Clc11G08065 (gene) Watermelon (cordophanus) v2

Overview
NameClc11G08065
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionProtein Ycf2
LocationClcChr11: 7842910 .. 7843769 (-)
RNA-Seq ExpressionClc11G08065
SyntenyClc11G08065
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCTGTGCTGGGGCTCTCGGAAGCCCACAGCTTCTGCTTCTGAGTGGCATTGGACCTGGAACTGGACGATCCTATTTGGTCAAATACCTAGCGACAAACTCCTATCTTCCTTTCATTACAGTATTTCTGAACACGTTCCTGGATAACAAGCCTGAGGGTTTTCTTATTGATGATAGTGACGATATTGATGATAGTGGCGATATTGATGATAGTGACGATATCGACCGTGACCTTGATACGGAGCTGGAGCTTCTAATTATGATGAATGCGCTAACTATGGATATGATGCTGGAAATAGACCGATTTTATATCACCCTTCAACATTTTTTCGTATTTTGTGTTTGTCTGTAATGAATAATTGTAAATCCAGGTAACAATTCATACATCTTTTTCACTTTATTTTAGGGAAAGATTATTTGAGTCTCTTAAGTTAAATAAACTCGGTAGAAAATGCTGATATGGATTGTTATTATGTATTTTTATTGTTTTATTTCTTTTTTTGTGAAAAAGATTTTTATTTTGGATCTATCTAATTGATGGGTTAATCCGAATATACATTTATTTATTATAATAAAAAGTAATAAATCCTTTTTTTTTACAAAACTTTATTCAAATAATAATCTTGAGGTAGGAAATTTTCAATCAATTAAATCGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAGATTCTTATCCAAGACTTGTATCATTTGATGATGTAGGCAGGTCCGCTATAAAGCCTACCGGCCAGAAAGTCTTCAAGAACGGGAAAGCTGACCAAAAGACTATTCTATAA

mRNA sequence

ATGCTCTGTGCTGGGGCTCTCGGAAGCCCACAGCTTCTGCTTCTGAGTGGCATTGGACCTGGAACTGGACGATCCTATTTGGTCAAATACCTAGCGACAAACTCCTATCTTCCTTTCATTACAGTATTTCTGAACACGTTCCTGGATAACAAGCCTGAGGGTTTTCTTATTGATGATAGTGACGATATTGATGATAGTGGCGATATTGATGATAGTGACGATATCGACCGCAGGTCCGCTATAAAGCCTACCGGCCAGAAAGTCTTCAAGAACGGGAAAGCTGACCAAAAGACTATTCTATAA

Coding sequence (CDS)

ATGCTCTGTGCTGGGGCTCTCGGAAGCCCACAGCTTCTGCTTCTGAGTGGCATTGGACCTGGAACTGGACGATCCTATTTGGTCAAATACCTAGCGACAAACTCCTATCTTCCTTTCATTACAGTATTTCTGAACACGTTCCTGGATAACAAGCCTGAGGGTTTTCTTATTGATGATAGTGACGATATTGATGATAGTGGCGATATTGATGATAGTGACGATATCGACCGCAGGTCCGCTATAAAGCCTACCGGCCAGAAAGTCTTCAAGAACGGGAAAGCTGACCAAAAGACTATTCTATAA

Protein sequence

MLCAGALGSPQLLLLSGIGPGTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDRRSAIKPTGQKVFKNGKADQKTIL
Homology
BLAST of Clc11G08065 vs. NCBI nr
Match: YP_009420838.1 (Ycf2 [Citrullus colocynthis] >YP_009420857.1 Ycf2 [Citrullus colocynthis] >YP_009431686.1 Ycf2 [Citrullus rehmii] >YP_009431705.1 Ycf2 [Citrullus rehmii] >ASP44531.1 Ycf2 [Citrullus colocynthis] >ASP44534.1 Ycf2 [Citrullus colocynthis] >ASY96311.1 Ycf2 [Citrullus rehmii] >ASY96314.1 Ycf2 [Citrullus rehmii])

HSP 1 Score: 112.5 bits (280), Expect = 2.2e-21
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0

Query: 21   GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR 78
            GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR
Sbjct: 1636 GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR 1692

BLAST of Clc11G08065 vs. NCBI nr
Match: QZL38725.1 (Ycf2 protein [Citrullus ecirrhosus] >QZL38746.1 Ycf2 protein [Citrullus ecirrhosus])

HSP 1 Score: 112.5 bits (280), Expect = 2.2e-21
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0

Query: 21   GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR 78
            GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR
Sbjct: 1636 GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR 1692

BLAST of Clc11G08065 vs. NCBI nr
Match: YP_009326033.1 (Ycf2 [Citrullus lanatus] >YP_009326052.1 Ycf2 [Citrullus lanatus] >YP_009348075.1 Ycf2 [Citrullus mucosospermus] >YP_009348094.1 Ycf2 [Citrullus mucosospermus] >YP_009431600.1 Ycf2 [Citrullus amarus] >YP_009431619.1 Ycf2 [Citrullus amarus] >APW82506.1 Ycf2 [Citrullus lanatus subsp. vulgaris] >APD52524.1 Ycf2 [Citrullus lanatus] >APD52544.1 Ycf2 [Citrullus lanatus] >APW82525.1 Ycf2 [Citrullus lanatus subsp. vulgaris] >APW82591.1 Ycf2 [Citrullus lanatus subsp. vulgaris])

HSP 1 Score: 112.5 bits (280), Expect = 2.2e-21
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0

Query: 21   GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR 78
            GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR
Sbjct: 1636 GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR 1692

BLAST of Clc11G08065 vs. NCBI nr
Match: YP_009752624.1 (Ycf2 protein [Trichosanthes homophylla] >YP_009752642.1 Ycf2 protein [Trichosanthes homophylla] >QIT05105.1 Ycf2 protein [Trichosanthes kirilowii] >QIT05020.1 Ycf2 protein [Trichosanthes homophylla] >QIT05038.1 Ycf2 protein [Trichosanthes homophylla] >QIT05123.1 Ycf2 protein [Trichosanthes kirilowii] >QJD26338.1 Ycf2 [Trichosanthes kirilowii])

HSP 1 Score: 110.5 bits (275), Expect = 8.2e-21
Identity = 60/72 (83.33%), Postives = 64/72 (88.89%), Query Frame = 0

Query: 6    ALGSPQLLLLSGIGPGTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDD 65
            AL  P+ +L+ G   GTGRSYLVKYLATNSYLPFITVFLN FLDNKP+GFLIDDSDDIDD
Sbjct: 1621 ALSPPRGILVIG-SIGTGRSYLVKYLATNSYLPFITVFLNKFLDNKPKGFLIDDSDDIDD 1680

Query: 66   SGDIDDSDDIDR 78
            SGDIDDSDDIDR
Sbjct: 1681 SGDIDDSDDIDR 1691

BLAST of Clc11G08065 vs. NCBI nr
Match: QIT04093.1 (Ycf2 protein [Luffa aegyptiaca] >QIT04110.1 Ycf2 protein [Luffa aegyptiaca] >QKX48604.1 hypothetical chloroplast RF21 [Luffa aegyptiaca] >QKX48623.1 hypothetical chloroplast RF21 [Luffa aegyptiaca])

HSP 1 Score: 108.6 bits (270), Expect = 3.1e-20
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 0

Query: 21   GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR 78
            GTGRSYLVKYLATNSYLPFITVFLN FLDNKP+GFLIDDSDDIDDSGDIDDSDDIDR
Sbjct: 1638 GTGRSYLVKYLATNSYLPFITVFLNKFLDNKPKGFLIDDSDDIDDSGDIDDSDDIDR 1694

BLAST of Clc11G08065 vs. ExPASy Swiss-Prot
Match: B1NWJ3 (Protein Ycf2 OS=Manihot esculenta OX=3983 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 5.0e-21
Identity = 51/56 (91.07%), Postives = 54/56 (96.43%), Query Frame = 0

Query: 21   GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDID 77
            GTGRSYLVKYLATNSYLPF+TVFLN FL+NKP+GFLIDDSDDIDDS DIDDSDDID
Sbjct: 1633 GTGRSYLVKYLATNSYLPFVTVFLNKFLNNKPKGFLIDDSDDIDDSDDIDDSDDID 1688

BLAST of Clc11G08065 vs. ExPASy Swiss-Prot
Match: Q14F97 (Protein Ycf2 OS=Populus alba OX=43335 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.5e-20
Identity = 51/57 (89.47%), Postives = 53/57 (92.98%), Query Frame = 0

Query: 21   GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR 78
            GTGRSYLVKYLATNSY+PFITVFLN FLDNKP+GFLIDD DDIDDS DID SDDIDR
Sbjct: 1638 GTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDRDDIDDSDDIDVSDDIDR 1694

BLAST of Clc11G08065 vs. ExPASy Swiss-Prot
Match: A4GYV4 (Protein Ycf2 OS=Populus trichocarpa OX=3694 GN=ycf2-1 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.5e-20
Identity = 51/57 (89.47%), Postives = 53/57 (92.98%), Query Frame = 0

Query: 21   GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR 78
            GTGRSYLVKYLATNSY+PFITVFLN FLDNKP+GFLIDD DDIDDS DID SDDIDR
Sbjct: 1641 GTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDRDDIDDSDDIDVSDDIDR 1697

BLAST of Clc11G08065 vs. ExPASy Swiss-Prot
Match: A4GGE1 (Protein Ycf2 OS=Phaseolus vulgaris OX=3885 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.0e-18
Identity = 50/57 (87.72%), Postives = 52/57 (91.23%), Query Frame = 0

Query: 21   GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR 78
            GTGRSYLVKYLA NSY+PFITVFLN FLDNKP+GFLIDDSDDIDDS   DDSDDIDR
Sbjct: 1632 GTGRSYLVKYLAKNSYVPFITVFLNKFLDNKPKGFLIDDSDDIDDS---DDSDDIDR 1685

BLAST of Clc11G08065 vs. ExPASy Swiss-Prot
Match: Q2QD30 (Protein Ycf2 OS=Cucumis sativus OX=3659 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.4e-18
Identity = 54/71 (76.06%), Postives = 58/71 (81.69%), Query Frame = 0

Query: 9    SPQLLLLSGIGPGTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGF--LIDDSDDIDDS 68
            SP +L++  I  GTGRSYLVKYLATNSYLPFITVFLN F DNKP+      DDSDDIDDS
Sbjct: 1330 SPGILVIGSI--GTGRSYLVKYLATNSYLPFITVFLNKFRDNKPKFIDDSDDDSDDIDDS 1389

Query: 69   GDIDDSDDIDR 78
            GDIDDSDDIDR
Sbjct: 1390 GDIDDSDDIDR 1398

BLAST of Clc11G08065 vs. ExPASy TrEMBL
Match: A0A343F2F1 (Protein Ycf2 OS=Citrullus colocynthis OX=252529 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.1e-21
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0

Query: 21   GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR 78
            GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR
Sbjct: 1636 GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR 1692

BLAST of Clc11G08065 vs. ExPASy TrEMBL
Match: A0A249RXF2 (Protein Ycf2 OS=Citrullus rehmii OX=260675 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.1e-21
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0

Query: 21   GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR 78
            GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR
Sbjct: 1636 GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR 1692

BLAST of Clc11G08065 vs. ExPASy TrEMBL
Match: A0A1P8LED5 (Protein Ycf2 OS=Citrullus mucosospermus OX=519315 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.1e-21
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0

Query: 21   GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR 78
            GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR
Sbjct: 1636 GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR 1692

BLAST of Clc11G08065 vs. ExPASy TrEMBL
Match: A0A343A8H4 (Protein Ycf2 OS=Citrullus lanatus OX=3654 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.1e-21
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0

Query: 21   GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR 78
            GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR
Sbjct: 1636 GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR 1692

BLAST of Clc11G08065 vs. ExPASy TrEMBL
Match: A0A1P8LF93 (Protein Ycf2 OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.1e-21
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0

Query: 21   GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR 78
            GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR
Sbjct: 1636 GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR 1692

BLAST of Clc11G08065 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 90.1 bits (222), Expect = 1.1e-18
Identity = 51/69 (73.91%), Postives = 57/69 (82.61%), Query Frame = 0

Query: 9    SPQLLLLSGIGPGTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGD 68
            S  +L++  I  GTGRSYLVKYLATNSY+PFITVFLN FLDNKP+GF IDD  DIDDS D
Sbjct: 1641 SRSILVIGSI--GTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFFIDDI-DIDDSDD 1700

Query: 69   IDDSDDIDR 78
            ID S+DIDR
Sbjct: 1701 IDASNDIDR 1706

BLAST of Clc11G08065 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 90.1 bits (222), Expect = 1.1e-18
Identity = 51/69 (73.91%), Postives = 57/69 (82.61%), Query Frame = 0

Query: 9    SPQLLLLSGIGPGTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGD 68
            S  +L++  I  GTGRSYLVKYLATNSY+PFITVFLN FLDNKP+GF IDD  DIDDS D
Sbjct: 1641 SRSILVIGSI--GTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFFIDDI-DIDDSDD 1700

Query: 69   IDDSDDIDR 78
            ID S+DIDR
Sbjct: 1701 IDASNDIDR 1706

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
YP_009420838.12.2e-21100.00Ycf2 [Citrullus colocynthis] >YP_009420857.1 Ycf2 [Citrullus colocynthis] >YP_00... [more]
QZL38725.12.2e-21100.00Ycf2 protein [Citrullus ecirrhosus] >QZL38746.1 Ycf2 protein [Citrullus ecirrhos... [more]
YP_009326033.12.2e-21100.00Ycf2 [Citrullus lanatus] >YP_009326052.1 Ycf2 [Citrullus lanatus] >YP_009348075.... [more]
YP_009752624.18.2e-2183.33Ycf2 protein [Trichosanthes homophylla] >YP_009752642.1 Ycf2 protein [Trichosant... [more]
QIT04093.13.1e-2096.49Ycf2 protein [Luffa aegyptiaca] >QIT04110.1 Ycf2 protein [Luffa aegyptiaca] >QKX... [more]
Match NameE-valueIdentityDescription
B1NWJ35.0e-2191.07Protein Ycf2 OS=Manihot esculenta OX=3983 GN=ycf2 PE=3 SV=1[more]
Q14F972.5e-2089.47Protein Ycf2 OS=Populus alba OX=43335 GN=ycf2-A PE=3 SV=1[more]
A4GYV42.5e-2089.47Protein Ycf2 OS=Populus trichocarpa OX=3694 GN=ycf2-1 PE=3 SV=1[more]
A4GGE11.0e-1887.72Protein Ycf2 OS=Phaseolus vulgaris OX=3885 GN=ycf2-A PE=3 SV=1[more]
Q2QD301.4e-1876.06Protein Ycf2 OS=Cucumis sativus OX=3659 GN=ycf2-A PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A343F2F11.1e-21100.00Protein Ycf2 OS=Citrullus colocynthis OX=252529 GN=ycf2 PE=3 SV=1[more]
A0A249RXF21.1e-21100.00Protein Ycf2 OS=Citrullus rehmii OX=260675 GN=ycf2 PE=3 SV=1[more]
A0A1P8LED51.1e-21100.00Protein Ycf2 OS=Citrullus mucosospermus OX=519315 GN=ycf2 PE=3 SV=1[more]
A0A343A8H41.1e-21100.00Protein Ycf2 OS=Citrullus lanatus OX=3654 GN=ycf2 PE=3 SV=1[more]
A0A1P8LF931.1e-21100.00Protein Ycf2 OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=ycf2 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
ATCG00860.11.1e-1873.91Chloroplast Ycf2;ATPase, AAA type, core [more]
ATCG01280.11.1e-1873.91Chloroplast Ycf2;ATPase, AAA type, core [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036188FAD/NAD(P)-binding domain superfamilyGENE3D3.50.50.60coord: 1..34
e-value: 2.9E-6
score: 28.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..77
NoneNo IPR availablePANTHERPTHR33078PROTEIN YCF2-RELATEDcoord: 21..77
IPR008543Uncharacterised protein family Ycf2PANTHERPTHR33078:SF22PROTEIN YCF2coord: 21..77
IPR000172Glucose-methanol-choline oxidoreductase, N-terminalPROSITEPS00624GMC_OXRED_2coord: 5..19

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc11G08065.1Clc11G08065.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005524 ATP binding
molecular_function GO:0016887 ATP hydrolysis activity
molecular_function GO:0050660 flavin adenine dinucleotide binding
molecular_function GO:0016614 oxidoreductase activity, acting on CH-OH group of donors