Clc11G07870 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G07870
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Photosystem I P700 chlorophyll a apoprotein A1
Location	ClcChr11: 7787471 .. 7788967 (-)
RNA-Seq Expression	Clc11G07870
Synteny	Clc11G07870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCGAAAGCCTGACGGAGCAATGCCGCGCTTTGCTAAGGAACGAAGCTTCGTGTTTGTTTTTCTTCAAACCCCCAATCCGCTCTCGCTCGCCGCTACTAACGGGGTCTCGGTTGATTTCCCTTCCTTTAGCTACTCAGATGTTTCAATTCGCTAAGTTTGAAAAGTCCAAAGAGCACAGACTAGCTGAACTCAAAAGTGTAAGCCTGATTAGTGAAGTCTTAAAAACTTCATAGAATTCAATGAATGATCAACCATTCCATTTGTGCTTGAAGCAAGTAGGCGACGCGAATCTATGGTTTCTATGTTTCAATGGGATACCAATTGCTTGGATGCCCTTGTTTGAAAGCCGGAAACCTGGAATAGTAGAAAGCAGCGGTAAGAGACCGATTGAACAGCTTTTCTTGGCTAGAATAGCTCTATTTGAACTAGTTGAAGCGGTAGTGGAAGGTACCGTTTTCCCTCAATCAGTTTGTTGGGAAGGCAGGAGTAGAATAGAAGACTAAAAGCATCGCGATCGAGTGACGTAGGTGCACAAGAGTACTTCGCGCCACAACCATCTCTTTTTTATAGGTTCTACGGACCGATGCCTGCTGCTTCATCTGGGAGAAAAGAATCATTGATATGCCGGTCATTAGAAGGAAGAACCTGATTTTCTTTTTCTTTCAAGGCACGATTCCTTACCAGTTATTCTGACGTCCTGTATGATTGCAGGGTTGTTCGGGAATCCCTTTGCAACTTCCTGGACGTTCATACATACTTTTTCTTTAGTCTTTCAATTACAATATAGTTTCTAATAATAAATAAAGGAAATGGAGAGCAAATTGAAGAAATGACCTTAAATCTTAGTGTCCTGACTCCGAATCGAATTATTTGGGATTCAGAAGTGAAAGAAATCATTTTAGTTACGAATAGTGGCCAAATTGGTGTATTACCAGATCACGCACCACTCGCCTTTTTCTCGGCTAAAGCTAGCTCTGTGATCTGCTTTCTTTGGAGATAACGGACGCAGGATATTCATTCTCATTCTCATTCTCATTCTCATTGGTGAGATTGAGAGTTTCTTGCTCCTTAATCACGGAGCAGCATACCGAAAAAAAAAAGGCCCTGTAGGTTCAAGTCACACTTTTAGCTTGCTATAAGCTGGGCTCAGGGACAGCAGTCAGCCGACGAAAAAAAGAATCGACCGTTTAAGTATTCAAAATTTTACTAAAAAAATATATATAAAGCGGTGCAAATATATATGTCTATATATCTATCTATATTGAATTATATTGAATTGCAGATACAGAAATGATAGAATCATTTTGGATCGGACCAAATACGGGTCTCTGATAATTGGTGCATTAGTCTTTGCAGCCTTAATGCTTTTTGCCGGTTGGTTTCATTATCACAAGGCTGCTCCTAAATTGGCTTGGTTCCAAGATGTCGAATCCATGTTGAATCACCATTTAGCGGGTCTGTTAGGACTTGGGCCGCCCAAAACCTGGAGCTAA

mRNA sequence

ATGGGCGAAAGCCTGACGGAGCAATGCCGCGCTTTGCTAAGGAACGAAGCTTCGTGTTTGTTTTTCTTCAAACCCCCAATCCGCTCTCGCTCGCCGCTACTAACGGGGTCTCGGTTGATTTCCCTTCCTTTAGCTACTCAGATGTTTCAATTCGCTAAGTTTGAAAAGTCCAAAGAGCACAGACTAGCTGAACTCAAAAGTCAAGTAGGCGACGCGAATCTATGGTTTCTATGTTTCAATGGGATACCAATTGCTTGGATGCCCTTGTTTGAAAGCCGGAAACCTGGAATAGTAGAAAGCAGCGGTAAGAGACCGATTGAACAGCTTTTCTTGGCTAGAATAGCTCTATTTGAACTAGTTGAAGCGGTAGTGGAAGGTGCACAAGAGTACTTCGCGCCACAACCATCTCTTTTTTATAGGTTCTACGGACCGATGCCTGCTGCTTCATCTGGGAGAAAAGAATCATTGATATGCCGATACAGAAATGATAGAATCATTTTGGATCGGACCAAATACGGGTCTCTGATAATTGGTGCATTAGTCTTTGCAGCCTTAATGCTTTTTGCCGGTTGGTTTCATTATCACAAGGCTGCTCCTAAATTGGCTTGGTTCCAAGATGTCGAATCCATGTTGAATCACCATTTAGCGGGTCTGTTAGGACTTGGGCCGCCCAAAACCTGGAGCTAA

Coding sequence (CDS)

ATGGGCGAAAGCCTGACGGAGCAATGCCGCGCTTTGCTAAGGAACGAAGCTTCGTGTTTGTTTTTCTTCAAACCCCCAATCCGCTCTCGCTCGCCGCTACTAACGGGGTCTCGGTTGATTTCCCTTCCTTTAGCTACTCAGATGTTTCAATTCGCTAAGTTTGAAAAGTCCAAAGAGCACAGACTAGCTGAACTCAAAAGTCAAGTAGGCGACGCGAATCTATGGTTTCTATGTTTCAATGGGATACCAATTGCTTGGATGCCCTTGTTTGAAAGCCGGAAACCTGGAATAGTAGAAAGCAGCGGTAAGAGACCGATTGAACAGCTTTTCTTGGCTAGAATAGCTCTATTTGAACTAGTTGAAGCGGTAGTGGAAGGTGCACAAGAGTACTTCGCGCCACAACCATCTCTTTTTTATAGGTTCTACGGACCGATGCCTGCTGCTTCATCTGGGAGAAAAGAATCATTGATATGCCGATACAGAAATGATAGAATCATTTTGGATCGGACCAAATACGGGTCTCTGATAATTGGTGCATTAGTCTTTGCAGCCTTAATGCTTTTTGCCGGTTGGTTTCATTATCACAAGGCTGCTCCTAAATTGGCTTGGTTCCAAGATGTCGAATCCATGTTGAATCACCATTTAGCGGGTCTGTTAGGACTTGGGCCGCCCAAAACCTGGAGCTAA

Protein sequence

MGESLTEQCRALLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATQMFQFAKFEKSKEHRLAELKSQVGDANLWFLCFNGIPIAWMPLFESRKPGIVESSGKRPIEQLFLARIALFELVEAVVEGAQEYFAPQPSLFYRFYGPMPAASSGRKESLICRYRNDRIILDRTKYGSLIIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGPPKTWS

Homology

[Close]

BLAST of Clc11G07870 vs. NCBI nr
Match: OIT00553.1 (putative mitochondrial protein, partial [Nicotiana attenuata])

HSP 1 Score: 107.1 bits (266), Expect = 2.1e-19
Identity = 61/95 (64.21%), Postives = 70/95 (73.68%), Query Frame = 0


Query: 7  EQCRALLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATQMFQFAKFEKSKEHRLA-EL 66
          ++   LLRN+ASCLFFFKPPIRSRSPLLTGSRLISLPLAT+MFQFAKFEKSKEHRLA EL
Sbjct: 6  KEVNTLLRNKASCLFFFKPPIRSRSPLLTGSRLISLPLATKMFQFAKFEKSKEHRLATEL 65

Query: 67 KSQVGDANLWFLCFNGI---PIAWMPLFESRKPGI 98
                 + W +  +GI   P A   +  S+ PGI
Sbjct: 66 GYGFPIGDPWII--DGISPWPFASESVLPSQCPGI 98

[Close]

BLAST of Clc11G07870 vs. NCBI nr
Match: OIT35639.1 (putative mitochondrial protein, partial [Nicotiana attenuata])

HSP 1 Score: 106.3 bits (264), Expect = 3.5e-19
Identity = 62/95 (65.26%), Postives = 68/95 (71.58%), Query Frame = 0


Query: 7  EQCRALLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATQMFQFAKFEKSKEHRLA-EL 66
          ++   LLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLAT+MFQFAKFEKSKE RLA EL
Sbjct: 6  KEVNTLLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATKMFQFAKFEKSKERRLATEL 65

Query: 67 KSQVGDANLWFLCFNGI---PIAWMPLFESRKPGI 98
                 + W    NGI   P A   +  S+ PGI
Sbjct: 66 GYGFPIGDPWIT--NGISPWPFASKNVLPSQCPGI 98

[Close]

BLAST of Clc11G07870 vs. NCBI nr
Match: YP_173374.1 (hypothetical protein NitaMp027 [Nicotiana tabacum] >YP_173501.1 hypothetical protein NitaMp164 [Nicotiana tabacum] >OIT02104.1 putative mitochondrial protein [Nicotiana attenuata] >OIT22081.1 putative mitochondrial protein [Nicotiana attenuata] >OIT29650.1 putative mitochondrial protein [Nicotiana attenuata] >OIT34301.1 putative mitochondrial protein [Nicotiana attenuata] >OIT34302.1 putative mitochondrial protein [Nicotiana attenuata])

HSP 1 Score: 104.4 bits (259), Expect = 1.3e-18
Identity = 61/95 (64.21%), Postives = 68/95 (71.58%), Query Frame = 0


Query: 7  EQCRALLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATQMFQFAKFEKSKEHRLA-EL 66
          ++   LLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLAT+MFQFAKFEKSKE RLA EL
Sbjct: 6  KEVNTLLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATKMFQFAKFEKSKERRLATEL 65

Query: 67 KSQVGDANLWFLCFNGI---PIAWMPLFESRKPGI 98
                 + W    +GI   P A   +  S+ PGI
Sbjct: 66 GYGFPIGDPWIT--DGISPWPFASESVLPSQCPGI 98

[Close]

BLAST of Clc11G07870 vs. NCBI nr
Match: OIT33719.1 (putative mitochondrial protein, partial [Nicotiana attenuata])

HSP 1 Score: 103.2 bits (256), Expect = 3.0e-18
Identity = 61/95 (64.21%), Postives = 68/95 (71.58%), Query Frame = 0


Query: 7  EQCRALLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATQMFQFAKFEKSKEHRLA-EL 66
          ++   LLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLAT+MFQFAKFEKSKE RLA EL
Sbjct: 5  KEVNTLLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATKMFQFAKFEKSKECRLATEL 64

Query: 67 KSQVGDANLWFLCFNGI---PIAWMPLFESRKPGI 98
                 + W    +GI   P A   +  S+ PGI
Sbjct: 65 GYGFPIGDPWIT--DGISPWPFASESVLPSQCPGI 97

[Close]

BLAST of Clc11G07870 vs. NCBI nr
Match: QVJ97967.1 (hypothetical protein [Apium graveolens])

HSP 1 Score: 102.8 bits (255), Expect = 3.9e-18
Identity = 61/95 (64.21%), Postives = 67/95 (70.53%), Query Frame = 0


Query: 7  EQCRALLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATQMFQFAKFEKSKEHRLA-EL 66
          ++   LLRNEASCLFFFKPPIRSRSPLLT SRLISLPLATQMFQFAKFEKSKE RLA EL
Sbjct: 6  KEVNTLLRNEASCLFFFKPPIRSRSPLLTESRLISLPLATQMFQFAKFEKSKERRLATEL 65

Query: 67 KSQVGDANLWFLCFNGI---PIAWMPLFESRKPGI 98
                 + W    +GI   P A   +  S+ PGI
Sbjct: 66 GYGFPIGDPWIT--DGISPWPFASESVLPSQCPGI 98

[Close]

BLAST of Clc11G07870 vs. ExPASy Swiss-Prot
Match: Q3V534 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Acorus calamus OX=4465 GN=psaA PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.4e-20
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 177 IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG 223
           IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG
Sbjct: 161 IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG 206

[Close]

BLAST of Clc11G07870 vs. ExPASy Swiss-Prot
Match: A4QJB5 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Aethionema cordifolium OX=434059 GN=psaA PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.4e-20
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 177 IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG 223
           IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG
Sbjct: 161 IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG 206

[Close]

BLAST of Clc11G07870 vs. ExPASy Swiss-Prot
Match: A4QJJ9 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Aethionema grandiflorum OX=72657 GN=psaA PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.4e-20
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 177 IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG 223
           IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG
Sbjct: 161 IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG 206

[Close]

BLAST of Clc11G07870 vs. ExPASy Swiss-Prot
Match: Q70Y03 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Amborella trichopoda OX=13333 GN=psaA PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.4e-20
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 177 IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG 223
           IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG
Sbjct: 161 IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG 206

[Close]

BLAST of Clc11G07870 vs. ExPASy Swiss-Prot
Match: A4QK18 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Arabis hirsuta OX=78191 GN=psaA PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.4e-20
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 177 IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG 223
           IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG
Sbjct: 161 IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG 206

[Close]

BLAST of Clc11G07870 vs. ExPASy TrEMBL
Match: A0A1J6IZR2 (Putative mitochondrial protein (Fragment) OS=Nicotiana attenuata OX=49451 GN=A4A49_59948 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.0e-19
Identity = 61/95 (64.21%), Postives = 70/95 (73.68%), Query Frame = 0


Query: 7  EQCRALLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATQMFQFAKFEKSKEHRLA-EL 66
          ++   LLRN+ASCLFFFKPPIRSRSPLLTGSRLISLPLAT+MFQFAKFEKSKEHRLA EL
Sbjct: 6  KEVNTLLRNKASCLFFFKPPIRSRSPLLTGSRLISLPLATKMFQFAKFEKSKEHRLATEL 65

Query: 67 KSQVGDANLWFLCFNGI---PIAWMPLFESRKPGI 98
                 + W +  +GI   P A   +  S+ PGI
Sbjct: 66 GYGFPIGDPWII--DGISPWPFASESVLPSQCPGI 98

[Close]

BLAST of Clc11G07870 vs. ExPASy TrEMBL
Match: A0A314L3P4 (Putative mitochondrial protein (Fragment) OS=Nicotiana attenuata OX=49451 GN=A4A49_57720 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.7e-19
Identity = 62/95 (65.26%), Postives = 68/95 (71.58%), Query Frame = 0


Query: 7  EQCRALLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATQMFQFAKFEKSKEHRLA-EL 66
          ++   LLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLAT+MFQFAKFEKSKE RLA EL
Sbjct: 6  KEVNTLLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATKMFQFAKFEKSKERRLATEL 65

Query: 67 KSQVGDANLWFLCFNGI---PIAWMPLFESRKPGI 98
                 + W    NGI   P A   +  S+ PGI
Sbjct: 66 GYGFPIGDPWIT--NGISPWPFASKNVLPSQCPGI 98

[Close]

BLAST of Clc11G07870 vs. ExPASy TrEMBL
Match: Q5M9R1 (Uncharacterized protein OS=Nicotiana tabacum OX=4097 GN=orf138c PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 6.5e-19
Identity = 61/95 (64.21%), Postives = 68/95 (71.58%), Query Frame = 0


Query: 7  EQCRALLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATQMFQFAKFEKSKEHRLA-EL 66
          ++   LLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLAT+MFQFAKFEKSKE RLA EL
Sbjct: 6  KEVNTLLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATKMFQFAKFEKSKERRLATEL 65

Query: 67 KSQVGDANLWFLCFNGI---PIAWMPLFESRKPGI 98
                 + W    +GI   P A   +  S+ PGI
Sbjct: 66 GYGFPIGDPWIT--DGISPWPFASESVLPSQCPGI 98

[Close]

BLAST of Clc11G07870 vs. ExPASy TrEMBL
Match: A0A1J6INJ4 (Putative mitochondrial protein OS=Nicotiana attenuata OX=49451 GN=A4A49_32027 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 6.5e-19
Identity = 61/95 (64.21%), Postives = 68/95 (71.58%), Query Frame = 0


Query: 7  EQCRALLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATQMFQFAKFEKSKEHRLA-EL 66
          ++   LLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLAT+MFQFAKFEKSKE RLA EL
Sbjct: 6  KEVNTLLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATKMFQFAKFEKSKERRLATEL 65

Query: 67 KSQVGDANLWFLCFNGI---PIAWMPLFESRKPGI 98
                 + W    +GI   P A   +  S+ PGI
Sbjct: 66 GYGFPIGDPWIT--DGISPWPFASESVLPSQCPGI 98

[Close]

BLAST of Clc11G07870 vs. ExPASy TrEMBL
Match: A0A314KY62 (Putative mitochondrial protein (Fragment) OS=Nicotiana attenuata OX=49451 GN=A4A49_61251 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.5e-18
Identity = 61/95 (64.21%), Postives = 68/95 (71.58%), Query Frame = 0


Query: 7  EQCRALLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATQMFQFAKFEKSKEHRLA-EL 66
          ++   LLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLAT+MFQFAKFEKSKE RLA EL
Sbjct: 5  KEVNTLLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATKMFQFAKFEKSKECRLATEL 64

Query: 67 KSQVGDANLWFLCFNGI---PIAWMPLFESRKPGI 98
                 + W    +GI   P A   +  S+ PGI
Sbjct: 65 GYGFPIGDPWIT--DGISPWPFASESVLPSQCPGI 97

[Close]

BLAST of Clc11G07870 vs. TAIR 10
Match: ATCG00350.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 99.8 bits (247), Expect = 3.1e-21
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 177 IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG 223
           IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG
Sbjct: 161 IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG 206

[Close]

BLAST of Clc11G07870 vs. TAIR 10
Match: ATCG00340.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 48.1 bits (113), Expect = 1.1e-05
Identity = 21/43 (48.84%), Postives = 29/43 (67.44%), Query Frame = 0


Query: 180 LVFAALMLFAGWFHYH-KAAPKLAWFQDVESMLNHHLAGLLGL 222
           L  +AL L  GW H   K  P+++WF++ ES LNHHL+GL G+
Sbjct: 143 LFLSALSLIGGWLHLQPKWKPRVSWFKNAESRLNHHLSGLFGV 185

The following BLAST results are available for this feature:

BLAST of Clc11G07870 vs. NCBI nr


Match Name	E-value	Identity	Description
OIT00553.1	2.1e-19	64.21	putative mitochondrial protein, partial [Nicotiana attenuata]	[more]
OIT35639.1	3.5e-19	65.26	putative mitochondrial protein, partial [Nicotiana attenuata]	[more]
YP_173374.1	1.3e-18	64.21	hypothetical protein NitaMp027 [Nicotiana tabacum] >YP_173501.1 hypothetical pro...	[more]
OIT33719.1	3.0e-18	64.21	putative mitochondrial protein, partial [Nicotiana attenuata]	[more]
QVJ97967.1	3.9e-18	64.21	hypothetical protein [Apium graveolens]	[more]

BLAST of Clc11G07870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3V534	4.4e-20	100.00	Photosystem I P700 chlorophyll a apoprotein A1 OS=Acorus calamus OX=4465 GN=psaA...	[more]
A4QJB5	4.4e-20	100.00	Photosystem I P700 chlorophyll a apoprotein A1 OS=Aethionema cordifolium OX=4340...	[more]
A4QJJ9	4.4e-20	100.00	Photosystem I P700 chlorophyll a apoprotein A1 OS=Aethionema grandiflorum OX=726...	[more]
Q70Y03	4.4e-20	100.00	Photosystem I P700 chlorophyll a apoprotein A1 OS=Amborella trichopoda OX=13333 ...	[more]
A4QK18	4.4e-20	100.00	Photosystem I P700 chlorophyll a apoprotein A1 OS=Arabis hirsuta OX=78191 GN=psa...	[more]

BLAST of Clc11G07870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1J6IZR2	1.0e-19	64.21	Putative mitochondrial protein (Fragment) OS=Nicotiana attenuata OX=49451 GN=A4A...	[more]
A0A314L3P4	1.7e-19	65.26	Putative mitochondrial protein (Fragment) OS=Nicotiana attenuata OX=49451 GN=A4A...	[more]
Q5M9R1	6.5e-19	64.21	Uncharacterized protein OS=Nicotiana tabacum OX=4097 GN=orf138c PE=4 SV=1	[more]
A0A1J6INJ4	6.5e-19	64.21	Putative mitochondrial protein OS=Nicotiana attenuata OX=49451 GN=A4A49_32027 PE...	[more]
A0A314KY62	1.5e-18	64.21	Putative mitochondrial protein (Fragment) OS=Nicotiana attenuata OX=49451 GN=A4A...	[more]

BLAST of Clc11G07870 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00350.1	3.1e-21	100.00	Photosystem I, PsaA/PsaB protein	[more]
ATCG00340.1	1.1e-05	48.84	Photosystem I, PsaA/PsaB protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001280	Photosystem I PsaA/PsaB	PRINTS	PR00257	PHOTSYSPSAAB	coord: 172..196 score: 49.76 coord: 211..228 score: 38.83
IPR001280	Photosystem I PsaA/PsaB	PFAM	PF00223	PsaA_PsaB	coord: 175..222 e-value: 1.9E-19 score: 69.4
IPR036408	Photosystem I PsaA/PsaB superfamily	GENE3D	1.20.1130.10	Photosystem I PsaA/PsaB	coord: 166..225 e-value: 9.0E-18 score: 65.3
IPR036408	Photosystem I PsaA/PsaB superfamily	SUPERFAMILY	81558	Photosystem I subunits PsaA/PsaB	coord: 175..222
IPR006243	Photosystem I PsaA	PANTHER	PTHR30128:SF60	PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A1	coord: 175..223
None	No IPR available	PANTHER	PTHR30128	OUTER MEMBRANE PROTEIN, OMPA-RELATED	coord: 175..223

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G07870.1	Clc11G07870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:0015979	photosynthesis
biological_process	GO:0018298	protein-chromophore linkage
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0042651	thylakoid membrane
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0046872	metal ion binding