Clc11G08065 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCTCTGTGCTGGGGCTCTCGGAAGCCCACAGCTTCTGCTTCTGAGTGGCATTGGACCTGGAACTGGACGATCCTATTTGGTCAAATACCTAGCGACAAACTCCTATCTTCCTTTCATTACAGTATTTCTGAACACGTTCCTGGATAACAAGCCTGAGGGTTTTCTTATTGATGATAGTGACGATATTGATGATAGTGGCGATATTGATGATAGTGACGATATCGACCGTGACCTTGATACGGAGCTGGAGCTTCTAATTATGATGAATGCGCTAACTATGGATATGATGCTGGAAATAGACCGATTTTATATCACCCTTCAACATTTTTTCGTATTTTGTGTTTGTCTGTAATGAATAATTGTAAATCCAGGTAACAATTCATACATCTTTTTCACTTTATTTTAGGGAAAGATTATTTGAGTCTCTTAAGTTAAATAAACTCGGTAGAAAATGCTGATATGGATTGTTATTATGTATTTTTATTGTTTTATTTCTTTTTTTGTGAAAAAGATTTTTATTTTGGATCTATCTAATTGATGGGTTAATCCGAATATACATTTATTTATTATAATAAAAAGTAATAAATCCTTTTTTTTTACAAAACTTTATTCAAATAATAATCTTGAGGTAGGAAATTTTCAATCAATTAAATCGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAGATTCTTATCCAAGACTTGTATCATTTGATGATGTAGGCAGGTCCGCTATAAAGCCTACCGGCCAGAAAGTCTTCAAGAACGGGAAAGCTGACCAAAAGACTATTCTATAA ATGCTCTGTGCTGGGGCTCTCGGAAGCCCACAGCTTCTGCTTCTGAGTGGCATTGGACCTGGAACTGGACGATCCTATTTGGTCAAATACCTAGCGACAAACTCCTATCTTCCTTTCATTACAGTATTTCTGAACACGTTCCTGGATAACAAGCCTGAGGGTTTTCTTATTGATGATAGTGACGATATTGATGATAGTGGCGATATTGATGATAGTGACGATATCGACCGCAGGTCCGCTATAAAGCCTACCGGCCAGAAAGTCTTCAAGAACGGGAAAGCTGACCAAAAGACTATTCTATAA ATGCTCTGTGCTGGGGCTCTCGGAAGCCCACAGCTTCTGCTTCTGAGTGGCATTGGACCTGGAACTGGACGATCCTATTTGGTCAAATACCTAGCGACAAACTCCTATCTTCCTTTCATTACAGTATTTCTGAACACGTTCCTGGATAACAAGCCTGAGGGTTTTCTTATTGATGATAGTGACGATATTGATGATAGTGGCGATATTGATGATAGTGACGATATCGACCGCAGGTCCGCTATAAAGCCTACCGGCCAGAAAGTCTTCAAGAACGGGAAAGCTGACCAAAAGACTATTCTATAA MLCAGALGSPQLLLLSGIGPGTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDRRSAIKPTGQKVFKNGKADQKTIL Homology
BLAST of Clc11G08065 vs. NCBI nr
Match: YP_009420838.1 (Ycf2 [Citrullus colocynthis] >YP_009420857.1 Ycf2 [Citrullus colocynthis] >YP_009431686.1 Ycf2 [Citrullus rehmii] >YP_009431705.1 Ycf2 [Citrullus rehmii] >ASP44531.1 Ycf2 [Citrullus colocynthis] >ASP44534.1 Ycf2 [Citrullus colocynthis] >ASY96311.1 Ycf2 [Citrullus rehmii] >ASY96314.1 Ycf2 [Citrullus rehmii]) HSP 1 Score: 112.5 bits (280), Expect = 2.2e-21 Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0
BLAST of Clc11G08065 vs. NCBI nr
Match: QZL38725.1 (Ycf2 protein [Citrullus ecirrhosus] >QZL38746.1 Ycf2 protein [Citrullus ecirrhosus]) HSP 1 Score: 112.5 bits (280), Expect = 2.2e-21 Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0
BLAST of Clc11G08065 vs. NCBI nr
Match: YP_009326033.1 (Ycf2 [Citrullus lanatus] >YP_009326052.1 Ycf2 [Citrullus lanatus] >YP_009348075.1 Ycf2 [Citrullus mucosospermus] >YP_009348094.1 Ycf2 [Citrullus mucosospermus] >YP_009431600.1 Ycf2 [Citrullus amarus] >YP_009431619.1 Ycf2 [Citrullus amarus] >APW82506.1 Ycf2 [Citrullus lanatus subsp. vulgaris] >APD52524.1 Ycf2 [Citrullus lanatus] >APD52544.1 Ycf2 [Citrullus lanatus] >APW82525.1 Ycf2 [Citrullus lanatus subsp. vulgaris] >APW82591.1 Ycf2 [Citrullus lanatus subsp. vulgaris]) HSP 1 Score: 112.5 bits (280), Expect = 2.2e-21 Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0
BLAST of Clc11G08065 vs. NCBI nr
Match: YP_009752624.1 (Ycf2 protein [Trichosanthes homophylla] >YP_009752642.1 Ycf2 protein [Trichosanthes homophylla] >QIT05105.1 Ycf2 protein [Trichosanthes kirilowii] >QIT05020.1 Ycf2 protein [Trichosanthes homophylla] >QIT05038.1 Ycf2 protein [Trichosanthes homophylla] >QIT05123.1 Ycf2 protein [Trichosanthes kirilowii] >QJD26338.1 Ycf2 [Trichosanthes kirilowii]) HSP 1 Score: 110.5 bits (275), Expect = 8.2e-21 Identity = 60/72 (83.33%), Postives = 64/72 (88.89%), Query Frame = 0
BLAST of Clc11G08065 vs. NCBI nr
Match: QIT04093.1 (Ycf2 protein [Luffa aegyptiaca] >QIT04110.1 Ycf2 protein [Luffa aegyptiaca] >QKX48604.1 hypothetical chloroplast RF21 [Luffa aegyptiaca] >QKX48623.1 hypothetical chloroplast RF21 [Luffa aegyptiaca]) HSP 1 Score: 108.6 bits (270), Expect = 3.1e-20 Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 0
BLAST of Clc11G08065 vs. ExPASy Swiss-Prot
Match: B1NWJ3 (Protein Ycf2 OS=Manihot esculenta OX=3983 GN=ycf2 PE=3 SV=1) HSP 1 Score: 101.7 bits (252), Expect = 5.0e-21 Identity = 51/56 (91.07%), Postives = 54/56 (96.43%), Query Frame = 0
BLAST of Clc11G08065 vs. ExPASy Swiss-Prot
Match: Q14F97 (Protein Ycf2 OS=Populus alba OX=43335 GN=ycf2-A PE=3 SV=1) HSP 1 Score: 99.4 bits (246), Expect = 2.5e-20 Identity = 51/57 (89.47%), Postives = 53/57 (92.98%), Query Frame = 0
BLAST of Clc11G08065 vs. ExPASy Swiss-Prot
Match: A4GYV4 (Protein Ycf2 OS=Populus trichocarpa OX=3694 GN=ycf2-1 PE=3 SV=1) HSP 1 Score: 99.4 bits (246), Expect = 2.5e-20 Identity = 51/57 (89.47%), Postives = 53/57 (92.98%), Query Frame = 0
BLAST of Clc11G08065 vs. ExPASy Swiss-Prot
Match: A4GGE1 (Protein Ycf2 OS=Phaseolus vulgaris OX=3885 GN=ycf2-A PE=3 SV=1) HSP 1 Score: 94.0 bits (232), Expect = 1.0e-18 Identity = 50/57 (87.72%), Postives = 52/57 (91.23%), Query Frame = 0
BLAST of Clc11G08065 vs. ExPASy Swiss-Prot
Match: Q2QD30 (Protein Ycf2 OS=Cucumis sativus OX=3659 GN=ycf2-A PE=3 SV=1) HSP 1 Score: 93.6 bits (231), Expect = 1.4e-18 Identity = 54/71 (76.06%), Postives = 58/71 (81.69%), Query Frame = 0
BLAST of Clc11G08065 vs. ExPASy TrEMBL
Match: A0A343F2F1 (Protein Ycf2 OS=Citrullus colocynthis OX=252529 GN=ycf2 PE=3 SV=1) HSP 1 Score: 112.5 bits (280), Expect = 1.1e-21 Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0
BLAST of Clc11G08065 vs. ExPASy TrEMBL
Match: A0A249RXF2 (Protein Ycf2 OS=Citrullus rehmii OX=260675 GN=ycf2 PE=3 SV=1) HSP 1 Score: 112.5 bits (280), Expect = 1.1e-21 Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0
BLAST of Clc11G08065 vs. ExPASy TrEMBL
Match: A0A1P8LED5 (Protein Ycf2 OS=Citrullus mucosospermus OX=519315 GN=ycf2 PE=3 SV=1) HSP 1 Score: 112.5 bits (280), Expect = 1.1e-21 Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0
BLAST of Clc11G08065 vs. ExPASy TrEMBL
Match: A0A343A8H4 (Protein Ycf2 OS=Citrullus lanatus OX=3654 GN=ycf2 PE=3 SV=1) HSP 1 Score: 112.5 bits (280), Expect = 1.1e-21 Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0
BLAST of Clc11G08065 vs. ExPASy TrEMBL
Match: A0A1P8LF93 (Protein Ycf2 OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=ycf2 PE=3 SV=1) HSP 1 Score: 112.5 bits (280), Expect = 1.1e-21 Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0
BLAST of Clc11G08065 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core ) HSP 1 Score: 90.1 bits (222), Expect = 1.1e-18 Identity = 51/69 (73.91%), Postives = 57/69 (82.61%), Query Frame = 0
BLAST of Clc11G08065 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core ) HSP 1 Score: 90.1 bits (222), Expect = 1.1e-18 Identity = 51/69 (73.91%), Postives = 57/69 (82.61%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|