]
BLAST of Clc11G08115 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00770.15.7e-5583.08ribosomal protein S8 [more]
ATCG00860.11.8e-1687.23Chloroplast Ycf2;ATPase, AAA type, core [more]
ATCG01280.11.8e-1687.23Chloroplast Ycf2;ATPase, AAA type, core [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.1370.30coord: 103..175
e-value: 1.2E-23
score: 84.7
NoneNo IPR availableGENE3D3.30.1490.10coord: 176..233
e-value: 1.2E-28
score: 100.3
NoneNo IPR availablePANTHERPTHR11758:SF437S RIBOSOMAL PROTEIN S8, MITOCHONDRIALcoord: 104..232
IPR000630Ribosomal protein S8PFAMPF00410Ribosomal_S8coord: 105..233
e-value: 1.1E-38
score: 132.0
IPR000630Ribosomal protein S8PANTHERPTHR1175840S RIBOSOMAL PROTEIN S15Acoord: 104..232
IPR000630Ribosomal protein S8PROSITEPS00053RIBOSOMAL_S8coord: 203..220
IPR000630Ribosomal protein S8HAMAPMF_01302_BRibosomal_S8_Bcoord: 100..233
score: 27.814016
IPR035987Ribosomal protein S8 superfamilySUPERFAMILY56047Ribosomal protein S8coord: 105..233

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc11G08115.1Clc11G08115.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome