Clc11G07800 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G07800
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	DNA-directed RNA polymerase subunit beta''
Location	ClcChr11: 7767901 .. 7768677 (+)
RNA-Seq Expression	Clc11G07800
Synteny	Clc11G07800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGTACTTATGGCAGAACGGGCCAATCTGGTCTTTCACAATAAAGTGATAGATGGAACTGCCATTAAACGACTTATTAGCAGATTAATATATCACTTCGGAATGGCATATACATCACACATCCTGGATCAACTAAAGACTCTGGGGTTCCAGCAGGCCACTGCTACATCCATTTCATTAGGAATTGATGATCTTTTAACAATCCCTTCTAAGGGATGGCTAGTCCAAGATGCTGAACAACAAAGTTTGATTTTGGAAAAACACCATCATTATGGAAACGTACACGCAGTAGAAAAATTACGCCAGTCCATTGAGATATGGTATGCTACAAGTGAATATTTGCGACAAGAAATGAATCCTAATTTTAGGATGACCGACCCTTTTAATCCAGTCCATATAATGTCTTTTTCGGGAGCTCGAGGAAATGCATCTCAAGTACACCAATTAGTAGGTATGAGAGGATTAATGTCAGATCCACAAGGACAAATGATTGATTTACCCATTCAAAGCAATTTACGTGAGGGGCTGTCCTTAACGGAATATATAATTTCTTGCTACGGAGCGCGGAAAGGAGTTGTGGATACTGCTGTACGAACATCCGATGCTAGATATCTTACACGCAGACTTGTTGAAGTAGTTCAACACATTGTTGTACGTAGAACTGATTGTGGAACCATCCGAGGGATTTCAGTGAGTCCTGGAAATAGGATGATTCCGGAAAGAATTTTTATCCAAACATTAATTGGTCGTGTATTAGCGGACGATATAAAATAA

mRNA sequence

ATGGAGGTACTTATGGCAGAACGGGCCAATCTGGTCTTTCACAATAAAGTGATAGATGGAACTGCCATTAAACGACTTATTAGCAGATTAATATATCACTTCGGAATGGCATATACATCACACATCCTGGATCAACTAAAGACTCTGGGGTTCCAGCAGGCCACTGCTACATCCATTTCATTAGGAATTGATGATCTTTTAACAATCCCTTCTAAGGGATGGCTAGTCCAAGATGCTGAACAACAAAGTTTGATTTTGGAAAAACACCATCATTATGGAAACGTACACGCAGTAGAAAAATTACGCCAGTCCATTGAGATATGGTATGCTACAAGTGAATATTTGCGACAAGAAATGAATCCTAATTTTAGGATGACCGACCCTTTTAATCCAGTCCATATAATGTCTTTTTCGGGAGCTCGAGGAAATGCATCTCAAGTACACCAATTAGTAGGTATGAGAGGATTAATGTCAGATCCACAAGGACAAATGATTGATTTACCCATTCAAAGCAATTTACGTGAGGGGCTGTCCTTAACGGAATATATAATTTCTTGCTACGGAGCGCGGAAAGGAGTTGTGGATACTGCTGTACGAACATCCGATGCTAGATATCTTACACGCAGACTTGTTGAAGTAGTTCAACACATTGTTGTACGTAGAACTGATTGTGGAACCATCCGAGGGATTTCAGTGAGTCCTGGAAATAGGATGATTCCGGAAAGAATTTTTATCCAAACATTAATTGGTCGTGTATTAGCGGACGATATAAAATAA

Coding sequence (CDS)

ATGGAGGTACTTATGGCAGAACGGGCCAATCTGGTCTTTCACAATAAAGTGATAGATGGAACTGCCATTAAACGACTTATTAGCAGATTAATATATCACTTCGGAATGGCATATACATCACACATCCTGGATCAACTAAAGACTCTGGGGTTCCAGCAGGCCACTGCTACATCCATTTCATTAGGAATTGATGATCTTTTAACAATCCCTTCTAAGGGATGGCTAGTCCAAGATGCTGAACAACAAAGTTTGATTTTGGAAAAACACCATCATTATGGAAACGTACACGCAGTAGAAAAATTACGCCAGTCCATTGAGATATGGTATGCTACAAGTGAATATTTGCGACAAGAAATGAATCCTAATTTTAGGATGACCGACCCTTTTAATCCAGTCCATATAATGTCTTTTTCGGGAGCTCGAGGAAATGCATCTCAAGTACACCAATTAGTAGGTATGAGAGGATTAATGTCAGATCCACAAGGACAAATGATTGATTTACCCATTCAAAGCAATTTACGTGAGGGGCTGTCCTTAACGGAATATATAATTTCTTGCTACGGAGCGCGGAAAGGAGTTGTGGATACTGCTGTACGAACATCCGATGCTAGATATCTTACACGCAGACTTGTTGAAGTAGTTCAACACATTGTTGTACGTAGAACTGATTGTGGAACCATCCGAGGGATTTCAGTGAGTCCTGGAAATAGGATGATTCCGGAAAGAATTTTTATCCAAACATTAATTGGTCGTGTATTAGCGGACGATATAAAATAA

Protein sequence

MEVLMAERANLVFHNKVIDGTAIKRLISRLIYHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDARYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADDIK

Homology

[Close]

BLAST of Clc11G07800 vs. NCBI nr
Match: APW82621.1 (RNA polymerase beta'' subunit [Citrullus lanatus subsp. vulgaris])

HSP 1 Score: 501.9 bits (1291), Expect = 3.3e-138
Identity = 254/257 (98.83%), Postives = 255/257 (99.22%), Query Frame = 0


Query: 1   MEVLMAERANLVFHNKVIDGTAIKRLISRLIYHFGMAYTSHILDQLKTLGFQQATATSIS 60
           MEVLMAERA+LVFHNKVIDGTAIKRLISRLI HFGMAYTSHILDQLKTLGFQQATATSIS
Sbjct: 1   MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS 60

Query: 61  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
           LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120

Query: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
           PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180

Query: 181 EYIISCYGARKGVVDTAVRTSDARYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIP 240
           EYIISCYGARKGVVDTAVRTSDA YLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIP 240

Query: 241 ERIFIQTLIGRVLADDI 258
           ERIFIQTLIGRVLADDI
Sbjct: 241 ERIFIQTLIGRVLADDI 257

[Close]

BLAST of Clc11G07800 vs. NCBI nr
Match: YP_009431632.1 (RNA polymerase beta'' subunit [Citrullus rehmii] >ASY96233.1 RNA polymerase beta'' subunit [Citrullus rehmii])

HSP 1 Score: 501.9 bits (1291), Expect = 3.3e-138
Identity = 254/257 (98.83%), Postives = 255/257 (99.22%), Query Frame = 0


Query: 1   MEVLMAERANLVFHNKVIDGTAIKRLISRLIYHFGMAYTSHILDQLKTLGFQQATATSIS 60
           MEVLMAERA+LVFHNKVIDGTAIKRLISRLI HFGMAYTSHILDQLKTLGFQQATATSIS
Sbjct: 1   MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS 60

Query: 61  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
           LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120

Query: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
           PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180

Query: 181 EYIISCYGARKGVVDTAVRTSDARYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIP 240
           EYIISCYGARKGVVDTAVRTSDA YLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIP 240

Query: 241 ERIFIQTLIGRVLADDI 258
           ERIFIQTLIGRVLADDI
Sbjct: 241 ERIFIQTLIGRVLADDI 257

[Close]

BLAST of Clc11G07800 vs. NCBI nr
Match: YP_009420784.1 (RNA polymerase beta'' subunit [Citrullus colocynthis] >ASP44453.1 RNA polymerase beta'' subunit [Citrullus colocynthis])

HSP 1 Score: 501.9 bits (1291), Expect = 3.3e-138
Identity = 254/257 (98.83%), Postives = 255/257 (99.22%), Query Frame = 0


Query: 1   MEVLMAERANLVFHNKVIDGTAIKRLISRLIYHFGMAYTSHILDQLKTLGFQQATATSIS 60
           MEVLMAERA+LVFHNKVIDGTAIKRLISRLI HFGMAYTSHILDQLKTLGFQQATATSIS
Sbjct: 1   MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS 60

Query: 61  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
           LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120

Query: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
           PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180

Query: 181 EYIISCYGARKGVVDTAVRTSDARYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIP 240
           EYIISCYGARKGVVDTAVRTSDA YLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIP 240

Query: 241 ERIFIQTLIGRVLADDI 258
           ERIFIQTLIGRVLADDI
Sbjct: 241 ERIFIQTLIGRVLADDI 257

[Close]

BLAST of Clc11G07800 vs. NCBI nr
Match: YP_009431547.1 (RNA polymerase beta'' subunit [Citrullus amarus] >APW82536.1 RNA polymerase beta'' subunit [Citrullus lanatus subsp. vulgaris] >ASY96148.1 RNA polymerase beta'' subunit [Citrullus amarus])

HSP 1 Score: 501.9 bits (1291), Expect = 3.3e-138
Identity = 254/257 (98.83%), Postives = 255/257 (99.22%), Query Frame = 0


Query: 1   MEVLMAERANLVFHNKVIDGTAIKRLISRLIYHFGMAYTSHILDQLKTLGFQQATATSIS 60
           MEVLMAERA+LVFHNKVIDGTAIKRLISRLI HFGMAYTSHILDQLKTLGFQQATATSIS
Sbjct: 1   MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS 60

Query: 61  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
           LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120

Query: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
           PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180

Query: 181 EYIISCYGARKGVVDTAVRTSDARYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIP 240
           EYIISCYGARKGVVDTAVRTSDA YLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIP 240

Query: 241 ERIFIQTLIGRVLADDI 258
           ERIFIQTLIGRVLADDI
Sbjct: 241 ERIFIQTLIGRVLADDI 257

[Close]

BLAST of Clc11G07800 vs. NCBI nr
Match: APW82451.1 (RNA polymerase beta'' subunit [Citrullus lanatus subsp. vulgaris])

HSP 1 Score: 501.9 bits (1291), Expect = 3.3e-138
Identity = 254/257 (98.83%), Postives = 255/257 (99.22%), Query Frame = 0


Query: 1   MEVLMAERANLVFHNKVIDGTAIKRLISRLIYHFGMAYTSHILDQLKTLGFQQATATSIS 60
           MEVLMAERA+LVFHNKVIDGTAIKRLISRLI HFGMAYTSHILDQLKTLGFQQATATSIS
Sbjct: 1   MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS 60

Query: 61  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
           LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120

Query: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
           PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180

Query: 181 EYIISCYGARKGVVDTAVRTSDARYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIP 240
           EYIISCYGARKGVVDTAVRTSDA YLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIP 240

Query: 241 ERIFIQTLIGRVLADDI 258
           ERIFIQTLIGRVLADDI
Sbjct: 241 ERIFIQTLIGRVLADDI 257

[Close]

BLAST of Clc11G07800 vs. ExPASy Swiss-Prot
Match: Q4VZP3 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 499.6 bits (1285), Expect = 2.1e-140
Identity = 253/257 (98.44%), Postives = 254/257 (98.83%), Query Frame = 0


Query: 1   MEVLMAERANLVFHNKVIDGTAIKRLISRLIYHFGMAYTSHILDQLKTLGFQQATATSIS 60
           MEVLMAERA+LVFHNKVIDGTAIKRLISRLI HFGMAYTSHILDQLKTLGFQQATATSIS
Sbjct: 1   MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS 60

Query: 61  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
           LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120

Query: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
           PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180

Query: 181 EYIISCYGARKGVVDTAVRTSDARYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIP 240
           EYIISCYGARKGVVDTAVRTSDA YLTRRLVEVVQHIVVRRTDCGTIRGI VSPGNRMIP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIP 240

Query: 241 ERIFIQTLIGRVLADDI 258
           ERIFIQTLIGRVLADDI
Sbjct: 241 ERIFIQTLIGRVLADDI 257

[Close]

BLAST of Clc11G07800 vs. ExPASy Swiss-Prot
Match: Q49L08 (DNA-directed RNA polymerase subunit beta'' OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 493.4 bits (1269), Expect = 1.5e-138
Identity = 248/257 (96.50%), Postives = 252/257 (98.05%), Query Frame = 0


Query: 1   MEVLMAERANLVFHNKVIDGTAIKRLISRLIYHFGMAYTSHILDQLKTLGFQQATATSIS 60
           MEVLMAER NLVFHNKVIDGTAIKRLISRLI HFGMAYTSHILDQ+KTLGFQQATATSIS
Sbjct: 1   MEVLMAERVNLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 60

Query: 61  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
           LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIE+WYATSEYLRQEMN
Sbjct: 61  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMN 120

Query: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
           PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180

Query: 181 EYIISCYGARKGVVDTAVRTSDARYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIP 240
           EYIISCYGARKGVVDTAVRTSDA YLTRRLVEVVQHIVVRRTDCGTIRG+SVSP N M+P
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGVSVSPRNGMMP 240

Query: 241 ERIFIQTLIGRVLADDI 258
           ERIFIQTLIGRVLADDI
Sbjct: 241 ERIFIQTLIGRVLADDI 257

[Close]

BLAST of Clc11G07800 vs. ExPASy Swiss-Prot
Match: Q33C48 (DNA-directed RNA polymerase subunit beta'' OS=Nicotiana tomentosiformis OX=4098 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 489.6 bits (1259), Expect = 2.2e-137
Identity = 247/257 (96.11%), Postives = 250/257 (97.28%), Query Frame = 0


Query: 1   MEVLMAERANLVFHNKVIDGTAIKRLISRLIYHFGMAYTSHILDQLKTLGFQQATATSIS 60
           MEVLMAERANLVFHNK IDGTA+KRLISRLI HFGMAYTSHILDQ+KTLGFQQATATSIS
Sbjct: 1   MEVLMAERANLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 60

Query: 61  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
           LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120

Query: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
           PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180

Query: 181 EYIISCYGARKGVVDTAVRTSDARYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIP 240
           EYIISCYGARKGVVDTAVRTSDA YLTRRLVEVVQHIVVRRTDCGT RGISVSP N M+P
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTARGISVSPRNGMMP 240

Query: 241 ERIFIQTLIGRVLADDI 258
           ER FIQTLIGRVLADDI
Sbjct: 241 ERFFIQTLIGRVLADDI 257

[Close]

BLAST of Clc11G07800 vs. ExPASy Swiss-Prot
Match: Q8S8Y1 (DNA-directed RNA polymerase subunit beta'' OS=Atropa belladonna OX=33113 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 489.2 bits (1258), Expect = 2.9e-137
Identity = 247/257 (96.11%), Postives = 250/257 (97.28%), Query Frame = 0


Query: 1   MEVLMAERANLVFHNKVIDGTAIKRLISRLIYHFGMAYTSHILDQLKTLGFQQATATSIS 60
           MEVLMAERANLVFHNK IDGTA+KRLISRLI HFGMAYTSHILDQ+KTLGFQQATATSIS
Sbjct: 1   MEVLMAERANLVFHNKAIDGTAMKRLISRLIEHFGMAYTSHILDQVKTLGFQQATATSIS 60

Query: 61  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
           LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120

Query: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
           PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180

Query: 181 EYIISCYGARKGVVDTAVRTSDARYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIP 240
           EYIISCYGARKGVVDTAVRTSDA YLTRRLVEVVQHIVVRRTDCGT RGISVSP N M+P
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTARGISVSPRNGMMP 240

Query: 241 ERIFIQTLIGRVLADDI 258
           ERIF QTLIGRVLADDI
Sbjct: 241 ERIFSQTLIGRVLADDI 257

[Close]

BLAST of Clc11G07800 vs. ExPASy Swiss-Prot
Match: Q3C1G9 (DNA-directed RNA polymerase subunit beta'' OS=Nicotiana sylvestris OX=4096 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 489.2 bits (1258), Expect = 2.9e-137
Identity = 247/257 (96.11%), Postives = 251/257 (97.67%), Query Frame = 0


Query: 1   MEVLMAERANLVFHNKVIDGTAIKRLISRLIYHFGMAYTSHILDQLKTLGFQQATATSIS 60
           MEVLMAERANLVFHNK I+GTA+KRLISRLI HFGMAYTSHILDQ+KTLGFQQATATSIS
Sbjct: 1   MEVLMAERANLVFHNKAINGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 60

Query: 61  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
           LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120

Query: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
           PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180

Query: 181 EYIISCYGARKGVVDTAVRTSDARYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIP 240
           EYIISCYGARKGVVDTAVRTSDA YLTRRLVEVVQHIVVRRTDCGT RGISVSP N M+P
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTARGISVSPRNGMMP 240

Query: 241 ERIFIQTLIGRVLADDI 258
           ERIFIQTLIGRVLADDI
Sbjct: 241 ERIFIQTLIGRVLADDI 257

[Close]

BLAST of Clc11G07800 vs. ExPASy TrEMBL
Match: A0A1P8LFL6 (DNA-directed RNA polymerase OS=Citrullus mucosospermus OX=519315 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 501.9 bits (1291), Expect = 1.6e-138
Identity = 254/257 (98.83%), Postives = 255/257 (99.22%), Query Frame = 0


Query: 1   MEVLMAERANLVFHNKVIDGTAIKRLISRLIYHFGMAYTSHILDQLKTLGFQQATATSIS 60
           MEVLMAERA+LVFHNKVIDGTAIKRLISRLI HFGMAYTSHILDQLKTLGFQQATATSIS
Sbjct: 1   MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS 60

Query: 61  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
           LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120

Query: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
           PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180

Query: 181 EYIISCYGARKGVVDTAVRTSDARYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIP 240
           EYIISCYGARKGVVDTAVRTSDA YLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIP 240

Query: 241 ERIFIQTLIGRVLADDI 258
           ERIFIQTLIGRVLADDI
Sbjct: 241 ERIFIQTLIGRVLADDI 257

[Close]

BLAST of Clc11G07800 vs. ExPASy TrEMBL
Match: A0A1P8LF52 (DNA-directed RNA polymerase OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 501.9 bits (1291), Expect = 1.6e-138
Identity = 254/257 (98.83%), Postives = 255/257 (99.22%), Query Frame = 0


Query: 1   MEVLMAERANLVFHNKVIDGTAIKRLISRLIYHFGMAYTSHILDQLKTLGFQQATATSIS 60
           MEVLMAERA+LVFHNKVIDGTAIKRLISRLI HFGMAYTSHILDQLKTLGFQQATATSIS
Sbjct: 1   MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS 60

Query: 61  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
           LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120

Query: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
           PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180

Query: 181 EYIISCYGARKGVVDTAVRTSDARYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIP 240
           EYIISCYGARKGVVDTAVRTSDA YLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIP 240

Query: 241 ERIFIQTLIGRVLADDI 258
           ERIFIQTLIGRVLADDI
Sbjct: 241 ERIFIQTLIGRVLADDI 257

[Close]

BLAST of Clc11G07800 vs. ExPASy TrEMBL
Match: A0A7T3QNJ7 (RNA polymerase beta'' subunit OS=Benincasa hispida OX=102211 GN=rpoC2 PE=4 SV=1)

HSP 1 Score: 501.9 bits (1291), Expect = 1.6e-138
Identity = 254/257 (98.83%), Postives = 255/257 (99.22%), Query Frame = 0


Query: 1   MEVLMAERANLVFHNKVIDGTAIKRLISRLIYHFGMAYTSHILDQLKTLGFQQATATSIS 60
           MEVLMAERA+LVFHNKVIDGTAIKRLISRLI HFGMAYTSHILDQLKTLGFQQATATSIS
Sbjct: 43  MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS 102

Query: 61  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
           LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 103 LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 162

Query: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
           PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 163 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 222

Query: 181 EYIISCYGARKGVVDTAVRTSDARYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIP 240
           EYIISCYGARKGVVDTAVRTSDA YLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIP
Sbjct: 223 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIP 282

Query: 241 ERIFIQTLIGRVLADDI 258
           ERIFIQTLIGRVLADDI
Sbjct: 283 ERIFIQTLIGRVLADDI 299

[Close]

BLAST of Clc11G07800 vs. ExPASy TrEMBL
Match: A0A343A8A0 (DNA-directed RNA polymerase subunit beta'' OS=Citrullus lanatus OX=3654 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 501.9 bits (1291), Expect = 1.6e-138
Identity = 254/257 (98.83%), Postives = 255/257 (99.22%), Query Frame = 0


Query: 1   MEVLMAERANLVFHNKVIDGTAIKRLISRLIYHFGMAYTSHILDQLKTLGFQQATATSIS 60
           MEVLMAERA+LVFHNKVIDGTAIKRLISRLI HFGMAYTSHILDQLKTLGFQQATATSIS
Sbjct: 1   MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS 60

Query: 61  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
           LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120

Query: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
           PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180

Query: 181 EYIISCYGARKGVVDTAVRTSDARYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIP 240
           EYIISCYGARKGVVDTAVRTSDA YLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIP 240

Query: 241 ERIFIQTLIGRVLADDI 258
           ERIFIQTLIGRVLADDI
Sbjct: 241 ERIFIQTLIGRVLADDI 257

[Close]

BLAST of Clc11G07800 vs. ExPASy TrEMBL
Match: A0A249RX89 (DNA-directed RNA polymerase subunit beta'' OS=Citrullus rehmii OX=260675 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 501.9 bits (1291), Expect = 1.6e-138
Identity = 254/257 (98.83%), Postives = 255/257 (99.22%), Query Frame = 0


Query: 1   MEVLMAERANLVFHNKVIDGTAIKRLISRLIYHFGMAYTSHILDQLKTLGFQQATATSIS 60
           MEVLMAERA+LVFHNKVIDGTAIKRLISRLI HFGMAYTSHILDQLKTLGFQQATATSIS
Sbjct: 1   MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS 60

Query: 61  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
           LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120

Query: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
           PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180

Query: 181 EYIISCYGARKGVVDTAVRTSDARYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIP 240
           EYIISCYGARKGVVDTAVRTSDA YLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIP 240

Query: 241 ERIFIQTLIGRVLADDI 258
           ERIFIQTLIGRVLADDI
Sbjct: 241 ERIFIQTLIGRVLADDI 257

[Close]

BLAST of Clc11G07800 vs. TAIR 10
Match: ATCG00170.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 480.3 bits (1235), Expect = 9.5e-136
Identity = 245/255 (96.08%), Postives = 248/255 (97.25%), Query Frame = 0


Query: 5   MAERANLVFHNKVIDGTAIKRLISRLIYHFGMAYTSHILDQLKTLGFQQATATSISLGID 64
           MAERANLVFHNKVIDGTAIKRLISRLI HFGMAYTSHILDQ+KTLGFQQATATSISLGID
Sbjct: 1   MAERANLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 60

Query: 65  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 124
           DLLTIPSKGWLVQDAEQQS ILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61  DLLTIPSKGWLVQDAEQQSWILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120

Query: 125 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184
           MTDPFNPVH+MSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 MTDPFNPVHMMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180

Query: 185 SCYGARKGVVDTAVRTSDARYLTRRLVEVVQHIVVRRTDCGTIRGISVSP--GNRMIPER 244
           SCYGARKGVVDTAVRTSDA YLTRRLVEVVQHIVVRRTDCGTIRGISVSP   NRM+ ER
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNKNRMMSER 240

Query: 245 IFIQTLIGRVLADDI 258
           IFIQTLIGRVLADDI
Sbjct: 241 IFIQTLIGRVLADDI 255

[Close]

BLAST of Clc11G07800 vs. TAIR 10
Match: AT4G35800.1 (RNA polymerase II large subunit )

HSP 1 Score: 47.8 bits (112), Expect = 1.6e-05
Identity = 22/60 (36.67%), Postives = 40/60 (66.67%), Query Frame = 0


Query: 169 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDARYLTRRLVEVVQHIVVRRTDCGTIR 228
           ++++   GL+  E+     G R+G++DTAV+TS+  Y+ RRLV+ ++ I+V+    GT+R
Sbjct: 819 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVR 876

[Close]

BLAST of Clc11G07800 vs. TAIR 10
Match: AT5G60040.1 (nuclear RNA polymerase C1 )

HSP 1 Score: 45.4 bits (106), Expect = 7.8e-05
Identity = 21/63 (33.33%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 169 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDARYLTRRLVEVVQHIVVRRTDCGTIR 228
           + ++   GL+ TE+     G R+G+VDTAV+T+   Y++RRL++ ++ ++V   +  T+R
Sbjct: 835 VANSFYSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDN--TVR 894

Query: 229 GIS 232
             S
Sbjct: 895 NAS 895

[Close]

BLAST of Clc11G07800 vs. TAIR 10
Match: AT5G60040.2 (nuclear RNA polymerase C1 )

HSP 1 Score: 45.4 bits (106), Expect = 7.8e-05
Identity = 21/63 (33.33%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 169 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDARYLTRRLVEVVQHIVVRRTDCGTIR 228
           + ++   GL+ TE+     G R+G+VDTAV+T+   Y++RRL++ ++ ++V   +  T+R
Sbjct: 852 VANSFYSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDN--TVR 911

Query: 229 GIS 232
             S
Sbjct: 912 NAS 912

[Close]

BLAST of Clc11G07800 vs. TAIR 10
Match: AT3G57660.1 (nuclear RNA polymerase A1 )

HSP 1 Score: 44.7 bits (104), Expect = 1.3e-04
Identity = 37/119 (31.09%), Postives = 56/119 (47.06%), Query Frame = 0


Query: 130  NPVHIMSFSGARG---NASQVHQLVGMRGLMSDPQGQMID---LP--------------I 189
            N + +M+ SGA+G   N  Q+   +G + L      +M+    LP              I
Sbjct: 936  NCISLMTISGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFI 995

Query: 190  QSNLREGLSLTEYIISCYGARKGVVDTAVRTSDARYLTRRLVEVVQHIVVRRTDCGTIR 229
                  GL   EY   C   R+G+VDTAV+TS + YL R L++ ++ + V   DC T+R
Sbjct: 996  SDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKV-NYDC-TVR 1052

The following BLAST results are available for this feature:

BLAST of Clc11G07800 vs. NCBI nr


Match Name	E-value	Identity	Description
APW82621.1	3.3e-138	98.83	RNA polymerase beta'' subunit [Citrullus lanatus subsp. vulgaris]	[more]
YP_009431632.1	3.3e-138	98.83	RNA polymerase beta'' subunit [Citrullus rehmii] >ASY96233.1 RNA polymerase beta...	[more]
YP_009420784.1	3.3e-138	98.83	RNA polymerase beta'' subunit [Citrullus colocynthis] >ASP44453.1 RNA polymerase...	[more]
YP_009431547.1	3.3e-138	98.83	RNA polymerase beta'' subunit [Citrullus amarus] >APW82536.1 RNA polymerase beta...	[more]
APW82451.1	3.3e-138	98.83	RNA polymerase beta'' subunit [Citrullus lanatus subsp. vulgaris]	[more]

BLAST of Clc11G07800 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZP3	2.1e-140	98.44	DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 P...	[more]
Q49L08	1.5e-138	96.50	DNA-directed RNA polymerase subunit beta'' OS=Eucalyptus globulus subsp. globulu...	[more]
Q33C48	2.2e-137	96.11	DNA-directed RNA polymerase subunit beta'' OS=Nicotiana tomentosiformis OX=4098 ...	[more]
Q8S8Y1	2.9e-137	96.11	DNA-directed RNA polymerase subunit beta'' OS=Atropa belladonna OX=33113 GN=rpoC...	[more]
Q3C1G9	2.9e-137	96.11	DNA-directed RNA polymerase subunit beta'' OS=Nicotiana sylvestris OX=4096 GN=rp...	[more]

BLAST of Clc11G07800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1P8LFL6	1.6e-138	98.83	DNA-directed RNA polymerase OS=Citrullus mucosospermus OX=519315 GN=rpoC2 PE=3 S...	[more]
A0A1P8LF52	1.6e-138	98.83	DNA-directed RNA polymerase OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=rp...	[more]
A0A7T3QNJ7	1.6e-138	98.83	RNA polymerase beta'' subunit OS=Benincasa hispida OX=102211 GN=rpoC2 PE=4 SV=1	[more]
A0A343A8A0	1.6e-138	98.83	DNA-directed RNA polymerase subunit beta'' OS=Citrullus lanatus OX=3654 GN=rpoC2...	[more]
A0A249RX89	1.6e-138	98.83	DNA-directed RNA polymerase subunit beta'' OS=Citrullus rehmii OX=260675 GN=rpoC...	[more]

BLAST of Clc11G07800 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00170.1	9.5e-136	96.08	DNA-directed RNA polymerase family protein	[more]
AT4G35800.1	1.6e-05	36.67	RNA polymerase II large subunit	[more]
AT5G60040.1	7.8e-05	33.33	nuclear RNA polymerase C1	[more]
AT5G60040.2	7.8e-05	33.33	nuclear RNA polymerase C1	[more]
AT3G57660.1	1.3e-04	31.09	nuclear RNA polymerase A1	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038120	RNA polymerase Rpb1, funnel domain superfamily	GENE3D	1.10.132.30		coord: 63..200 e-value: 4.3E-48 score: 164.9
IPR007083	RNA polymerase Rpb1, domain 4	PFAM	PF05000	RNA_pol_Rpb1_4	coord: 99..161 e-value: 4.2E-11 score: 42.7
IPR042102	RNA polymerase Rpb1, domain 3 superfamily	GENE3D	1.10.274.100	RNA polymerase Rpb1, domain 3	coord: 2..62 e-value: 2.4E-11 score: 45.9
IPR007081	RNA polymerase Rpb1, domain 5	PFAM	PF04998	RNA_pol_Rpb1_5	coord: 176..233 e-value: 6.1E-18 score: 65.2
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 5..252
None	No IPR available	PANTHER	PTHR19376:SF47	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA''	coord: 5..252
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 12..234

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G07800.1	Clc11G07800.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0008270	zinc ion binding