Clc11G07810 (gene) Watermelon (cordophanus) v2

Overview
NameClc11G07810
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description50S ribosomal protein L23, chloroplastic
LocationClcChr11: 7769182 .. 7770174 (-)
RNA-Seq ExpressionClc11G07810
SyntenyClc11G07810
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGACCCTCCAATAAGTCTATTGGAATTGGCTCTGTATCGATGGAATCTCATCATCCATACATAACGAATTGGTGTGGTATATTCATATCATAACATATGAACAGTAAGAACTAGCATTCTTATTGAGACTCGAACTCATAGGGAAGAAAATTTATCGATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGGAAAAATCAATATACTTCTAATGTCGAATCAGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTTATCGACTCCCGGGAAAGGGTAGAAGAATGGGACCTATTATGGGACATACAATGCATTACAGACGGTCGATACTTCCACATATTACGGGTAACGTAGGAGACATCTCTATTTTTCCCCTTGGGAATCCTTAGAATTACCACTGCTTAGCTTTCAATTTGCCTCTGACCATCAAATGAAATGTGAATAACCCGTCCTGCTCTCTTTGAAACAAGGGACGGTAATTGAAAGACTAAAGAAAAAGTATGTATGAACGTCCAGGAAGTTGCAAAGGGATTCCCGAACAACCCTGCAATCATACAGGACGTCAGGATAACTGGTAAGGAATCGTGCCTTGAAAGAAAAAGAAAATCATTTGATCTTGATTTGAAAGTACTGCAACGATTGAGTCCGGTAGTAAGTACTATATGGTTCGGGGCGTTAGCGGGTCTATTAATCGAGATCAATCGTTTATTCCCGGATGCGTTGGTATTCCCATTTTTTTCATTCTAGTTATTGATTTGGGAAGGGGTGAAGAAGATTAGAAAAACAATCAAATATCTGCCGATGCCGAGCTACTAAAGGAGGTAGACCTTCGGTGTCACCTTGAGGGAAGCCCACCAAAGCGGGATTTCGGGCAGGGGTGGGGAAAAGGAGAAATGAGTTCATGCCCGCCGAATTCACATCAGAAATCGCCAACATAA

mRNA sequence

ATGGGACCCTCCAATAAGTCTATTGGAATTGGCTCTGTATCGATGGAATCTCATCATCCATACATAACGAATTGGTGTGTATTTACAGACAAAAGTATTCGGTTATTGGGGAAAAATCAATATACTTCTAATGTCGAATCAGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTTATCGACTCCCGGGAAAGGGTAGAAGAATGGGACCTATTATGGGACATACAATGCATTACAGACGGTCGATACTTCCACATATTACGGGTAACGAAGTTGCAAAGGGATTCCCGAACAACCCTGCAATCATACAGGACGTCAGGATAACTGGTAAGGAATCGTGCCTTGAAAGAAAAAGAAAATCATTTGATCTTGATTTGAAAGTACTGCAACGATTGAGTCCGGTAGTAAGTACTATATGGTTCGGGGCGTTAGCGGGTCTATTAATCGAGATCAATCGTTTATTCCCGGATGCGTTGAAAAACAATCAAATATCTGCCGATGCCGAGCTACTAAAGGAGGTAGACCTTCGGTGTCACCTTGAGGGAAGCCCACCAAAGCGGGATTTCGGGCAGGGGTGGGGAAAAGGAGAAATGAGTTCATGCCCGCCGAATTCACATCAGAAATCGCCAACATAA

Coding sequence (CDS)

ATGGGACCCTCCAATAAGTCTATTGGAATTGGCTCTGTATCGATGGAATCTCATCATCCATACATAACGAATTGGTGTGTATTTACAGACAAAAGTATTCGGTTATTGGGGAAAAATCAATATACTTCTAATGTCGAATCAGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTTATCGACTCCCGGGAAAGGGTAGAAGAATGGGACCTATTATGGGACATACAATGCATTACAGACGGTCGATACTTCCACATATTACGGGTAACGAAGTTGCAAAGGGATTCCCGAACAACCCTGCAATCATACAGGACGTCAGGATAACTGGTAAGGAATCGTGCCTTGAAAGAAAAAGAAAATCATTTGATCTTGATTTGAAAGTACTGCAACGATTGAGTCCGGTAGTAAGTACTATATGGTTCGGGGCGTTAGCGGGTCTATTAATCGAGATCAATCGTTTATTCCCGGATGCGTTGAAAAACAATCAAATATCTGCCGATGCCGAGCTACTAAAGGAGGTAGACCTTCGGTGTCACCTTGAGGGAAGCCCACCAAAGCGGGATTTCGGGCAGGGGTGGGGAAAAGGAGAAATGAGTTCATGCCCGCCGAATTCACATCAGAAATCGCCAACATAA

Protein sequence

MGPSNKSIGIGSVSMESHHPYITNWCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSYRLPGKGRRMGPIMGHTMHYRRSILPHITGNEVAKGFPNNPAIIQDVRITGKESCLERKRKSFDLDLKVLQRLSPVVSTIWFGALAGLLIEINRLFPDALKNNQISADAELLKEVDLRCHLEGSPPKRDFGQGWGKGEMSSCPPNSHQKSPT
Homology
[Close]
BLAST of Clc11G07810 vs. NCBI nr
Match: KAG6467610.1 (hypothetical protein ZIOFF_074559 [Zingiber officinale] >KAG6467621.1 hypothetical protein ZIOFF_074581 [Zingiber officinale])

HSP 1 Score: 174.5 bits (441), Expect = 1.0e-39
Identity = 87/115 (75.65%), Postives = 92/115 (80.00%), Query Frame = 0 

Query: 1   MGPSNKSIGIGSVSMESHHPYITNW-----------CVFTDKSIRLLGKNQYTSNVESGS 60
           MG  NKSIGIGSVSMESHHP ITNW            VFT+KSIRLLG NQYTSNVESGS
Sbjct: 1   MGTFNKSIGIGSVSMESHHPSITNWEENGFMDGIKYAVFTEKSIRLLGNNQYTSNVESGS 60

Query: 61  TRTEIKHWVELFFGVKVIAMNSYRLPGKGRRMGPIMGHTMHYRRSILPHITGNEV 105
           TRTEIKHWVELFFGVKVIAMNS+RLPGKGRR GPIMGHTMHYRR I+   +G  +
Sbjct: 61  TRTEIKHWVELFFGVKVIAMNSHRLPGKGRRRGPIMGHTMHYRRMIITLESGYSI 115

[Close]
BLAST of Clc11G07810 vs. NCBI nr
Match: YP_009433372.1 (ribosomal protein L23 [Zostera marina] >ATD85282.1 ribosomal protein L23 [Zostera marina])

HSP 1 Score: 155.6 bits (392), Expect = 5.0e-34
Identity = 84/132 (63.64%), Postives = 88/132 (66.67%), Query Frame = 0 

Query: 1   MGPSNKSIGIGSVSMESHHPYITNW----------------------------------C 60
           MG  NKSIGIGSV +ESHHPYITNW                                   
Sbjct: 1   MGTFNKSIGIGSVYIESHHPYITNWYGIFIHNIRTIRTRILIDTGTHREENGFMDGIKYA 60

Query: 61  VFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSYRLPGKGRRMGPIMG 97
           VFT+KSIRLL  NQYTSNVESGSTRTEIKHWVELFFGVKVIAMNS+RLP KGRRMGPIMG
Sbjct: 61  VFTEKSIRLLENNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPRKGRRMGPIMG 120

[Close]
BLAST of Clc11G07810 vs. NCBI nr
Match: YP_009433353.1 (ribosomal protein L23 [Zostera marina] >ATD85263.1 ribosomal protein L23 [Zostera marina])

HSP 1 Score: 155.6 bits (392), Expect = 5.0e-34
Identity = 84/132 (63.64%), Postives = 88/132 (66.67%), Query Frame = 0 

Query: 1   MGPSNKSIGIGSVSMESHHPYITNW----------------------------------C 60
           MG  NKSIGIGSV +ESHHPYITNW                                   
Sbjct: 16  MGTFNKSIGIGSVYIESHHPYITNWYGIFIHNIRTIRTRILIDTGTHREENGFMDGIKYA 75

Query: 61  VFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSYRLPGKGRRMGPIMG 97
           VFT+KSIRLL  NQYTSNVESGSTRTEIKHWVELFFGVKVIAMNS+RLP KGRRMGPIMG
Sbjct: 76  VFTEKSIRLLENNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPRKGRRMGPIMG 135

[Close]
BLAST of Clc11G07810 vs. NCBI nr
Match: QZQ52882.1 (ribosomal protein L23 [Zostera japonica] >QZQ52902.1 ribosomal protein L23 [Zostera japonica])

HSP 1 Score: 153.7 bits (387), Expect = 1.9e-33
Identity = 83/132 (62.88%), Postives = 88/132 (66.67%), Query Frame = 0 

Query: 1   MGPSNKSIGIGSVSMESHHPYITNW----------------------------------C 60
           MG  NKSIGIGSV +ESHHP+ITNW                                   
Sbjct: 16  MGTFNKSIGIGSVYIESHHPHITNWYGIFIHNIRTIRTIILIDTGTHREENGFMDGIKYA 75

Query: 61  VFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSYRLPGKGRRMGPIMG 97
           VFT+KSIRLL  NQYTSNVESGSTRTEIKHWVELFFGVKVIAMNS+RLP KGRRMGPIMG
Sbjct: 76  VFTEKSIRLLENNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPRKGRRMGPIMG 135

[Close]
BLAST of Clc11G07810 vs. NCBI nr
Match: KAF1855813.1 (hypothetical protein Lal_00045175 [Lupinus albus] >KAF1876768.1 hypothetical protein Lal_00044219 [Lupinus albus] >KAF1876790.1 hypothetical protein Lal_00043621 [Lupinus albus])

HSP 1 Score: 150.2 bits (378), Expect = 2.1e-32
Identity = 76/107 (71.03%), Postives = 78/107 (72.90%), Query Frame = 0 

Query: 15  MESHHPYITNWC-------------------------VFTDKSIRLLGKNQYTSNVESGS 74
           MESHHPYITNWC                         VFTDKSIRLL KNQYTSNVESGS
Sbjct: 1   MESHHPYITNWCVKTSSLIETRTHREENRFMNGIKYAVFTDKSIRLLVKNQYTSNVESGS 60

Query: 75  TRTEIKHWVELFFGVKVIAMNSYRLPGKGRRMGPIMGHTMHYRRSIL 97
           TRTEIKHWVELFFGVKVIAMNS+RLP KGRRM PIMGHTMHYRR I+
Sbjct: 61  TRTEIKHWVELFFGVKVIAMNSHRLPVKGRRMRPIMGHTMHYRRMII 107

[Close]
BLAST of Clc11G07810 vs. ExPASy Swiss-Prot
Match: Q4VZK6 (50S ribosomal protein L23, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.0e-33
Identity = 67/72 (93.06%), Postives = 70/72 (97.22%), Query Frame = 0 

Query: 25 WCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSYRLPGKGRRMGPI 84
          + VFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNS+RLPGKGRRMGPI
Sbjct: 6  YAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPI 65

Query: 85 MGHTMHYRRSIL 97
          MGHTMHYRR I+
Sbjct: 66 MGHTMHYRRMII 77

[Close]
BLAST of Clc11G07810 vs. ExPASy Swiss-Prot
Match: Q0ZIV5 (50S ribosomal protein L23, chloroplastic OS=Vitis vinifera OX=29760 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.0e-33
Identity = 67/72 (93.06%), Postives = 70/72 (97.22%), Query Frame = 0 

Query: 25 WCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSYRLPGKGRRMGPI 84
          + VFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNS+RLPGKGRRMGPI
Sbjct: 6  YAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPI 65

Query: 85 MGHTMHYRRSIL 97
          MGHTMHYRR I+
Sbjct: 66 MGHTMHYRRMII 77

[Close]
BLAST of Clc11G07810 vs. ExPASy Swiss-Prot
Match: Q06R67 (50S ribosomal protein L23, chloroplastic OS=Jasminum nudiflorum OX=126431 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 5.7e-33
Identity = 66/72 (91.67%), Postives = 70/72 (97.22%), Query Frame = 0 

Query: 25 WCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSYRLPGKGRRMGPI 84
          + VFT+KSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNS+RLPGKGRRMGPI
Sbjct: 6  YAVFTEKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPI 65

Query: 85 MGHTMHYRRSIL 97
          MGHTMHYRR I+
Sbjct: 66 MGHTMHYRRMII 77

[Close]
BLAST of Clc11G07810 vs. ExPASy Swiss-Prot
Match: Q0PUX7 (50S ribosomal protein L23, chloroplastic OS=Fragaria ananassa OX=3747 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 7.5e-33
Identity = 66/72 (91.67%), Postives = 69/72 (95.83%), Query Frame = 0 

Query: 25 WCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSYRLPGKGRRMGPI 84
          + VFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNS+RLPGKGRRMGP 
Sbjct: 6  YAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPT 65

Query: 85 MGHTMHYRRSIL 97
          MGHTMHYRR I+
Sbjct: 66 MGHTMHYRRMII 77

[Close]
BLAST of Clc11G07810 vs. ExPASy Swiss-Prot
Match: Q09FP7 (50S ribosomal protein L23, chloroplastic OS=Nandina domestica OX=41776 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 7.5e-33
Identity = 66/72 (91.67%), Postives = 69/72 (95.83%), Query Frame = 0 

Query: 25 WCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSYRLPGKGRRMGPI 84
          + VFTDKSIRLLG NQYTSNVESGSTRTEIKHWVELFFGVKVIAMNS+RLPGKGRRMGPI
Sbjct: 6  YAVFTDKSIRLLGNNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPI 65

Query: 85 MGHTMHYRRSIL 97
          MGHTMHYRR I+
Sbjct: 66 MGHTMHYRRMII 77

[Close]
BLAST of Clc11G07810 vs. ExPASy TrEMBL
Match: A0A290Y2L5 (50S ribosomal protein L23, chloroplastic OS=Zostera marina OX=29655 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 2.4e-34
Identity = 84/132 (63.64%), Postives = 88/132 (66.67%), Query Frame = 0 

Query: 1   MGPSNKSIGIGSVSMESHHPYITNW----------------------------------C 60
           MG  NKSIGIGSV +ESHHPYITNW                                   
Sbjct: 16  MGTFNKSIGIGSVYIESHHPYITNWYGIFIHNIRTIRTRILIDTGTHREENGFMDGIKYA 75

Query: 61  VFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSYRLPGKGRRMGPIMG 97
           VFT+KSIRLL  NQYTSNVESGSTRTEIKHWVELFFGVKVIAMNS+RLP KGRRMGPIMG
Sbjct: 76  VFTEKSIRLLENNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPRKGRRMGPIMG 135

[Close]
BLAST of Clc11G07810 vs. ExPASy TrEMBL
Match: A0A290Y2N1 (50S ribosomal protein L23, chloroplastic OS=Zostera marina OX=29655 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 2.4e-34
Identity = 84/132 (63.64%), Postives = 88/132 (66.67%), Query Frame = 0 

Query: 1   MGPSNKSIGIGSVSMESHHPYITNW----------------------------------C 60
           MG  NKSIGIGSV +ESHHPYITNW                                   
Sbjct: 1   MGTFNKSIGIGSVYIESHHPYITNWYGIFIHNIRTIRTRILIDTGTHREENGFMDGIKYA 60

Query: 61  VFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSYRLPGKGRRMGPIMG 97
           VFT+KSIRLL  NQYTSNVESGSTRTEIKHWVELFFGVKVIAMNS+RLP KGRRMGPIMG
Sbjct: 61  VFTEKSIRLLENNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPRKGRRMGPIMG 120

[Close]
BLAST of Clc11G07810 vs. ExPASy TrEMBL
Match: A0A6A5N094 (50S ribosomal protein L23, chloroplastic OS=Lupinus albus OX=3870 GN=Lal_00043621 PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.0e-32
Identity = 76/107 (71.03%), Postives = 78/107 (72.90%), Query Frame = 0 

Query: 15  MESHHPYITNWC-------------------------VFTDKSIRLLGKNQYTSNVESGS 74
           MESHHPYITNWC                         VFTDKSIRLL KNQYTSNVESGS
Sbjct: 1   MESHHPYITNWCVKTSSLIETRTHREENRFMNGIKYAVFTDKSIRLLVKNQYTSNVESGS 60

Query: 75  TRTEIKHWVELFFGVKVIAMNSYRLPGKGRRMGPIMGHTMHYRRSIL 97
           TRTEIKHWVELFFGVKVIAMNS+RLP KGRRM PIMGHTMHYRR I+
Sbjct: 61  TRTEIKHWVELFFGVKVIAMNSHRLPVKGRRMRPIMGHTMHYRRMII 107

[Close]
BLAST of Clc11G07810 vs. ExPASy TrEMBL
Match: A0A411L2K5 (50S ribosomal protein L23, chloroplastic OS=Microtea debilis OX=696524 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 4.3e-31
Identity = 68/80 (85.00%), Postives = 73/80 (91.25%), Query Frame = 0 

Query: 25  WCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSYRLPGKGRRMGPI 84
           + VFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNS+RLPGKGRRMGPI
Sbjct: 6   YAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPI 65

Query: 85  MGHTMHYRRSILPHITGNEV 105
           MGHTMHYRR I+   +G  +
Sbjct: 66  MGHTMHYRRMIITLQSGYSI 85

[Close]
BLAST of Clc11G07810 vs. ExPASy TrEMBL
Match: A0A411JSV4 (Ribosomal protein L23 (Fragment) OS=Microtea debilis OX=696524 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 4.3e-31
Identity = 68/80 (85.00%), Postives = 73/80 (91.25%), Query Frame = 0 

Query: 25  WCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSYRLPGKGRRMGPI 84
           + VFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNS+RLPGKGRRMGPI
Sbjct: 6   YAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPI 65

Query: 85  MGHTMHYRRSILPHITGNEV 105
           MGHTMHYRR I+   +G  +
Sbjct: 66  MGHTMHYRRMIITLQSGYSI 85

[Close]
BLAST of Clc11G07810 vs. TAIR 10
Match: ATCG00840.1 (ribosomal protein L23.1 )

HSP 1 Score: 136.0 bits (341), Expect = 3.8e-32
Identity = 63/72 (87.50%), Postives = 68/72 (94.44%), Query Frame = 0 

Query: 25 WCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSYRLPGKGRRMGPI 84
          + VFTDKSIRLLGKNQYT NVESGSTRTEIKHWVELFFGVKVIAMNS+RLPGK +RMGPI
Sbjct: 6  YAVFTDKSIRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKVKRMGPI 65

Query: 85 MGHTMHYRRSIL 97
          +GHTMHYRR I+
Sbjct: 66 LGHTMHYRRMII 77

[Close]
BLAST of Clc11G07810 vs. TAIR 10
Match: ATCG01300.1 (ribosomal protein L23 )

HSP 1 Score: 136.0 bits (341), Expect = 3.8e-32
Identity = 63/72 (87.50%), Postives = 68/72 (94.44%), Query Frame = 0 

Query: 25 WCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSYRLPGKGRRMGPI 84
          + VFTDKSIRLLGKNQYT NVESGSTRTEIKHWVELFFGVKVIAMNS+RLPGK +RMGPI
Sbjct: 6  YAVFTDKSIRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKVKRMGPI 65

Query: 85 MGHTMHYRRSIL 97
          +GHTMHYRR I+
Sbjct: 66 LGHTMHYRRMII 77

[Close]
BLAST of Clc11G07810 vs. TAIR 10
Match: ATCG00630.1 (PSAJ )

HSP 1 Score: 57.4 bits (137), Expect = 1.7e-08
Identity = 26/35 (74.29%), Postives = 31/35 (88.57%), Query Frame = 0 

Query: 137 DLKVLQRLSPVVSTIWFGALAGLLIEINRLFPDAL 172
           DLK    ++PV+ST+WFG+LAGLLIEINRLFPDAL
Sbjct: 3   DLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDAL 37

The following BLAST results are available for this feature:
BLAST of Clc11G07810 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6467610.11.0e-3975.65hypothetical protein ZIOFF_074559 [Zingiber officinale] >KAG6467621.1 hypothetic... [more]
YP_009433372.15.0e-3463.64ribosomal protein L23 [Zostera marina] >ATD85282.1 ribosomal protein L23 [Zoster... [more]
YP_009433353.15.0e-3463.64ribosomal protein L23 [Zostera marina] >ATD85263.1 ribosomal protein L23 [Zoster... [more]
QZQ52882.11.9e-3362.88ribosomal protein L23 [Zostera japonica] >QZQ52902.1 ribosomal protein L23 [Zost... [more]
KAF1855813.12.1e-3271.03hypothetical protein Lal_00045175 [Lupinus albus] >KAF1876768.1 hypothetical pro... [more]
BLAST of Clc11G07810 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q4VZK62.0e-3393.0650S ribosomal protein L23, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl23-A P... [more]
Q0ZIV52.0e-3393.0650S ribosomal protein L23, chloroplastic OS=Vitis vinifera OX=29760 GN=rpl23-A P... [more]
Q06R675.7e-3391.6750S ribosomal protein L23, chloroplastic OS=Jasminum nudiflorum OX=126431 GN=rpl... [more]
Q0PUX77.5e-3391.6750S ribosomal protein L23, chloroplastic OS=Fragaria ananassa OX=3747 GN=rpl23 P... [more]
Q09FP77.5e-3391.6750S ribosomal protein L23, chloroplastic OS=Nandina domestica OX=41776 GN=rpl23-... [more]
BLAST of Clc11G07810 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A290Y2L52.4e-3463.6450S ribosomal protein L23, chloroplastic OS=Zostera marina OX=29655 GN=rpl23 PE=... [more]
A0A290Y2N12.4e-3463.6450S ribosomal protein L23, chloroplastic OS=Zostera marina OX=29655 GN=rpl23 PE=... [more]
A0A6A5N0941.0e-3271.0350S ribosomal protein L23, chloroplastic OS=Lupinus albus OX=3870 GN=Lal_0004362... [more]
A0A411L2K54.3e-3185.0050S ribosomal protein L23, chloroplastic OS=Microtea debilis OX=696524 GN=rpl23 ... [more]
A0A411JSV44.3e-3185.00Ribosomal protein L23 (Fragment) OS=Microtea debilis OX=696524 GN=rpl23 PE=3 SV=... [more]
BLAST of Clc11G07810 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00840.13.8e-3287.50ribosomal protein L23.1 [more]
ATCG01300.13.8e-3287.50ribosomal protein L23 [more]
ATCG00630.11.7e-0874.29PSAJ [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002615Photosystem I PsaJ, reaction centre subunit IXPFAMPF01701PSI_PsaJcoord: 144..171
e-value: 1.2E-11
score: 44.8
IPR002615Photosystem I PsaJ, reaction centre subunit IXHAMAPMF_00522PSI_PsaJcoord: 135..175
score: 12.055454
NoneNo IPR availableGENE3D1.20.5.510Single helix bincoord: 146..170
e-value: 2.8E-16
score: 61.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 194..223
NoneNo IPR availablePANTHERPTHR11620:SF6950S RIBOSOMAL PROTEIN L23, CHLOROPLASTICcoord: 25..111
IPR013025Ribosomal protein L25/L23PFAMPF00276Ribosomal_L23coord: 27..95
e-value: 1.5E-12
score: 47.6
IPR013025Ribosomal protein L25/L23PANTHERPTHR1162060S RIBOSOMAL PROTEIN L23Acoord: 25..111
IPR013025Ribosomal protein L25/L23HAMAPMF_01369_BRibosomal_L23_Bcoord: 20..110
score: 14.233107
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 21..101
e-value: 3.7E-14
score: 54.8
IPR012678Ribosomal protein L23/L15e core domain superfamilySUPERFAMILY54189Ribosomal proteins S24e, L23 and L15ecoord: 27..95
IPR036062Photosystem I PsaJ, reaction centre subunit IX superfamilySUPERFAMILY81544Subunit IX of photosystem I reaction centre, PsaJcoord: 144..172

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc11G07810.2Clc11G07810.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0009522 photosystem I
cellular_component GO:0005840 ribosome
molecular_function GO:0003729 mRNA binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome