Clc11G08070 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G08070
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Protein Ycf2
Location	ClcChr11: 7844178 .. 7845186 (+)
RNA-Seq Expression	Clc11G08070
Synteny	Clc11G08070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAACAATTAGGAGATTCTCTAGAAGAAATATGGGGTTCTGCTTCTGGTGGCAACATGCTATGGGGTGGCGGTCCCGCTTATGGGGTCAAATCAATACGTTCGAAGAAGAAAGATTGGAATATCAATCTCATCGATCTCATAAGTATCATACCAAATCCCATCAATCGAATCGCTTTTTCGAGAAATACGAGACATCTAAGTCATACAAGTAAAGAGATATATTCATTGATAAGAAAAAGAAAAAATGTGAACAGTGATTGGATTGATGATAAAATCGAATCCTGGGTCTCGAACAGTGATTCGATTGATGATAAAGAAAGAGAATTCTTGGTTCAGTTCTCCACCTTAACGACAGAAAAAAGGATTGATCAAATTCTATTGAGTCTGACTCATAGTGATCATTTATCAAAGAATGACTCTGGTTATCAAATGATTGAACAACCGGGAGTAATTTACTTACGATACTTAGTTGACATTCATAAAAAGTATCTAATGAATTATGAGTTCAATACATCCTGTTTAGCAGAAAGACGGACATTCCTTGCTCATTATCAGACAATCACTTATTCACAAACCTCGTGTGGGGCTAATAGTTTTCATTTCCCATCTCATGGAAAACCCTCTTTACCGATTAACCAATTTCTAAATGCTGGAGTAGATCCTAAAGAGATTCCACTTCCTCATGAATTTATCTTGAATCGGGATCTTTTGGCGCAACTTTATCCTAGTTTTGCTGAGGGAGCAACCCCATTTTTCACTTTGAATTGGTCAAAATATGCGGAATTTCTTACTTTTCGTGGAGGATTAGATCCAGTAACTGGGGGTCTATGGTTAACCGATATTGCACACCATCATTTAGCTATTGCAATTCTTTTCCTGATAGCGGGTCACATGTATAGGACCAACTGGGGCATTGGTCATGGTATAAAAGATATTTTAGAGGCTCATAAAGGTCCATTTACAGGCCAGGGCCATAAAGGACTATATGAGATCCTAACAACGTCATGA

mRNA sequence

GGAACAATTAGGAGATTCTCTAGAAGAAATATGGGGTTCTGCTTCTGGTGGCAACATGCTATGGGGTGGCGGTCCCGCTTATGGGGTCAAATCAATACGTTCGAAGAAGAAAGATTGGAATATCAATCTCATCGATCTCATAAGTATCATACCAAATCCCATCAATCGAATCGCTTTTTCGAGAAATACGAGACATCTAAGTCATACAAGTAAAGAGATATATTCATTGATAAGAAAAAGAAAAAATGTGAACAGTGATTGGATTGATGATAAAATCGAATCCTGGGTCTCGAACAGTGATTCGATTGATGATAAAGAAAGAGAATTCTTGGTTCAGTTCTCCACCTTAACGACAGAAAAAAGGATTGATCAAATTCTATTGAGTCTGACTCATAGTGATCATTTATCAAAGAATGACTCTGGTTATCAAATGATTGAACAACCGGGAGTAATTTACTTACGATACTTAGTTGACATTCATAAAAAGTATCTAATGAATTATGAGTTCAATACATCCTGTTTAGCAGAAAGACGGACATTCCTTGCTCATTATCAGACAATCACTTATTCACAAACCTCGTGTGGGGCTAATAGTTTTCATTTCCCATCTCATGGAAAACCCTCTTTACCGATTAACCAATTTCTAAATGCTGGAGTAGATCCTAAAGAGATTCCACTTCCTCATGAATTTATCTTGAATCGGGATCTTTTGGCGCAACTTTATCCTAGTTTTGCTGAGGGAGCAACCCCATTTTTCACTTTGAATTGGTCAAAATATGCGGAATTTCTTACTTTTCGTGGAGGATTAGATCCAGTAACTGGGGGTCTATGGTTAACCGATATTGCACACCATCATTTAGCTATTGCAATTCTTTTCCTGATAGCGGGTCACATGTATAGGACCAACTGGGGCATTGGTCATGGTATAAAAGATATTTTAGAGGCTCATAAAGGTCCATTTACAGGCCAGGGCCATAAAGGACTATATGAGATCCTAACAACGTCATGA

Coding sequence (CDS)

ATGCTATGGGGTGGCGGTCCCGCTTATGGGGTCAAATCAATACGTTCGAAGAAGAAAGATTGGAATATCAATCTCATCGATCTCATAAGTATCATACCAAATCCCATCAATCGAATCGCTTTTTCGAGAAATACGAGACATCTAAGTCATACAAGTAAAGAGATATATTCATTGATAAGAAAAAGAAAAAATGTGAACAGTGATTGGATTGATGATAAAATCGAATCCTGGGTCTCGAACAGTGATTCGATTGATGATAAAGAAAGAGAATTCTTGGTTCAGTTCTCCACCTTAACGACAGAAAAAAGGATTGATCAAATTCTATTGAGTCTGACTCATAGTGATCATTTATCAAAGAATGACTCTGGTTATCAAATGATTGAACAACCGGGAGTAATTTACTTACGATACTTAGTTGACATTCATAAAAAGTATCTAATGAATTATGAGTTCAATACATCCTGTTTAGCAGAAAGACGGACATTCCTTGCTCATTATCAGACAATCACTTATTCACAAACCTCGTGTGGGGCTAATAGTTTTCATTTCCCATCTCATGGAAAACCCTCTTTACCGATTAACCAATTTCTAAATGCTGGAGTAGATCCTAAAGAGATTCCACTTCCTCATGAATTTATCTTGAATCGGGATCTTTTGGCGCAACTTTATCCTAGTTTTGCTGAGGGAGCAACCCCATTTTTCACTTTGAATTGGTCAAAATATGCGGAATTTCTTACTTTTCGTGGAGGATTAGATCCAGTAACTGGGGGTCTATGGTTAACCGATATTGCACACCATCATTTAGCTATTGCAATTCTTTTCCTGATAGCGGGTCACATGTATAGGACCAACTGGGGCATTGGTCATGGTATAAAAGATATTTTAGAGGCTCATAAAGGTCCATTTACAGGCCAGGGCCATAAAGGACTATATGAGATCCTAACAACGTCATGA

Protein sequence

MLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTSKEIYSLIRKRKNVNSDWIDDKIESWVSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGVIYLRYLVDIHKKYLMNYEFNTSCLAERRTFLAHYQTITYSQTSCGANSFHFPSHGKPSLPINQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGATPFFTLNWSKYAEFLTFRGGLDPVTGGLWLTDIAHHHLAIAILFLIAGHMYRTNWGIGHGIKDILEAHKGPFTGQGHKGLYEILTTS

Homology

[Close]

BLAST of Clc11G08070 vs. NCBI nr
Match: YP_009752370.1 (Ycf2 protein [Bryonia marmorata] >YP_009752388.1 Ycf2 protein [Bryonia marmorata] >QIT04344.1 Ycf2 protein [Bryonia marmorata] >QIT04362.1 Ycf2 protein [Bryonia marmorata])

HSP 1 Score: 384.8 bits (987), Expect = 7.2e-103
Identity = 188/189 (99.47%), Postives = 188/189 (99.47%), Query Frame = 0


Query: 1    MLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTSKEIYSLIR 60
            MLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTSKEIYSLIR
Sbjct: 1430 MLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTSKEIYSLIR 1489

Query: 61   KRKNVNSDWIDDKIESWVSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKN 120
            KRKNVN DWIDDKIESWVSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKN
Sbjct: 1490 KRKNVNGDWIDDKIESWVSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKN 1549

Query: 121  DSGYQMIEQPGVIYLRYLVDIHKKYLMNYEFNTSCLAERRTFLAHYQTITYSQTSCGANS 180
            DSGYQMIEQPGVIYLRYLVDIHKKYLMNYEFNTSCLAERRTFLAHYQTITYSQTSCGANS
Sbjct: 1550 DSGYQMIEQPGVIYLRYLVDIHKKYLMNYEFNTSCLAERRTFLAHYQTITYSQTSCGANS 1609

Query: 181  FHFPSHGKP 190
            FHFPSHGKP
Sbjct: 1610 FHFPSHGKP 1618

[Close]

BLAST of Clc11G08070 vs. NCBI nr
Match: QJR53001.1 (hypothetical protein RF2 [Herpetospermum pedunculosum] >QJR53017.1 hypothetical protein RF2 [Herpetospermum pedunculosum])

HSP 1 Score: 384.8 bits (987), Expect = 7.2e-103
Identity = 188/189 (99.47%), Postives = 188/189 (99.47%), Query Frame = 0


Query: 1    MLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTSKEIYSLIR 60
            MLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTSKEIYSLIR
Sbjct: 1432 MLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTSKEIYSLIR 1491

Query: 61   KRKNVNSDWIDDKIESWVSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKN 120
            KRKNVN DWIDDKIESWVSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKN
Sbjct: 1492 KRKNVNGDWIDDKIESWVSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKN 1551

Query: 121  DSGYQMIEQPGVIYLRYLVDIHKKYLMNYEFNTSCLAERRTFLAHYQTITYSQTSCGANS 180
            DSGYQMIEQPGVIYLRYLVDIHKKYLMNYEFNTSCLAERRTFLAHYQTITYSQTSCGANS
Sbjct: 1552 DSGYQMIEQPGVIYLRYLVDIHKKYLMNYEFNTSCLAERRTFLAHYQTITYSQTSCGANS 1611

Query: 181  FHFPSHGKP 190
            FHFPSHGKP
Sbjct: 1612 FHFPSHGKP 1620

[Close]

BLAST of Clc11G08070 vs. NCBI nr
Match: YP_009420838.1 (Ycf2 [Citrullus colocynthis] >YP_009420857.1 Ycf2 [Citrullus colocynthis] >YP_009431686.1 Ycf2 [Citrullus rehmii] >YP_009431705.1 Ycf2 [Citrullus rehmii] >ASP44531.1 Ycf2 [Citrullus colocynthis] >ASP44534.1 Ycf2 [Citrullus colocynthis] >ASY96311.1 Ycf2 [Citrullus rehmii] >ASY96314.1 Ycf2 [Citrullus rehmii])

HSP 1 Score: 384.8 bits (987), Expect = 7.2e-103
Identity = 188/189 (99.47%), Postives = 188/189 (99.47%), Query Frame = 0


Query: 1    MLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTSKEIYSLIR 60
            MLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTSKEIYSLIR
Sbjct: 1428 MLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTSKEIYSLIR 1487

Query: 61   KRKNVNSDWIDDKIESWVSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKN 120
            KRKNVN DWIDDKIESWVSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKN
Sbjct: 1488 KRKNVNGDWIDDKIESWVSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKN 1547

Query: 121  DSGYQMIEQPGVIYLRYLVDIHKKYLMNYEFNTSCLAERRTFLAHYQTITYSQTSCGANS 180
            DSGYQMIEQPGVIYLRYLVDIHKKYLMNYEFNTSCLAERRTFLAHYQTITYSQTSCGANS
Sbjct: 1548 DSGYQMIEQPGVIYLRYLVDIHKKYLMNYEFNTSCLAERRTFLAHYQTITYSQTSCGANS 1607

Query: 181  FHFPSHGKP 190
            FHFPSHGKP
Sbjct: 1608 FHFPSHGKP 1616

[Close]

BLAST of Clc11G08070 vs. NCBI nr
Match: QZL38725.1 (Ycf2 protein [Citrullus ecirrhosus] >QZL38746.1 Ycf2 protein [Citrullus ecirrhosus])

HSP 1 Score: 384.8 bits (987), Expect = 7.2e-103
Identity = 188/189 (99.47%), Postives = 188/189 (99.47%), Query Frame = 0


Query: 1    MLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTSKEIYSLIR 60
            MLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTSKEIYSLIR
Sbjct: 1428 MLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTSKEIYSLIR 1487

Query: 61   KRKNVNSDWIDDKIESWVSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKN 120
            KRKNVN DWIDDKIESWVSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKN
Sbjct: 1488 KRKNVNGDWIDDKIESWVSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKN 1547

Query: 121  DSGYQMIEQPGVIYLRYLVDIHKKYLMNYEFNTSCLAERRTFLAHYQTITYSQTSCGANS 180
            DSGYQMIEQPGVIYLRYLVDIHKKYLMNYEFNTSCLAERRTFLAHYQTITYSQTSCGANS
Sbjct: 1548 DSGYQMIEQPGVIYLRYLVDIHKKYLMNYEFNTSCLAERRTFLAHYQTITYSQTSCGANS 1607

Query: 181  FHFPSHGKP 190
            FHFPSHGKP
Sbjct: 1608 FHFPSHGKP 1616

[Close]

BLAST of Clc11G08070 vs. NCBI nr
Match: YP_009752726.1 (Ycf2 protein [Ampelosycios humblotii] >QIT05207.1 Ycf2 protein [Ampelosycios humblotii])

HSP 1 Score: 384.8 bits (987), Expect = 7.2e-103
Identity = 188/189 (99.47%), Postives = 188/189 (99.47%), Query Frame = 0


Query: 1    MLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTSKEIYSLIR 60
            MLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTSKEIYSLIR
Sbjct: 1431 MLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTSKEIYSLIR 1490

Query: 61   KRKNVNSDWIDDKIESWVSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKN 120
            KRKNVN DWIDDKIESWVSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKN
Sbjct: 1491 KRKNVNGDWIDDKIESWVSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKN 1550

Query: 121  DSGYQMIEQPGVIYLRYLVDIHKKYLMNYEFNTSCLAERRTFLAHYQTITYSQTSCGANS 180
            DSGYQMIEQPGVIYLRYLVDIHKKYLMNYEFNTSCLAERRTFLAHYQTITYSQTSCGANS
Sbjct: 1551 DSGYQMIEQPGVIYLRYLVDIHKKYLMNYEFNTSCLAERRTFLAHYQTITYSQTSCGANS 1610

Query: 181  FHFPSHGKP 190
            FHFPSHGKP
Sbjct: 1611 FHFPSHGKP 1619

[Close]

BLAST of Clc11G08070 vs. ExPASy Swiss-Prot
Match: A4GYV4 (Protein Ycf2 OS=Populus trichocarpa OX=3694 GN=ycf2-1 PE=3 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 3.8e-99
Identity = 179/189 (94.71%), Postives = 182/189 (96.30%), Query Frame = 0


Query: 1    MLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTSKEIYSLIR 60
            MLWGGGPAYGVKSIRSKKK +NINLIDLISIIPNPINRI FSRNTRHLSHTSKEIYSLIR
Sbjct: 1433 MLWGGGPAYGVKSIRSKKKFFNINLIDLISIIPNPINRITFSRNTRHLSHTSKEIYSLIR 1492

Query: 61   KRKNVNSDWIDDKIESWVSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKN 120
            KRKNVN DWIDDKIES V+NSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKN
Sbjct: 1493 KRKNVNGDWIDDKIESLVANSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKN 1552

Query: 121  DSGYQMIEQPGVIYLRYLVDIHKKYLMNYEFNTSCLAERRTFLAHYQTITYSQTSCGANS 180
            DSGYQMIE+PG IYLRYLVDIHKKYLMNYEFNT CLAERR FLAHYQTITYSQTSCGANS
Sbjct: 1553 DSGYQMIEEPGAIYLRYLVDIHKKYLMNYEFNTPCLAERRIFLAHYQTITYSQTSCGANS 1612

Query: 181  FHFPSHGKP 190
            FHFPSHGKP
Sbjct: 1613 FHFPSHGKP 1621

[Close]

BLAST of Clc11G08070 vs. ExPASy Swiss-Prot
Match: Q14F97 (Protein Ycf2 OS=Populus alba OX=43335 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 8.5e-99
Identity = 179/189 (94.71%), Postives = 181/189 (95.77%), Query Frame = 0


Query: 1    MLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTSKEIYSLIR 60
            MLWGGGPAYGVKSIRSKKK  NINLIDLISIIPNPINRI FSRNTRHLSHTSKEIYSLIR
Sbjct: 1430 MLWGGGPAYGVKSIRSKKKFLNINLIDLISIIPNPINRITFSRNTRHLSHTSKEIYSLIR 1489

Query: 61   KRKNVNSDWIDDKIESWVSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKN 120
            KRKNVN DWIDDKIES V+NSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKN
Sbjct: 1490 KRKNVNGDWIDDKIESLVANSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKN 1549

Query: 121  DSGYQMIEQPGVIYLRYLVDIHKKYLMNYEFNTSCLAERRTFLAHYQTITYSQTSCGANS 180
            DSGYQMIE+PG IYLRYLVDIHKKYLMNYEFNT CLAERR FLAHYQTITYSQTSCGANS
Sbjct: 1550 DSGYQMIEEPGAIYLRYLVDIHKKYLMNYEFNTPCLAERRIFLAHYQTITYSQTSCGANS 1609

Query: 181  FHFPSHGKP 190
            FHFPSHGKP
Sbjct: 1610 FHFPSHGKP 1618

[Close]

BLAST of Clc11G08070 vs. ExPASy Swiss-Prot
Match: A4QKE8 (Protein Ycf2 OS=Barbarea verna OX=50458 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 3.2e-98
Identity = 176/189 (93.12%), Postives = 179/189 (94.71%), Query Frame = 0


Query: 1    MLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTSKEIYSLIR 60
            MLWGG PAYGVKSIRSKKKD  IN ID+ISIIPNPINRI FSRNTRHLSHTSKEIYSLIR
Sbjct: 1439 MLWGGDPAYGVKSIRSKKKDLKINFIDIISIIPNPINRITFSRNTRHLSHTSKEIYSLIR 1498

Query: 61   KRKNVNSDWIDDKIESWVSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKN 120
            KRKNV+ DWIDDKIESWV+NSDSIDDKEREFLVQFSTL  EKRIDQILLSLTHSDHLSKN
Sbjct: 1499 KRKNVSGDWIDDKIESWVANSDSIDDKEREFLVQFSTLRAEKRIDQILLSLTHSDHLSKN 1558

Query: 121  DSGYQMIEQPGVIYLRYLVDIHKKYLMNYEFNTSCLAERRTFLAHYQTITYSQTSCGANS 180
            DSGYQMIEQPG IYLRYLVDIHKKYLMNYEFNTSCLAERR FLAHYQTITYSQTSCGANS
Sbjct: 1559 DSGYQMIEQPGTIYLRYLVDIHKKYLMNYEFNTSCLAERRIFLAHYQTITYSQTSCGANS 1618

Query: 181  FHFPSHGKP 190
            FHFPSHGKP
Sbjct: 1619 FHFPSHGKP 1627

[Close]

BLAST of Clc11G08070 vs. ExPASy Swiss-Prot
Match: A4QJF8 (Protein Ycf2 OS=Aethionema cordifolium OX=434059 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 9.4e-98
Identity = 178/192 (92.71%), Postives = 181/192 (94.27%), Query Frame = 0


Query: 1    MLWGGGPAYGVKSIRSKKKDWNIN---LIDLISIIPNPINRIAFSRNTRHLSHTSKEIYS 60
            MLWGG PAYGVKSIRSKKKD NIN   +IDLISIIPNPINRI FSRNTRHLSHTSKEIYS
Sbjct: 1444 MLWGGDPAYGVKSIRSKKKDLNINFIDIIDLISIIPNPINRITFSRNTRHLSHTSKEIYS 1503

Query: 61   LIRKRKNVNSDWIDDKIESWVSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHL 120
            LIRKRKNV+ DWIDDKIESWV+NSDSIDDKEREFLVQFSTL  EKRIDQILLSLTHSDHL
Sbjct: 1504 LIRKRKNVSGDWIDDKIESWVANSDSIDDKEREFLVQFSTLRAEKRIDQILLSLTHSDHL 1563

Query: 121  SKNDSGYQMIEQPGVIYLRYLVDIHKKYLMNYEFNTSCLAERRTFLAHYQTITYSQTSCG 180
            SKNDSGYQMIEQPG IYLRYLVDIHKKYLMNYEFNTSCLAERR FLAHYQTITYSQTSCG
Sbjct: 1564 SKNDSGYQMIEQPGTIYLRYLVDIHKKYLMNYEFNTSCLAERRIFLAHYQTITYSQTSCG 1623

Query: 181  ANSFHFPSHGKP 190
            ANSFHFPSHGKP
Sbjct: 1624 ANSFHFPSHGKP 1635

[Close]

BLAST of Clc11G08070 vs. ExPASy Swiss-Prot
Match: B1NWJ3 (Protein Ycf2 OS=Manihot esculenta OX=3983 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 9.4e-98
Identity = 176/189 (93.12%), Postives = 179/189 (94.71%), Query Frame = 0


Query: 1    MLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTSKEIYSLIR 60
            MLWGGGPAYGVKSIRSKKK WNINLIDLISIIPNPINRI FSRNTRHLSHTSKEIYSLIR
Sbjct: 1425 MLWGGGPAYGVKSIRSKKKFWNINLIDLISIIPNPINRITFSRNTRHLSHTSKEIYSLIR 1484

Query: 61   KRKNVNSDWIDDKIESWVSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKN 120
            KRKNVN DWIDDKIES V+NSD IDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKN
Sbjct: 1485 KRKNVNGDWIDDKIESLVANSDWIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKN 1544

Query: 121  DSGYQMIEQPGVIYLRYLVDIHKKYLMNYEFNTSCLAERRTFLAHYQTITYSQTSCGANS 180
            DSGYQMIE+PG IYLRYLVDIHKKYLMNYEFNT CLAERR FLA+YQT TYSQTSCG NS
Sbjct: 1545 DSGYQMIEEPGAIYLRYLVDIHKKYLMNYEFNTPCLAERRIFLAYYQTTTYSQTSCGVNS 1604

Query: 181  FHFPSHGKP 190
            FHFPSHGKP
Sbjct: 1605 FHFPSHGKP 1613

[Close]

BLAST of Clc11G08070 vs. ExPASy TrEMBL
Match: A0A343F2F1 (Protein Ycf2 OS=Citrullus colocynthis OX=252529 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 3.5e-103
Identity = 188/189 (99.47%), Postives = 188/189 (99.47%), Query Frame = 0


Query: 1    MLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTSKEIYSLIR 60
            MLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTSKEIYSLIR
Sbjct: 1428 MLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTSKEIYSLIR 1487

Query: 61   KRKNVNSDWIDDKIESWVSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKN 120
            KRKNVN DWIDDKIESWVSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKN
Sbjct: 1488 KRKNVNGDWIDDKIESWVSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKN 1547

Query: 121  DSGYQMIEQPGVIYLRYLVDIHKKYLMNYEFNTSCLAERRTFLAHYQTITYSQTSCGANS 180
            DSGYQMIEQPGVIYLRYLVDIHKKYLMNYEFNTSCLAERRTFLAHYQTITYSQTSCGANS
Sbjct: 1548 DSGYQMIEQPGVIYLRYLVDIHKKYLMNYEFNTSCLAERRTFLAHYQTITYSQTSCGANS 1607

Query: 181  FHFPSHGKP 190
            FHFPSHGKP
Sbjct: 1608 FHFPSHGKP 1616

[Close]

BLAST of Clc11G08070 vs. ExPASy TrEMBL
Match: A0A7G9IT80 (Protein Ycf2 OS=Lagenaria siceraria var. microcarpa OX=2726058 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 3.5e-103
Identity = 188/189 (99.47%), Postives = 188/189 (99.47%), Query Frame = 0


Query: 1    MLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTSKEIYSLIR 60
            MLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTSKEIYSLIR
Sbjct: 1430 MLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTSKEIYSLIR 1489

Query: 61   KRKNVNSDWIDDKIESWVSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKN 120
            KRKNVN DWIDDKIESWVSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKN
Sbjct: 1490 KRKNVNGDWIDDKIESWVSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKN 1549

Query: 121  DSGYQMIEQPGVIYLRYLVDIHKKYLMNYEFNTSCLAERRTFLAHYQTITYSQTSCGANS 180
            DSGYQMIEQPGVIYLRYLVDIHKKYLMNYEFNTSCLAERRTFLAHYQTITYSQTSCGANS
Sbjct: 1550 DSGYQMIEQPGVIYLRYLVDIHKKYLMNYEFNTSCLAERRTFLAHYQTITYSQTSCGANS 1609

Query: 181  FHFPSHGKP 190
            FHFPSHGKP
Sbjct: 1610 FHFPSHGKP 1618

[Close]

BLAST of Clc11G08070 vs. ExPASy TrEMBL
Match: A0A6H0EWH7 (Protein Ycf2 OS=Gerrardanthus macrorhizus OX=386173 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 3.5e-103
Identity = 188/189 (99.47%), Postives = 188/189 (99.47%), Query Frame = 0


Query: 1    MLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTSKEIYSLIR 60
            MLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTSKEIYSLIR
Sbjct: 1423 MLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTSKEIYSLIR 1482

Query: 61   KRKNVNSDWIDDKIESWVSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKN 120
            KRKNVNSDWIDDKIESWVSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKN
Sbjct: 1483 KRKNVNSDWIDDKIESWVSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKN 1542

Query: 121  DSGYQMIEQPGVIYLRYLVDIHKKYLMNYEFNTSCLAERRTFLAHYQTITYSQTSCGANS 180
            DSGYQMIEQPG IYLRYLVDIHKKYLMNYEFNTSCLAERRTFLAHYQTITYSQTSCGANS
Sbjct: 1543 DSGYQMIEQPGAIYLRYLVDIHKKYLMNYEFNTSCLAERRTFLAHYQTITYSQTSCGANS 1602

Query: 181  FHFPSHGKP 190
            FHFPSHGKP
Sbjct: 1603 FHFPSHGKP 1611

[Close]

BLAST of Clc11G08070 vs. ExPASy TrEMBL
Match: A0A249RXF2 (Protein Ycf2 OS=Citrullus rehmii OX=260675 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 3.5e-103
Identity = 188/189 (99.47%), Postives = 188/189 (99.47%), Query Frame = 0


Query: 1    MLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTSKEIYSLIR 60
            MLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTSKEIYSLIR
Sbjct: 1428 MLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTSKEIYSLIR 1487

Query: 61   KRKNVNSDWIDDKIESWVSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKN 120
            KRKNVN DWIDDKIESWVSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKN
Sbjct: 1488 KRKNVNGDWIDDKIESWVSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKN 1547

Query: 121  DSGYQMIEQPGVIYLRYLVDIHKKYLMNYEFNTSCLAERRTFLAHYQTITYSQTSCGANS 180
            DSGYQMIEQPGVIYLRYLVDIHKKYLMNYEFNTSCLAERRTFLAHYQTITYSQTSCGANS
Sbjct: 1548 DSGYQMIEQPGVIYLRYLVDIHKKYLMNYEFNTSCLAERRTFLAHYQTITYSQTSCGANS 1607

Query: 181  FHFPSHGKP 190
            FHFPSHGKP
Sbjct: 1608 FHFPSHGKP 1616

[Close]

BLAST of Clc11G08070 vs. ExPASy TrEMBL
Match: A0A6C0U8W2 (Protein Ycf2 OS=Siraitia siamensis OX=2695833 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 3.5e-103
Identity = 188/189 (99.47%), Postives = 188/189 (99.47%), Query Frame = 0


Query: 1    MLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTSKEIYSLIR 60
            MLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTSKEIYSLIR
Sbjct: 1430 MLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTSKEIYSLIR 1489

Query: 61   KRKNVNSDWIDDKIESWVSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKN 120
            KRKNVN DWIDDKIESWVSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKN
Sbjct: 1490 KRKNVNGDWIDDKIESWVSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKN 1549

Query: 121  DSGYQMIEQPGVIYLRYLVDIHKKYLMNYEFNTSCLAERRTFLAHYQTITYSQTSCGANS 180
            DSGYQMIEQPGVIYLRYLVDIHKKYLMNYEFNTSCLAERRTFLAHYQTITYSQTSCGANS
Sbjct: 1550 DSGYQMIEQPGVIYLRYLVDIHKKYLMNYEFNTSCLAERRTFLAHYQTITYSQTSCGANS 1609

Query: 181  FHFPSHGKP 190
            FHFPSHGKP
Sbjct: 1610 FHFPSHGKP 1618

[Close]

BLAST of Clc11G08070 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 355.9 bits (912), Expect = 3.3e-98
Identity = 177/192 (92.19%), Postives = 180/192 (93.75%), Query Frame = 0


Query: 1    MLWGGGPAYGVKSIRSKKKDWNIN---LIDLISIIPNPINRIAFSRNTRHLSHTSKEIYS 60
            MLWGG PAYGVKSIRSKKKD  IN   +IDLISIIPNPINRI FSRNTRHLSHTSKEIYS
Sbjct: 1440 MLWGGDPAYGVKSIRSKKKDLKINFIDIIDLISIIPNPINRITFSRNTRHLSHTSKEIYS 1499

Query: 61   LIRKRKNVNSDWIDDKIESWVSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHL 120
            LIRKRKNV+ DWIDDKIESWV+NSDSIDDKEREFLVQFSTL  EKRIDQILLSLTHSDHL
Sbjct: 1500 LIRKRKNVSGDWIDDKIESWVANSDSIDDKEREFLVQFSTLRAEKRIDQILLSLTHSDHL 1559

Query: 121  SKNDSGYQMIEQPGVIYLRYLVDIHKKYLMNYEFNTSCLAERRTFLAHYQTITYSQTSCG 180
            SKNDSGYQMIEQPG IYLRYLVDIHKKYLMNYEFNTSCLAERR FLAHYQTITYSQTSCG
Sbjct: 1560 SKNDSGYQMIEQPGTIYLRYLVDIHKKYLMNYEFNTSCLAERRIFLAHYQTITYSQTSCG 1619

Query: 181  ANSFHFPSHGKP 190
            ANSFHFPSHGKP
Sbjct: 1620 ANSFHFPSHGKP 1631

[Close]

BLAST of Clc11G08070 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 355.9 bits (912), Expect = 3.3e-98
Identity = 177/192 (92.19%), Postives = 180/192 (93.75%), Query Frame = 0


Query: 1    MLWGGGPAYGVKSIRSKKKDWNIN---LIDLISIIPNPINRIAFSRNTRHLSHTSKEIYS 60
            MLWGG PAYGVKSIRSKKKD  IN   +IDLISIIPNPINRI FSRNTRHLSHTSKEIYS
Sbjct: 1440 MLWGGDPAYGVKSIRSKKKDLKINFIDIIDLISIIPNPINRITFSRNTRHLSHTSKEIYS 1499

Query: 61   LIRKRKNVNSDWIDDKIESWVSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHL 120
            LIRKRKNV+ DWIDDKIESWV+NSDSIDDKEREFLVQFSTL  EKRIDQILLSLTHSDHL
Sbjct: 1500 LIRKRKNVSGDWIDDKIESWVANSDSIDDKEREFLVQFSTLRAEKRIDQILLSLTHSDHL 1559

Query: 121  SKNDSGYQMIEQPGVIYLRYLVDIHKKYLMNYEFNTSCLAERRTFLAHYQTITYSQTSCG 180
            SKNDSGYQMIEQPG IYLRYLVDIHKKYLMNYEFNTSCLAERR FLAHYQTITYSQTSCG
Sbjct: 1560 SKNDSGYQMIEQPGTIYLRYLVDIHKKYLMNYEFNTSCLAERRIFLAHYQTITYSQTSCG 1619

Query: 181  ANSFHFPSHGKP 190
            ANSFHFPSHGKP
Sbjct: 1620 ANSFHFPSHGKP 1631

[Close]

BLAST of Clc11G08070 vs. TAIR 10
Match: ATCG00350.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 275.8 bits (704), Expect = 4.4e-74
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 190 SLPINQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGATPFFTLNWSKYAEFLTFRG 249
           SLPINQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGATPFFTLNWSKY+EFLTFRG
Sbjct: 218 SLPINQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGATPFFTLNWSKYSEFLTFRG 277

Query: 250 GLDPVTGGLWLTDIAHHHLAIAILFLIAGHMYRTNWGIGHGIKDILEAHKGPFTGQGHKG 309
           GLDPVTGGLWLTDIAHHHLAIAILFLIAGHMYRTNWGIGHGIKDILEAHKGPFTGQGHKG
Sbjct: 278 GLDPVTGGLWLTDIAHHHLAIAILFLIAGHMYRTNWGIGHGIKDILEAHKGPFTGQGHKG 337

Query: 310 LYEILTTS 318
           LYEILTTS
Sbjct: 338 LYEILTTS 345

[Close]

BLAST of Clc11G08070 vs. TAIR 10
Match: ATCG00340.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 115.9 bits (289), Expect = 5.8e-26
Identity = 59/110 (53.64%), Postives = 68/110 (61.82%), Query Frame = 0


Query: 228 EGATPFFTLNWSKYAE------------------FLTFRGGLDPVTGGLWLTDIAHHHLA 287
           +G  P FT  W+ YA+                   LT  GG  P T  LWLTD+AHHHLA
Sbjct: 220 QGLGPLFTGQWNLYAQNPDSSSHLFGTSQGSGTAILTLLGGFHPQTQSLWLTDMAHHHLA 279

Query: 288 IAILFLIAGHMYRTNWGIGHGIKDILEAH--KGPFTGQGHKGLYEILTTS 318
           IAILFLIAGHMYRTN+GIGH IKD+LEAH   G   G+GHKGLY+ +  S
Sbjct: 280 IAILFLIAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRGHKGLYDTINNS 329

The following BLAST results are available for this feature:

BLAST of Clc11G08070 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009752370.1	7.2e-103	99.47	Ycf2 protein [Bryonia marmorata] >YP_009752388.1 Ycf2 protein [Bryonia marmorata...	[more]
QJR53001.1	7.2e-103	99.47	hypothetical protein RF2 [Herpetospermum pedunculosum] >QJR53017.1 hypothetical ...	[more]
YP_009420838.1	7.2e-103	99.47	Ycf2 [Citrullus colocynthis] >YP_009420857.1 Ycf2 [Citrullus colocynthis] >YP_00...	[more]
QZL38725.1	7.2e-103	99.47	Ycf2 protein [Citrullus ecirrhosus] >QZL38746.1 Ycf2 protein [Citrullus ecirrhos...	[more]
YP_009752726.1	7.2e-103	99.47	Ycf2 protein [Ampelosycios humblotii] >QIT05207.1 Ycf2 protein [Ampelosycios hum...	[more]

BLAST of Clc11G08070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4GYV4	3.8e-99	94.71	Protein Ycf2 OS=Populus trichocarpa OX=3694 GN=ycf2-1 PE=3 SV=1	[more]
Q14F97	8.5e-99	94.71	Protein Ycf2 OS=Populus alba OX=43335 GN=ycf2-A PE=3 SV=1	[more]
A4QKE8	3.2e-98	93.12	Protein Ycf2 OS=Barbarea verna OX=50458 GN=ycf2-A PE=3 SV=1	[more]
A4QJF8	9.4e-98	92.71	Protein Ycf2 OS=Aethionema cordifolium OX=434059 GN=ycf2-A PE=3 SV=1	[more]
B1NWJ3	9.4e-98	93.12	Protein Ycf2 OS=Manihot esculenta OX=3983 GN=ycf2 PE=3 SV=1	[more]

BLAST of Clc11G08070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A343F2F1	3.5e-103	99.47	Protein Ycf2 OS=Citrullus colocynthis OX=252529 GN=ycf2 PE=3 SV=1	[more]
A0A7G9IT80	3.5e-103	99.47	Protein Ycf2 OS=Lagenaria siceraria var. microcarpa OX=2726058 GN=ycf2 PE=3 SV=1	[more]
A0A6H0EWH7	3.5e-103	99.47	Protein Ycf2 OS=Gerrardanthus macrorhizus OX=386173 GN=ycf2 PE=3 SV=1	[more]
A0A249RXF2	3.5e-103	99.47	Protein Ycf2 OS=Citrullus rehmii OX=260675 GN=ycf2 PE=3 SV=1	[more]
A0A6C0U8W2	3.5e-103	99.47	Protein Ycf2 OS=Siraitia siamensis OX=2695833 GN=ycf2 PE=3 SV=1	[more]

BLAST of Clc11G08070 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00860.1	3.3e-98	92.19	Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG01280.1	3.3e-98	92.19	Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG00350.1	4.4e-74	99.22	Photosystem I, PsaA/PsaB protein	[more]
ATCG00340.1	5.8e-26	53.64	Photosystem I, PsaA/PsaB protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036408	Photosystem I PsaA/PsaB superfamily	GENE3D	1.20.1130.10	Photosystem I PsaA/PsaB	coord: 176..317 e-value: 3.1E-58 score: 199.1
IPR036408	Photosystem I PsaA/PsaB superfamily	SUPERFAMILY	81558	Photosystem I subunits PsaA/PsaB	coord: 190..317
IPR001280	Photosystem I PsaA/PsaB	PFAM	PF00223	PsaA_PsaB	coord: 190..317 e-value: 3.9E-59 score: 200.6
IPR008543	Uncharacterised protein family Ycf2	PFAM	PF05695	DUF825	coord: 1..52 e-value: 4.6E-23 score: 80.5
None	No IPR available	PANTHER	PTHR33078	PROTEIN YCF2-RELATED	coord: 2..189
None	No IPR available	PANTHER	PTHR33078:SF50	YCF2-LIKE PROTEIN	coord: 2..189

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G08070.1	Clc11G08070.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity