Clc11G08090 (gene) Watermelon (cordophanus) v2

Overview
NameClc11G08090
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUSP domain-containing protein
LocationClcChr11: 7845934 .. 7849454 (+)
RNA-Seq ExpressionClc11G08090
SyntenyClc11G08090
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGGTATAACGAACATACCTTGTCTCCACATTGGATCAAGAACAAGATCAAAGGGATCAAAAACTGCTAATTCGTATAGGGCCATTGAACCGGCCCAACCAGCAACTAGAGCTGTATGCATTATATGAACAGAAAGATTTTCGAATTGAGAGAGATCAAGAATTCTCACTATTTCTTAGATTCATGGACCCAATTCAATTCAGTGGGATCTTTCATTCACATTTTTTTCCATCAAGAACGTTTTATAAAACTCTTAGACTCCCGAATTTGGAGTATCCTACTTTCACGCAATTGCAGCTATAGTCAGAACTCCAACTGGTACAATCTAGTTTAAACCATGACCATCTATCTTTTTCTCTTTATATCTATATATATAGGGCTTTCACCGCCTCTGACGGAAAAAAGAGGACGTCGTTGGTTGGTTAGAACTGCGAGTTTTTTCAGAAAAGACTTGCTGCCCCCCTATCCGAATCCCGCGAGTGACTAAGCGCGAGACGAGCCATAACATCAGGGGCGAATCGACTACAACTCATCTATAAAGAATCGACCAACGATATCTTCTTTTTTCGGTCTATTTGCATCAGGCGGCCAGAGTTCTTTTCAATTTGAAAACTCAAGATATTACCAGATTTGGAAGCTAACTCCTCATCTTCACCTTACGAACTTTCTGTTCAATCTTCTTGAAAGAAGTTTTTCATTCACAGGAGGGCTTCGAATAAATCATATACTAATTCTCTTTCTCTGAAAATATAGAAGAAAGGAGTCTGTGCCCCAATATCCGCCATAAAAGGGCCAAGCCATAACAGATGAGAAGCTATACGACTCAACTCCAACATAATTACTCTGATATAGCTGGCTCTTTTAGGTACTTGAATATTTCCCAACTGTTCTGGACCATTTACGGTTATTGCTTCTGTAAACATAGTAGCTAAATAATCCCAACGTGTTACATAAGGTAGATATTGTATAATTGTTCGGTTTTCTGCAATTTTTTCCATCCCTCTGTGTAAATAACCCAATATTGGTTCACAGTCAATAACATCTTCACCATCCAAAGTAAGGATGAGTCGAAGAACACCGTGCATTGATGGGTGGTGAGGTCCCATATTCACTATCATGAGGCCATAAATTTGATACACAATAAAAAGATACGATAAATATTTTTGATTTATTTTTAGGTAGTGAACGGAGTTCTTCCATTCATTCTATCCTATTCACTGGTACTTATCACTGATACGGGAAAAACAATCTTTTTTTATTGCATGTATTATTCTCATCTCATTATGCGCATCACATAAAGGGGGAGCCGTATGAGATGAAAATCTCACGTACGATTCTGGAACGAAGATTCTTTGAATGGAATAACGAACGACCGTAACGGATGTCGGCTCAATCCGAAGGAAATTATGCGGAAGCACGAAAGGCGAACTCCGCCACTTTTTAGGAGTTGGTTTTGGCTTGCCTCTTTCTATGTTATTAGTAAAGTGCTAACGAGCAAGAAAACGGATGCACTAACGCCTGGACTTTCAATATGGAAATGCAAATGAAAGAGGAAAGGCGTATTATCGTCGACGGCCTTTCGCGCTGGACCGCTACTACAAATAGTACTACACCCTTGATCGTGAAATATCGATTGCTTGTTGAACCCTGTGAATTGCGTGAAAGTAGGATACTCCAAATTCGGGAGTCTAAGAGTTTTATAAAACGTTCTTGATGGAAAAAAATGTGAATGAAAGATCCCACTGAATTGAATTGGGGAAAATCAAAATTATGTAATGAAATATTGTAATATTTTCATTTCATTTAAATAGACAAACATTCAAATAACATAGTAAAAAAAAAAAAAGAAAAGAGTAAATAACTAAAAAACCTAAAATAAAAATAACCAAAAATCAGAAAAATAATAAGAATTTCAAATGTCATTTGCTTAGTGCAACATGGCAAATTTCATTGAGAGGAATCAGTAAAGAAAAGAAAAACGAACATCTTACAACACAACATTAATTTCTTATAATTTAATCCATAACAATTTTCGCATTGAACCCACAAATGCCTGTATTTTTGAGTTACATCTAGATCATTAGAACTTTCTGTTCTAGTTAAATCACTTCCATCCGTGCTAGTTCTTATATTGGAACTCTCACTTTCACTACTATTTCCACCTTCACCACTTTTTTATAATTGAATGAAATTATACGGTTTTTACTTTTTTTATTACAAAAAAACAAAACAATATGTTGTCTATTCTCCCTTCAATCAAATATGAATACTACGGCTCGAGTTTTATGAAAAAAGCCAAAGCCCCTTATCGGATTTGAACCGATGACTTACGCCTTACCATGGCGGATGAAAACGTGAATTCCCAACCATTTATGCGTTGGAGAGACCGTTTCCTATTTTGTGCGGAAGCTATTTATAAATCACAGGCTGAAACAGGTGAAATCAAGGGACATTACTTGAATGCTACTGCAGGTACATGCGAAGAAATGATGAAAAGGGCTGTATTTGCCCGAAGGATTGTTCATGGAACTACTATCGAGATTCTTCGGACCATATTTCCTAGTCCTTTGGTTATCCCAACAATGGGGGATAACAACCGCTTATGCGGCCCTTCTTCCTTCCCTTTCTTAGTCCAATCTCGAATGGAACTTTTTTTTAGGATTTCTACTTATATATAGGGTAGGGGGCGGATGTAGCCAAGTGGATCAAGGCAGTGGATTGTGAATCCACCATGCGCGGGTTCAATTCCCGTCGTTCGCCCATAATATATAGTTACAGAATATATAACTGATAAGATAAATACAGTGAATTTACCTCCTATTTTTTTTGTTTGTAAAGACGAAGAAACAAATTCGATTTTCTCTCTTATTTACTACGGCGACGAAGAATCAAATTATCACTATATTTGAGACTTTCTATACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAATGGAACTTTAGCTTTAGCTGGTCGTTTTATTGACTGTATACTTAACTACCAATTCAATTCTAGTATAAAAGCTTCAAACTTCTATTATGAACCAGGCTACCTCTGACTCTACATCGATAGGTAGCGAATCCGCTGCTTCGGTCTAGTCCGTCGGAGTAGAGGAATTGGTCGACTTAGCGATCAAAGAATGTGAAGAAGAAATCATGTAACGAAGGGGGTTCTTATTTGTACAAATGGTACTTCGAACTTGGAACGAGCATGAAGAAATTAACGATACTTCTTTATCTTTTGAGTTGTTCTGCCGGATCGGTCGTTCAAGACCTTTGGTCTCTACCCGGACCCAGGCGATGCGGGAATAGCTTCTAACGTTCCTGTTGGAGATGCAAGTATTGTCGTAGCTGCTGTCGAGGATGTTGGAGATGCGAGCACTTTTGCCGAAGCAGGAACGGTTGGCGCTGATCTTGTCGAGGCGAGAAAGGACTGA

mRNA sequence

ATGAAGGGTATAACGAACATACCTTGTCTCCACATTGGATCAAGAACAAGATCAAAGGGATCAAAAACTGCTAATTCGTATAGGGCCATTGAACCGGCCCAACCAGCAACTAGAGCTACCTTTGGTCTCTACCCGGACCCAGGCGATGCGGGAATAGCTTCTAACGTTCCTGTTGGAGATGCAAGTATTGTCGTAGCTGCTGTCGAGGATGTTGGAGATGCGAGCACTTTTGCCGAAGCAGGAACGGTTGGCGCTGATCTTGTCGAGGCGAGAAAGGACTGA

Coding sequence (CDS)

ATGAAGGGTATAACGAACATACCTTGTCTCCACATTGGATCAAGAACAAGATCAAAGGGATCAAAAACTGCTAATTCGTATAGGGCCATTGAACCGGCCCAACCAGCAACTAGAGCTACCTTTGGTCTCTACCCGGACCCAGGCGATGCGGGAATAGCTTCTAACGTTCCTGTTGGAGATGCAAGTATTGTCGTAGCTGCTGTCGAGGATGTTGGAGATGCGAGCACTTTTGCCGAAGCAGGAACGGTTGGCGCTGATCTTGTCGAGGCGAGAAAGGACTGA

Protein sequence

MKGITNIPCLHIGSRTRSKGSKTANSYRAIEPAQPATRATFGLYPDPGDAGIASNVPVGDASIVVAAVEDVGDASTFAEAGTVGADLVEARKD
Homology
[Close]
BLAST of Clc11G08090 vs. NCBI nr
Match: KAF4387291.1 (hypothetical protein F8388_016700 [Cannabis sativa])

HSP 1 Score: 77.4 bits (189), Expect = 7.2e-11
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 0 

Query: 1  MKGITNIPCLHIGSRTRSKGSKTANSYRAIEPAQPATRA 40
          MKGITNIPCLHIGSRT S+GSKTANSYRAIEPAQPATRA
Sbjct: 1  MKGITNIPCLHIGSRTGSEGSKTANSYRAIEPAQPATRA 39

[Close]
BLAST of Clc11G08090 vs. NCBI nr
Match: DAD35503.1 (TPA_asm: hypothetical protein HUJ06_006143 [Nelumbo nucifera])

HSP 1 Score: 75.1 bits (183), Expect = 3.6e-10
Identity = 37/51 (72.55%), Postives = 41/51 (80.39%), Query Frame = 0 

Query: 1  MKGITNIPCLHIGSRTRSKGSKTANSYRAIEPAQPATRATFGLYPDPGDAG 52
          MKGITNIPCLHIGSRT S+GSKTANSYRAIEPAQP TRA   ++ +    G
Sbjct: 1  MKGITNIPCLHIGSRTGSEGSKTANSYRAIEPAQPETRAVCIIWTESNRPG 51

[Close]
BLAST of Clc11G08090 vs. NCBI nr
Match: PRQ20497.1 (hypothetical protein RchiOBHm_Chr7g0228831 [Rosa chinensis])

HSP 1 Score: 74.3 bits (181), Expect = 6.1e-10
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 1  MKGITNIPCLHIGSRTRSKGSKTANSYRAIEPAQPATR 39
          MKGITNIPCLHIGSRT S+GSKTANSYRAI+PAQPATR
Sbjct: 1  MKGITNIPCLHIGSRTGSEGSKTANSYRAIKPAQPATR 38

[Close]
BLAST of Clc11G08090 vs. NCBI nr
Match: YP_358607.1 (hypothetical protein PhapfoPp060 [Phalaenopsis aphrodite subsp. formosana] >AAW82562.1 hypothetical protein [Phalaenopsis aphrodite subsp. formosana])

HSP 1 Score: 73.9 bits (180), Expect = 8.0e-10
Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = 0 

Query: 1  MKGITNIPCLHIGSRTRSKGSKTANSYRAIEPAQPATRATFGLYPDPGDAG 52
          MKGITN+PCLHIGSRT S+GSKTANSYRAIEPAQP TRA   ++ +    G
Sbjct: 25 MKGITNMPCLHIGSRTGSEGSKTANSYRAIEPAQPETRAVCIIWTESNRPG 75

[Close]
BLAST of Clc11G08090 vs. NCBI nr
Match: KAG0537795.1 (hypothetical protein BDA96_03G178900 [Sorghum bicolor] >KAG0537826.1 hypothetical protein BDA96_03G182000 [Sorghum bicolor] >KAG0537836.1 hypothetical protein BDA96_03G183000 [Sorghum bicolor])

HSP 1 Score: 73.2 bits (178), Expect = 1.4e-09
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 1  MKGITNIPCLHIGSRTRSKGSKTANSYRAIEPAQPATRA 40
          MKG+TNIPCLHIGSRT S+GSKTANSY+AIEPAQP TRA
Sbjct: 1  MKGMTNIPCLHIGSRTGSEGSKTANSYKAIEPAQPETRA 39

[Close]
BLAST of Clc11G08090 vs. ExPASy TrEMBL
Match: A0A7J6GWY3 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_016700 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.5e-11
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 0 

Query: 1  MKGITNIPCLHIGSRTRSKGSKTANSYRAIEPAQPATRA 40
          MKGITNIPCLHIGSRT S+GSKTANSYRAIEPAQPATRA
Sbjct: 1  MKGITNIPCLHIGSRTGSEGSKTANSYRAIEPAQPATRA 39

[Close]
BLAST of Clc11G08090 vs. ExPASy TrEMBL
Match: A0A251UVW0 (Uncharacterized protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr04g0095091 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 7.8e-11
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 0 

Query: 1  MKGITNIPCLHIGSRTRSKGSKTANSYRAIEPAQPATRA 40
          MKGITNIPCLHIGSRT S+GSKTANSYRAIEPAQPAT+A
Sbjct: 35 MKGITNIPCLHIGSRTGSEGSKTANSYRAIEPAQPATKA 73

[Close]
BLAST of Clc11G08090 vs. ExPASy TrEMBL
Match: A0A453JFF5 (Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.9e-10
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 1  MKGITNIPCLHIGSRTRSKGSKTANSYRAIEPAQPATRA 40
          MKGITNIPCLHIGSRT S+GSKTANSY+AIEPAQP TRA
Sbjct: 1  MKGITNIPCLHIGSRTGSEGSKTANSYKAIEPAQPETRA 39

[Close]
BLAST of Clc11G08090 vs. ExPASy TrEMBL
Match: A0A453KSM4 (Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.9e-10
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 1  MKGITNIPCLHIGSRTRSKGSKTANSYRAIEPAQPATRA 40
          MKGITNIPCLHIGSRT S+GSKTANSY+AIEPAQP TRA
Sbjct: 1  MKGITNIPCLHIGSRTGSEGSKTANSYKAIEPAQPETRA 39

[Close]
BLAST of Clc11G08090 vs. ExPASy TrEMBL
Match: A0A2P6PEZ3 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0228831 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.9e-10
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 1  MKGITNIPCLHIGSRTRSKGSKTANSYRAIEPAQPATR 39
          MKGITNIPCLHIGSRT S+GSKTANSYRAI+PAQPATR
Sbjct: 1  MKGITNIPCLHIGSRTGSEGSKTANSYRAIKPAQPATR 38

The following BLAST results are available for this feature:
BLAST of Clc11G08090 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF4387291.17.2e-1194.87hypothetical protein F8388_016700 [Cannabis sativa][more]
DAD35503.13.6e-1072.55TPA_asm: hypothetical protein HUJ06_006143 [Nelumbo nucifera][more]
PRQ20497.16.1e-1092.11hypothetical protein RchiOBHm_Chr7g0228831 [Rosa chinensis][more]
YP_358607.18.0e-1070.59hypothetical protein PhapfoPp060 [Phalaenopsis aphrodite subsp. formosana] >AAW8... [more]
KAG0537795.11.4e-0987.18hypothetical protein BDA96_03G178900 [Sorghum bicolor] >KAG0537826.1 hypothetica... [more]
BLAST of Clc11G08090 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc11G08090 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7J6GWY33.5e-1194.87Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_016700 PE=4 SV=1[more]
A0A251UVW07.8e-1192.31Uncharacterized protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr04g0095091 PE... [more]
A0A453JFF52.9e-1089.74Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 S... [more]
A0A453KSM42.9e-1089.74Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 S... [more]
A0A2P6PEZ32.9e-1092.11Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0228831 PE=4... [more]
BLAST of Clc11G08090 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc11G08090.2Clc11G08090.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016579 protein deubiquitination
cellular_component GO:0009507 chloroplast
cellular_component GO:0022627 cytosolic small ribosomal subunit
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0004843 thiol-dependent deubiquitinase