Clc11G08000 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G08000
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Photosystem I P700 chlorophyll a apoprotein A1
Location	ClcChr11: 7828379 .. 7828675 (-)
RNA-Seq Expression	Clc11G08000
Synteny	Clc11G08000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGGGGCTAAGCGATCTGCCGAAGCTGTGGGATGTAAAAATGCATCGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCACCTGTGCGAGCAGTGGTGGACGAAGCGGAAGCGAGATTAACCAATTTCTAAATGCTGGAGTAGATCCTAAAGAGATTCCACTTCCTCATGAATTTATCTTGAATCGGGATCTTTTGGCGCAACTTTATCCTAGTTTTGCTGAGGGAACAACCCCATTTTTCACTTTGAATTGGTCAAAATATGCGGAATTTCTTACTTTTCGAGGAGCGCATTAG

mRNA sequence

ATGAACGGGGCTAAGCGATCTGCCGAAGCTGTGGGATGTAAAAATGCATCGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCACCTGTGCGAGCAGTGGTGGACGAAGCGGAAGCGAGATTAACCAATTTCTAAATGCTGGAGTAGATCCTAAAGAGATTCCACTTCCTCATGAATTTATCTTGAATCGGGATCTTTTGGCGCAACTTTATCCTAGTTTTGCTGAGGGAACAACCCCATTTTTCACTTTGAATTGGTCAAAATATGCGGAATTTCTTACTTTTCGAGGAGCGCATTAG

Coding sequence (CDS)

ATGAACGGGGCTAAGCGATCTGCCGAAGCTGTGGGATGTAAAAATGCATCGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCACCTGTGCGAGCAGTGGTGGACGAAGCGGAAGCGAGATTAACCAATTTCTAAATGCTGGAGTAGATCCTAAAGAGATTCCACTTCCTCATGAATTTATCTTGAATCGGGATCTTTTGGCGCAACTTTATCCTAGTTTTGCTGAGGGAACAACCCCATTTTTCACTTTGAATTGGTCAAAATATGCGGAATTTCTTACTTTTCGAGGAGCGCATTAG

Protein sequence

MNGAKRSAEAVGCKNASVGERSALEGSTCASSGGRSGSEINQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRGAH

Homology

[Close]

BLAST of Clc11G08000 vs. NCBI nr
Match: ATL62924.1 (photosystem I P700 chlorophyll a apoprotein A1 [Mitchella repens])

HSP 1 Score: 122.9 bits (307), Expect = 1.6e-24
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 40  INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRG 97
           INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEG+TPFFTLNWSKYAEFLTFRG
Sbjct: 221 INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGSTPFFTLNWSKYAEFLTFRG 277

[Close]

BLAST of Clc11G08000 vs. NCBI nr
Match: ATL62137.1 (photosystem I P700 chlorophyll a apoprotein A1 [Schizocolea linderi])

HSP 1 Score: 122.9 bits (307), Expect = 1.6e-24
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 40  INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRG 97
           INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEG+TPFFTLNWSKYAEFLTFRG
Sbjct: 221 INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGSTPFFTLNWSKYAEFLTFRG 277

[Close]

BLAST of Clc11G08000 vs. NCBI nr
Match: QTZ18577.1 (photosystem I P700 apoprotein A1 [Damnacanthus indicus])

HSP 1 Score: 122.9 bits (307), Expect = 1.6e-24
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 40  INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRG 97
           INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEG+TPFFTLNWSKYAEFLTFRG
Sbjct: 221 INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGSTPFFTLNWSKYAEFLTFRG 277

[Close]

BLAST of Clc11G08000 vs. NCBI nr
Match: ATL62060.1 (photosystem I P700 chlorophyll a apoprotein A1 [Prismatomeris sp. Kainulainen et al. 39])

HSP 1 Score: 122.9 bits (307), Expect = 1.6e-24
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 40  INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRG 97
           INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEG+TPFFTLNWSKYAEFLTFRG
Sbjct: 221 INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGSTPFFTLNWSKYAEFLTFRG 277

[Close]

BLAST of Clc11G08000 vs. NCBI nr
Match: QFS20328.1 (photosystem I P700 chlorophyll a apoprotein A1 [Saprosma merrillii])

HSP 1 Score: 122.9 bits (307), Expect = 1.6e-24
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 40  INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRG 97
           INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEG+TPFFTLNWSKYAEFLTFRG
Sbjct: 221 INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGSTPFFTLNWSKYAEFLTFRG 277

[Close]

BLAST of Clc11G08000 vs. ExPASy Swiss-Prot
Match: A0A335 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Coffea arabica OX=13443 GN=psaA PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.7e-27
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 40  INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRG 97
           INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEG TPFFTLNWSKYAEFLTFRG
Sbjct: 221 INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGATPFFTLNWSKYAEFLTFRG 277

[Close]

BLAST of Clc11G08000 vs. ExPASy Swiss-Prot
Match: Q2QD89 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis sativus OX=3659 GN=psaA PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.7e-27
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 40  INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRG 97
           INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEG TPFFTLNWSKYAEFLTFRG
Sbjct: 221 INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGATPFFTLNWSKYAEFLTFRG 277

[Close]

BLAST of Clc11G08000 vs. ExPASy Swiss-Prot
Match: Q49KZ8 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=psaA PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.7e-27
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 40  INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRG 97
           INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEG TPFFTLNWSKYAEFLTFRG
Sbjct: 221 INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGATPFFTLNWSKYAEFLTFRG 277

[Close]

BLAST of Clc11G08000 vs. ExPASy Swiss-Prot
Match: A0ZZ35 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Gossypium barbadense OX=3634 GN=psaA PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.7e-27
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 40  INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRG 97
           INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEG TPFFTLNWSKYAEFLTFRG
Sbjct: 221 INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGATPFFTLNWSKYAEFLTFRG 277

[Close]

BLAST of Clc11G08000 vs. ExPASy Swiss-Prot
Match: Q2L907 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Gossypium hirsutum OX=3635 GN=psaA PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.7e-27
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 40  INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRG 97
           INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEG TPFFTLNWSKYAEFLTFRG
Sbjct: 221 INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGATPFFTLNWSKYAEFLTFRG 277

[Close]

BLAST of Clc11G08000 vs. ExPASy TrEMBL
Match: A0A6F8FMI5 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Mitchella repens OX=45181 GN=psaA PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 7.6e-25
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 40  INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRG 97
           INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEG+TPFFTLNWSKYAEFLTFRG
Sbjct: 221 INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGSTPFFTLNWSKYAEFLTFRG 277

[Close]

BLAST of Clc11G08000 vs. ExPASy TrEMBL
Match: A0A6F8FJT8 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Prismatomeris sp. Kainulainen et al. 39 OX=2042815 GN=psaA PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 7.6e-25
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 40  INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRG 97
           INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEG+TPFFTLNWSKYAEFLTFRG
Sbjct: 221 INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGSTPFFTLNWSKYAEFLTFRG 277

[Close]

BLAST of Clc11G08000 vs. ExPASy TrEMBL
Match: A0A5P8TZ73 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Saprosma merrillii OX=2661645 GN=psaA PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 7.6e-25
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 40  INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRG 97
           INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEG+TPFFTLNWSKYAEFLTFRG
Sbjct: 221 INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGSTPFFTLNWSKYAEFLTFRG 277

[Close]

BLAST of Clc11G08000 vs. ExPASy TrEMBL
Match: A0A6F8F1G7 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Schizocolea linderi OX=353847 GN=psaA PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 7.6e-25
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 40  INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRG 97
           INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEG+TPFFTLNWSKYAEFLTFRG
Sbjct: 221 INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGSTPFFTLNWSKYAEFLTFRG 277

[Close]

BLAST of Clc11G08000 vs. ExPASy TrEMBL
Match: A0A218KG56 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis sativus var. hardwickii OX=319220 GN=psaA PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.0e-24
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 40  INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRG 97
           INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEG TPFFTLNWSKYAEFLTFRG
Sbjct: 221 INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGATPFFTLNWSKYAEFLTFRG 277

[Close]

BLAST of Clc11G08000 vs. TAIR 10
Match: ATCG00350.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 121.3 bits (303), Expect = 4.3e-28
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 40  INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRG 97
           INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEG TPFFTLNWSKY+EFLTFRG
Sbjct: 221 INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGATPFFTLNWSKYSEFLTFRG 277

The following BLAST results are available for this feature:

BLAST of Clc11G08000 vs. NCBI nr


Match Name	E-value	Identity	Description
ATL62924.1	1.6e-24	98.25	photosystem I P700 chlorophyll a apoprotein A1 [Mitchella repens]	[more]
ATL62137.1	1.6e-24	98.25	photosystem I P700 chlorophyll a apoprotein A1 [Schizocolea linderi]	[more]
QTZ18577.1	1.6e-24	98.25	photosystem I P700 apoprotein A1 [Damnacanthus indicus]	[more]
ATL62060.1	1.6e-24	98.25	photosystem I P700 chlorophyll a apoprotein A1 [Prismatomeris sp. Kainulainen et...	[more]
QFS20328.1	1.6e-24	98.25	photosystem I P700 chlorophyll a apoprotein A1 [Saprosma merrillii]	[more]

BLAST of Clc11G08000 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A0A335	2.7e-27	98.25	Photosystem I P700 chlorophyll a apoprotein A1 OS=Coffea arabica OX=13443 GN=psa...	[more]
Q2QD89	2.7e-27	98.25	Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis sativus OX=3659 GN=psa...	[more]
Q49KZ8	2.7e-27	98.25	Photosystem I P700 chlorophyll a apoprotein A1 OS=Eucalyptus globulus subsp. glo...	[more]
A0ZZ35	2.7e-27	98.25	Photosystem I P700 chlorophyll a apoprotein A1 OS=Gossypium barbadense OX=3634 G...	[more]
Q2L907	2.7e-27	98.25	Photosystem I P700 chlorophyll a apoprotein A1 OS=Gossypium hirsutum OX=3635 GN=...	[more]

BLAST of Clc11G08000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6F8FMI5	7.6e-25	98.25	Photosystem I P700 chlorophyll a apoprotein A1 OS=Mitchella repens OX=45181 GN=p...	[more]
A0A6F8FJT8	7.6e-25	98.25	Photosystem I P700 chlorophyll a apoprotein A1 OS=Prismatomeris sp. Kainulainen ...	[more]
A0A5P8TZ73	7.6e-25	98.25	Photosystem I P700 chlorophyll a apoprotein A1 OS=Saprosma merrillii OX=2661645 ...	[more]
A0A6F8F1G7	7.6e-25	98.25	Photosystem I P700 chlorophyll a apoprotein A1 OS=Schizocolea linderi OX=353847 ...	[more]
A0A218KG56	1.0e-24	98.25	Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis sativus var. hardwicki...	[more]

BLAST of Clc11G08000 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00350.1	4.3e-28	96.49	Photosystem I, PsaA/PsaB protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001280	Photosystem I PsaA/PsaB	PFAM	PF00223	PsaA_PsaB	coord: 40..96 e-value: 5.8E-16 score: 57.9
IPR036408	Photosystem I PsaA/PsaB superfamily	GENE3D	1.20.1130.10	Photosystem I PsaA/PsaB	coord: 38..98 e-value: 2.1E-14 score: 54.2
IPR036408	Photosystem I PsaA/PsaB superfamily	SUPERFAMILY	81558	Photosystem I subunits PsaA/PsaB	coord: 40..96
None	No IPR available	PANTHER	PTHR30128	OUTER MEMBRANE PROTEIN, OMPA-RELATED	coord: 39..97
IPR006243	Photosystem I PsaA	PANTHER	PTHR30128:SF60	PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A1	coord: 39..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G08000.1	Clc11G08000.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:0015979	photosynthesis
biological_process	GO:0018298	protein-chromophore linkage
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0046872	metal ion binding