Clc11G07923 (gene) Watermelon (cordophanus) v2

Overview
NameClc11G07923
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description30S ribosomal protein S12, chloroplastic
LocationClcChr11: 7802949 .. 7803612 (+)
RNA-Seq ExpressionClc11G07923
SyntenyClc11G07923
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCTGATGGGTGGTTTTGCTAGAATAGGCAATAATGAGGTCACTATTTTAGTAAATGATGAGGAGAAGGCTAGTGACATTGATCCACAAGAAGCTCAGTAAACTCTTGAAATAGCGGAAGCTCGAATTATCCGAAGAGGATCGCTTAACCGTAGCACGAGCACGAAAAATTGAGCCTTTCTTATCACAACCTTTTTTCGTAGCAGAAGTATTTACTGGTTCCCCGGGGAAATACGTTGGCCTAGCAGAAACAATTAAAAAAAGGGGGTTCAAATCATTTTATCGACATGAGTGTTCTATATCGAAAAAAAAATCCCAACTATTTGAAACGATTTATGTATTAACATAGTAGTAGAAAGAGTACCATGCTGCGTCCGGACTTCAAACGGTTTAGCTTTAACCATGTTAATAGTCCCACATTATTGGTTGATAGAGAATCAAATCTGCCTTACGTAAAGTTGTCAGAGTACGCTTAATCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAG

mRNA sequence

ATGGCTCTGATGGGTGGTTTTGCTAGAATAGGCAATAATGAGGTCACTATTTTAGTAAATGATGAGGAGAAGGCTAGTGACATTGATCCACAAGAAGCTCAAGTACGCTTAATCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAG

Coding sequence (CDS)

ATGGCTCTGATGGGTGGTTTTGCTAGAATAGGCAATAATGAGGTCACTATTTTAGTAAATGATGAGGAGAAGGCTAGTGACATTGATCCACAAGAAGCTCAAGTACGCTTAATCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAG

Protein sequence

MALMGGFARIGNNEVTILVNDEEKASDIDPQEAQVRLISGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Homology
[Close]
BLAST of Clc11G07923 vs. NCBI nr
Match: QWW89705.1 (ribosomal protein S12 [Zamia fischeri] >QWW89706.1 ribosomal protein S12 [Zamia fischeri])

HSP 1 Score: 133.7 bits (335), Expect = 8.9e-28
Identity = 68/88 (77.27%), Postives = 72/88 (81.82%), Query Frame = 0 

Query: 11  GNNEVTILVNDEEKASDIDPQEAQVRLISGFEITAYIPGIGHNLQEHSVVLVRGGRVKDL 70
           GN  V       +K +    + A+VRL SGFEITAYIPGIGHNLQEHSVVLVRGGRVKDL
Sbjct: 51  GNLSVNFSTTTPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDL 110

Query: 71  PGVRYHIVRGTLDAVGVKDRQQGRSSAL 99
           PGVRYHIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 111 PGVRYHIVRGTLDAVGVKDRQQGRSSAL 138

[Close]
BLAST of Clc11G07923 vs. NCBI nr
Match: AEQ37137.1 (ribosomal protein S12 [Ginkgo biloba] >AEQ37174.1 ribosomal protein S12 [Ginkgo biloba])

HSP 1 Score: 133.7 bits (335), Expect = 8.9e-28
Identity = 68/88 (77.27%), Postives = 72/88 (81.82%), Query Frame = 0 

Query: 11  GNNEVTILVNDEEKASDIDPQEAQVRLISGFEITAYIPGIGHNLQEHSVVLVRGGRVKDL 70
           GN  V       +K +    + A+VRL SGFEITAYIPGIGHNLQEHSVVLVRGGRVKDL
Sbjct: 50  GNLSVNFSTTTPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDL 109

Query: 71  PGVRYHIVRGTLDAVGVKDRQQGRSSAL 99
           PGVRYHIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 110 PGVRYHIVRGTLDAVGVKDRQQGRSSAL 137

[Close]
BLAST of Clc11G07923 vs. NCBI nr
Match: YP_008815054.1 (ribosomal protein S12 [Metapanax delavayi] >AGG39190.1 ribosomal protein S12 [Metapanax delavayi])

HSP 1 Score: 133.7 bits (335), Expect = 8.9e-28
Identity = 70/98 (71.43%), Postives = 74/98 (75.51%), Query Frame = 0 

Query: 7   FARIGNNEVTILVNDEEKASDIDPQE--------AQVRLISGFEITAYIPGIGHNLQEHS 66
           + RIG N    L N   K   I P++        A+VRL SGFEITAYIPGIGHN QEHS
Sbjct: 61  YRRIGYNRKRTLFNSVSKKKTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHS 120

Query: 67  VVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSS 97
           VVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSS
Sbjct: 121 VVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSS 158

[Close]
BLAST of Clc11G07923 vs. NCBI nr
Match: KAG6621065.1 (hypothetical protein I3842_Q037900, partial [Carya illinoinensis])

HSP 1 Score: 132.5 bits (332), Expect = 2.0e-27
Identity = 68/88 (77.27%), Postives = 72/88 (81.82%), Query Frame = 0 

Query: 11  GNNEVTILVNDEEKASDIDPQEAQVRLISGFEITAYIPGIGHNLQEHSVVLVRGGRVKDL 70
           GN  V       +K +    + A+VRL SGFEITAYIPGIGHNLQEHSVVLVRGGRVKDL
Sbjct: 13  GNLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDL 72

Query: 71  PGVRYHIVRGTLDAVGVKDRQQGRSSAL 99
           PGVRYHIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 73  PGVRYHIVRGTLDAVGVKDRQQGRSSAL 100

[Close]
BLAST of Clc11G07923 vs. NCBI nr
Match: YP_008815009.1 (ribosomal protein S12 [Metapanax delavayi] >AGG39177.1 ribosomal protein S12 [Metapanax delavayi])

HSP 1 Score: 132.1 bits (331), Expect = 2.6e-27
Identity = 69/97 (71.13%), Postives = 73/97 (75.26%), Query Frame = 0 

Query: 7   FARIGNNEVTILVNDEEKASDIDPQE--------AQVRLISGFEITAYIPGIGHNLQEHS 66
           + RIG N    L N   K   I P++        A+VRL SGFEITAYIPGIGHN QEHS
Sbjct: 61  YRRIGYNRKRTLFNSVSKKKTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHS 120

Query: 67  VVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 96
           VVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Sbjct: 121 VVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 157

[Close]
BLAST of Clc11G07923 vs. ExPASy Swiss-Prot
Match: Q1KXY0 (30S ribosomal protein S12, chloroplastic OS=Helianthus annuus OX=4232 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.9e-29
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 0 

Query: 33  AQVRLISGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ 92
           A+VRL SGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ
Sbjct: 53  ARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ 112

Query: 93  GRSSAL 99
           GRSSAL
Sbjct: 113 GRSSAL 118

[Close]
BLAST of Clc11G07923 vs. ExPASy Swiss-Prot
Match: Q332V3 (30S ribosomal protein S12, chloroplastic OS=Lactuca sativa OX=4236 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.9e-29
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 0 

Query: 33  AQVRLISGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ 92
           A+VRL SGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ
Sbjct: 53  ARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ 112

Query: 93  GRSSAL 99
           GRSSAL
Sbjct: 113 GRSSAL 118

[Close]
BLAST of Clc11G07923 vs. ExPASy Swiss-Prot
Match: Q0G9J5 (30S ribosomal protein S12, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.9e-29
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 0 

Query: 33  AQVRLISGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ 92
           A+VRL SGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ
Sbjct: 53  ARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ 112

Query: 93  GRSSAL 99
           GRSSAL
Sbjct: 113 GRSSAL 118

[Close]
BLAST of Clc11G07923 vs. ExPASy Swiss-Prot
Match: A4QJV5 (30S ribosomal protein S12-A, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.4e-28
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 0 

Query: 33  AQVRLISGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ 92
           A+VRL SGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ
Sbjct: 53  ARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ 112

Query: 93  GRS 96
           GRS
Sbjct: 113 GRS 115

[Close]
BLAST of Clc11G07923 vs. ExPASy Swiss-Prot
Match: A4QJX7 (30S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN=rps12-B PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.4e-28
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 0 

Query: 33  AQVRLISGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ 92
           A+VRL SGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ
Sbjct: 54  ARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ 113

Query: 93  GRS 96
           GRS
Sbjct: 114 GRS 116

[Close]
BLAST of Clc11G07923 vs. ExPASy TrEMBL
Match: I6N9H0 (Ribosomal protein S12 OS=Ginkgo biloba OX=3311 GN=rps12 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 4.3e-28
Identity = 68/88 (77.27%), Postives = 72/88 (81.82%), Query Frame = 0 

Query: 11  GNNEVTILVNDEEKASDIDPQEAQVRLISGFEITAYIPGIGHNLQEHSVVLVRGGRVKDL 70
           GN  V       +K +    + A+VRL SGFEITAYIPGIGHNLQEHSVVLVRGGRVKDL
Sbjct: 50  GNLSVNFSTTTPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDL 109

Query: 71  PGVRYHIVRGTLDAVGVKDRQQGRSSAL 99
           PGVRYHIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 110 PGVRYHIVRGTLDAVGVKDRQQGRSSAL 137

[Close]
BLAST of Clc11G07923 vs. ExPASy TrEMBL
Match: U5IPK6 (Ribosomal protein S12 OS=Metapanax delavayi OX=133946 GN=rps12 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 4.3e-28
Identity = 70/98 (71.43%), Postives = 74/98 (75.51%), Query Frame = 0 

Query: 7   FARIGNNEVTILVNDEEKASDIDPQE--------AQVRLISGFEITAYIPGIGHNLQEHS 66
           + RIG N    L N   K   I P++        A+VRL SGFEITAYIPGIGHN QEHS
Sbjct: 61  YRRIGYNRKRTLFNSVSKKKTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHS 120

Query: 67  VVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSS 97
           VVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSS
Sbjct: 121 VVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSS 158

[Close]
BLAST of Clc11G07923 vs. ExPASy TrEMBL
Match: A0A6A1W639 (30S ribosomal protein S12, chloroplastic OS=Morella rubra OX=262757 GN=CJ030_MR3G002923 PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.3e-27
Identity = 66/80 (82.50%), Postives = 70/80 (87.50%), Query Frame = 0 

Query: 19  VNDEEKASDIDPQEAQVRLISGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 78
           V   + + D +   A+VRL SGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV
Sbjct: 153 VRGYKSSLDRESPVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 212

Query: 79  RGTLDAVGVKDRQQGRSSAL 99
           RGTLDAVGVKDRQQGRSSAL
Sbjct: 213 RGTLDAVGVKDRQQGRSSAL 232

[Close]
BLAST of Clc11G07923 vs. ExPASy TrEMBL
Match: U5IQP1 (30S ribosomal protein S12, chloroplastic OS=Metapanax delavayi OX=133946 GN=rps12 PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.3e-27
Identity = 69/97 (71.13%), Postives = 73/97 (75.26%), Query Frame = 0 

Query: 7   FARIGNNEVTILVNDEEKASDIDPQE--------AQVRLISGFEITAYIPGIGHNLQEHS 66
           + RIG N    L N   K   I P++        A+VRL SGFEITAYIPGIGHN QEHS
Sbjct: 61  YRRIGYNRKRTLFNSVSKKKTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHS 120

Query: 67  VVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 96
           VVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Sbjct: 121 VVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 157

[Close]
BLAST of Clc11G07923 vs. ExPASy TrEMBL
Match: A0A7N2N888 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.3e-27
Identity = 69/92 (75.00%), Postives = 74/92 (80.43%), Query Frame = 0 

Query: 9   RIGNNEVTILVNDE--EKASDIDPQEAQVRLISGFEITAYIPGIGHNLQEHSVVLVRGGR 68
           R  N E     + E  E+  ++    A+VRL SGFEITAYIPGIGHNLQEHSVVLVRGGR
Sbjct: 22  RFSNEEKDPTTSKELNEEPYEVKISFARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGR 81

Query: 69  VKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 99
           VKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 82  VKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 113

[Close]
BLAST of Clc11G07923 vs. TAIR 10
Match: ATCG00065.1 (ribosomal protein S12A )

HSP 1 Score: 126.7 bits (317), Expect = 1.0e-29
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 0 

Query: 33  AQVRLISGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ 92
           A+VRL SGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ
Sbjct: 53  ARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ 112

Query: 93  GRS 96
           GRS
Sbjct: 113 GRS 115

[Close]
BLAST of Clc11G07923 vs. TAIR 10
Match: ATCG01230.1 (ribosomal protein S12B )

HSP 1 Score: 126.7 bits (317), Expect = 1.0e-29
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 0 

Query: 33  AQVRLISGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ 92
           A+VRL SGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ
Sbjct: 53  ARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ 112

Query: 93  GRS 96
           GRS
Sbjct: 113 GRS 115

[Close]
BLAST of Clc11G07923 vs. TAIR 10
Match: ATCG00905.1 (ribosomal protein S12C )

HSP 1 Score: 126.7 bits (317), Expect = 1.0e-29
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 0 

Query: 33  AQVRLISGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ 92
           A+VRL SGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ
Sbjct: 53  ARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ 112

Query: 93  GRS 96
           GRS
Sbjct: 113 GRS 115

[Close]
BLAST of Clc11G07923 vs. TAIR 10
Match: AT2G07675.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 81.6 bits (200), Expect = 3.7e-16
Identity = 37/63 (58.73%), Postives = 48/63 (76.19%), Query Frame = 0 

Query: 33  AQVRLISGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ 92
           A+VRL +  +I A+IPG GHN QEHS VL+RGGRVKD PGV+ H +RG  D +G+  R++
Sbjct: 53  AKVRLSNRHDIFAHIPGEGHNSQEHSTVLIRGGRVKDSPGVKSHCIRGVKDLMGIPGRRR 112

Query: 93  GRS 96
           GRS
Sbjct: 113 GRS 115

[Close]
BLAST of Clc11G07923 vs. TAIR 10
Match: ATMG00980.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 81.6 bits (200), Expect = 3.7e-16
Identity = 37/63 (58.73%), Postives = 48/63 (76.19%), Query Frame = 0 

Query: 33  AQVRLISGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ 92
           A+VRL +  +I A+IPG GHN QEHS VL+RGGRVKD PGV+ H +RG  D +G+  R++
Sbjct: 53  AKVRLSNRHDIFAHIPGEGHNSQEHSTVLIRGGRVKDSPGVKSHCIRGVKDLMGIPGRRR 112

Query: 93  GRS 96
           GRS
Sbjct: 113 GRS 115

The following BLAST results are available for this feature:
BLAST of Clc11G07923 vs. NCBI nr
Match NameE-valueIdentityDescription
QWW89705.18.9e-2877.27ribosomal protein S12 [Zamia fischeri] >QWW89706.1 ribosomal protein S12 [Zamia ... [more]
AEQ37137.18.9e-2877.27ribosomal protein S12 [Ginkgo biloba] >AEQ37174.1 ribosomal protein S12 [Ginkgo ... [more]
YP_008815054.18.9e-2871.43ribosomal protein S12 [Metapanax delavayi] >AGG39190.1 ribosomal protein S12 [Me... [more]
KAG6621065.12.0e-2777.27hypothetical protein I3842_Q037900, partial [Carya illinoinensis][more]
YP_008815009.12.6e-2771.13ribosomal protein S12 [Metapanax delavayi] >AGG39177.1 ribosomal protein S12 [Me... [more]
BLAST of Clc11G07923 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q1KXY02.9e-2995.4530S ribosomal protein S12, chloroplastic OS=Helianthus annuus OX=4232 GN=rps12-A... [more]
Q332V32.9e-2995.4530S ribosomal protein S12, chloroplastic OS=Lactuca sativa OX=4236 GN=rps12-A PE... [more]
Q0G9J52.9e-2995.4530S ribosomal protein S12, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=r... [more]
A4QJV51.4e-2896.8330S ribosomal protein S12-A, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN... [more]
A4QJX71.4e-2896.8330S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN... [more]
BLAST of Clc11G07923 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
I6N9H04.3e-2877.27Ribosomal protein S12 OS=Ginkgo biloba OX=3311 GN=rps12 PE=3 SV=1[more]
U5IPK64.3e-2871.43Ribosomal protein S12 OS=Metapanax delavayi OX=133946 GN=rps12 PE=3 SV=1[more]
A0A6A1W6391.3e-2782.5030S ribosomal protein S12, chloroplastic OS=Morella rubra OX=262757 GN=CJ030_MR3... [more]
U5IQP11.3e-2771.1330S ribosomal protein S12, chloroplastic OS=Metapanax delavayi OX=133946 GN=rps1... [more]
A0A7N2N8881.3e-2775.00Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1[more]
BLAST of Clc11G07923 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00065.11.0e-2996.83ribosomal protein S12A [more]
ATCG01230.11.0e-2996.83ribosomal protein S12B [more]
ATCG00905.11.0e-2996.83ribosomal protein S12C [more]
AT2G07675.13.7e-1658.73Ribosomal protein S12/S23 family protein [more]
ATMG00980.13.7e-1658.73Ribosomal protein S12/S23 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006032Ribosomal protein S12/S23PRINTSPR01034RIBOSOMALS12coord: 38..57
score: 72.29
coord: 74..90
score: 64.3
coord: 22..37
score: 29.51
coord: 57..74
score: 88.58
coord: 90..98
score: 32.37
IPR006032Ribosomal protein S12/S23PFAMPF00164Ribosom_S12_S23coord: 33..93
e-value: 1.4E-18
score: 66.5
IPR006032Ribosomal protein S12/S23PANTHERPTHR1165230S RIBOSOMAL PROTEIN S12 FAMILY MEMBERcoord: 33..97
NoneNo IPR availableGENE3D2.40.50.140coord: 29..97
e-value: 8.3E-33
score: 114.8
NoneNo IPR availablePANTHERPTHR11652:SF5230S RIBOSOMAL PROTEIN S12-Bcoord: 33..97
IPR005679Ribosomal protein S12, bacterial-typeTIGRFAMTIGR00981TIGR00981coord: 31..95
e-value: 2.8E-34
score: 115.7
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 33..95

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc11G07923.1Clc11G07923.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome