Clc11G07795 (gene) Watermelon (cordophanus) v2

Overview
NameClc11G07795
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr11: 7764246 .. 7771130 (+)
RNA-Seq ExpressionClc11G07795
SyntenyClc11G07795
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTCACTTAGTCGAACTATAAAGAAAGAAAGGGAGTCCCAGGTTACGAAGTCAGGTCAGCTGGTTAAGGAAAGCTCAGGTTATGAAATCGCTTAGCCGTAATCCTCAAAACAACAATTCAATTCAATTCGAATCGACTAATCCGGTATATTTTCCACATTGATAGGAGTACGTTTATGTTTCTGCTTTACGAATATGATATTTTCTGGGTTTTTCTGATAATATCAAGTGAGTCGATTTGATAATGATCGAGTGACATTGCTTCTTCGGCCCGAACCCAGGAATCCCTTAGATATGATACAAAATGGATCTTGTTCTATCGTTGATCAGAGATTTCTCTATGAACAATACGAATCGGAGTTTGAAGAAGGGGAAGGAGAAGGAGTCCTTGACCACCTAAAAATAAATCAAAAATATTTATCGTATCCTTTTATTGTGTATCAAATTTATGGTTTCTATTGGTGCAAATCCAATCATCTCAATTTTCACCTTTGAGTGCGGTTTGAACTATTGATTTACGTAATTGGAAGTAACCAATTAGGTTTACGACGAAACCTAGAAATCGATCACTGATCCAATTTGAGTACCTCCACAGGATAGACCTCAACAGAAAACTGAAGAGTAACGGCAGCAAGTGATTGAGTTCAGTAGTTCCTCCAAAAGGGATTGGCTTAGTTTCTTGTGTACCAGATAGAAGACAAGGACAAGATCCAAATCTTGTCCAAGCCCTGAAGGAGATCTTTCAGGTGGGCAGGGCACTCCACTCTAGTACTTTCCTACATAGAGCAATAGCTGTAGCAGGGGCCATAGTTTACTAATAAGAACTATTGCGACTAATATAGCTACCCCGAAGAAAAGGCCCTTGGTTTAATATGCTTGTTAAAGTACTTGGTCATCTGCCTACGGTAATTTTCAGCATACGCAGATGCTTGTTCCCTTCTTTCCTCCAGCAAATCGAGGCATAGCCTCTGTTCAAGCTGGTTGGTTTCGGGACGAATGTCAGATGCAAAGCCCCGCACCTCATTAAGATCATATTGGCATACTCCCCCAAAAAAAAAAAGAGCAGACCCCATTGAAGACAAGCAAATCAACCATAGGCAAATTGATTCCCTGGAAAAGCAAAAAGAAAGGGGACTTCTTCTTCCCAGCCAGAAGCAAGCATAGCTTAGGCATAGGATTCCACATCCGTATCAGAAGTGCAAAAATTATTCGCACACCCCCCTCTCCCTATCGGTAAAGCTGCTTCGCTCCTCCCCTGAATTCAAAAAAAAGAAGATGAGGCTTTTGCTATGCCACCAGAATTGTGTAGTTAGAGTTATCCCCTTACACTGGGAGTGCTGCTCAAGTGCCGATTACATGGATTATACCGATTTGCACAAATACCTCGGCGATTCCCGCTCGTTAATACATAGAGCCCAATAAGTATATCTTGAGTTGGTACAGAAATGGGATCCCCCAATAGCTGAAGACAAGAGATTCATATGAGAAAACATAAGTAAACGCGCCTCCGCCTTCGCCCCGCTTCGATTTGTCTAGATGTGATCCAAGCGGGTTCAAGTGCCTGAATAGCGTATCTACCGAAGCAAATCCGATTGCCTCGATAAGATATTCCTTTCATTCTTCCTCTATGGTGTTTACGAAATCTGGTTCTTTTGGGGTTATAGTTGATGGTTATTTCTCAATTCCATCTCTACTACAGAACCGGACATGAGAGTTTCTTCTCATCCAGCTCCTCGCGAATGAAACGATTCAAAAAAATATACATGTATTTACTGAATAATAGATTGAATTATGGGATTCTTTGAGATTTCATTTAATCAATCTATTCGAAATTAGAAATTTGTATATCTTCTGTGATTTCAAATCCCGAGGTTAAGCGTACTCTGGCAACTTTACGTAAGGCAGAGTTTGGTTTTTTGGGGGTGATAGTGGAAAAGTAGACAGATAAGTCACCCTTACTGCCACTCGACAGAACCGTACGTGAGATTTTCACCTCATACGGCTCCTCGTTCAATTCTTTCGAAGTCATTGGATCCTTTTCCTCGTTCGAGAATCTCCTCCCTTCTTCCATTCCGTCCCGAAGAGTGACCGGGACCAATTCAGTCACGTTTTCATTCATTTGGAATCTGGGCTCTTCTACGTCATTTTTATTTACTTATTTTTCCCTCTTTTTTTTTTTCTTTTTTTTATTCACACGAGCCCATATCCTTGCTTTTCGATCAATCTCTAATTCTAATCTGCCTCCTCAATCAGATATTATGGTGCCGGTATAGACCGAAATTCCGTTATGGTCCAATTCTGACCGGTAATAGATACCGGGGCTTTGCAATATTTGACTGATCACAATTCTGTATAGTCCGGTAAATTAATTCCTCAGATGGCGAAAGAATCATCGTATGCCCCGGAAGATAGATTATTACGAGCCATACTTGGCATTCAGGTATCCACTTCAAAAGAAACCTGTCTAAAACTACCTATCGTCGGTAGGGGTCGAGTTATTGATGTGAGATGGATCCAGATGATTATGAATTACTTCTATATTCGATATTAATAATTAATAGGATTAATAGTAATAGAAAATATGATATTAACCCCCAGTAAAAAGAGAAAATCTCAAATTTCGGATTTTTGCGTGAAATCCCGGAATGGTTCGAATACCATCTACTAACATCACCGAAAACATTGTTAAAATACTTTTACGAGAAGGTTTTATTGAAAACGTACGGAAACATTGGGAAAGCAACAAGGATTTTTGGGTTTTAACCCTACGACATAGAAGAAATAGGAAAGCTTCGATACATTTCGAAATCGAGAAATTTCTACCGGAGCAGGTGCTATACGAGAACAATTAGCCGATCTGGATTTGCGACTTATTATAGATTATTCGTTGGTAGAATGGAAAGAATTAGGCGAAGAAGGACCCGCGGGTAATTAATTGGAAGATCGAAAAGTTGACCTCATAAATGGGGTGATTTTGTTGCAATTTTATGAATAAATAAAAAGGGGGATTAAGTTTTTTTACTTATTTATATTTATGGATTGAATAAACCCGATATATTTTTTTCTACTTCTTCCTTAATTTCTTCTTTCGCTGGATTCGGACTAATGAATTCGTTCATTTAGATTGATTGTCTCCATGTGGGATAATTCTAAAAAGAAAGGGTTTACAAAAAACGAGAAAAAAGGCGGGAGTTAACAACCGCCCCGGCCCAAACATGAGCCGAAAATCTTGTTTCTACGCTCATCAGTCGAGAAAGTTTTCATTGTCCGGCTAGCCCTAGATCTTAATCTTTTGACTTGGTAGGGACAATGCCCTTTGAGGTAGAGTGAGAGGATGAAACTTCAGAACACCTGGATCAAGTCCAAGTAAATGAGCCCTCTTTAGGAGGTAGTATATACTTCTGGACCCATTGGGAAAGGAAGACTCCCTAGCTCGATTTTCGAAAAGCTCTCTTTTGTGTGCCCGCTAAAGGCGTCAACTAGATGTATTGAATCGAATTGCTATAAGACAACCCTTGTGGATGTTTCAAAGAATGATTCTAGAATTCGATGGAATTCAAGATATGAATAATTGGTTTACGTTAGGGAAGAAACACATGTATATGTTATATTAGATATTAACTAGTTATATAGGAACTCCACTCAGCGTAATATGGAGGTACTTATGGCAGAACGGGCCAATCTGGTCTTTCACAATAAAGTGATAGATGGAACTGCCATTAAACGACTTATTAGCAGATTAATATATCACTTCGGAATGGCATATACATCACACATCCTGGATCAACTAAAGACTCTGGGGTTCCAGCAGGCCACTGCTACATCCATTTCATTAGGAATTGATGATCTTTTAACAATCCCTTCTAAGGGATGGCTAGTCCAAGATGCTGAACAACAAAGTTTGATTTTGGAAAAACACCATCATTATGGAAACGTACACGCAGTAGAAAAATTACGCCAGTCCATTGAGATATGGTATGCTACAAGTGAATATTTGCGACAAGAAATGAATCCTAATTTTAGGATGACCGACCCTTTTAATCCAGTCCATATAATGTCTTTTTCGGGAGCTCGAGGAAATGCATCTCAAGTACACCAATTAGTAGGTATGAGAGGATTAATGTCAGATCCACAAGGACAAATGATTGATTTACCCATTCAAAGCAATTTACGTGAGGGGCTGTCCTTAACGGAATATATAATTTCTTGCTACGGAGCGCGGAAAGGAGTTGTGGATACTGCTGTACGAACATCCGATGCTAGATATCTTACACGCAGACTTGTTGAAGTAGTTCAACACATTGTTGTACGTAGAACTGATTGTGGAACCATCCGAGGGATTTCAGTGAGTCCTGGAAATAGGATGATTCCGGAAAGAATTTTTATCCAAACATTAATTGGTCGTGTATTAGCGGACGATATAAAATAAAAATTCCAATGGCTTTTGCTACTATAACCTTCCCGACCACGATTTCTTTTTTTGTTCTAGTCACCCCAAAATACGAAATTGTATTCATACTAGGTATCAAAACAAACATAGAATAAATAAATCAAAATAGAAATGGATCAAGAAATAGTGGGTTCCTAACCATATTTCGGCTCGTGATCAATCCATAGATACCGATAGAAAATAAATAGGCACTTATAATAAGTACATGTTCGAGCATGAGTGACCAACTCCTTATCAATTCCGATTCATTTCAATATGAACAAAAATTTAATAGATTCAATTCAATTGACAAAAAAAAAAGTACAGAACACGGGAATATATTGGTAATCGATCGAATAAAAGAATTTTTATTTTAGACATGAAAAGACGATGTCCTAACCACTGGACGAAAGGGACCAAAAAGCCATTCTTCATATACCTCAGCTCCGATAATAGAAGTGGTTCGTTTTGTTTCTATACGCAATTCGACGATTTCGTTTGTGTTTATGTTGGCGATTTCTGATGTGAATTCGGCGGGCATGAACTCATTTCTCCTTTTCCCCACCCCTGCCCGAAATCCCGCTTTGGTGGGCTTCCCTCAAGGTGACACCGAAGGTCTACCTCCTTTAGTAGCTCGGCATCGGCAGATATTTGATTGTTTTTCTAATCTTCTTCACCCCTTCCCAAATCAATAACTAGAATGAAAAAAATGGGAATACCAACGCATCCGGGAATAAACGATTGATCTCGATTAATAGACCCGCTAACGCCCCGAACCATATAGTACTTACTACCGGACTCAATCGTTGCAGTACTTTCAAATCAAGATCAAATGATTTTCTTTTTCTTTCAAGGCACGATTCCTTACCAGTTATCCTGACGTCCTGTATGATTGCAGGGTTGTTCGGGAATCCCTTTGCAACTTCCTGGACGTTCATACATACTTTTTCTTTAGTCTTTCAATTACCGTCCCTTGTTTCAAAGAGAGCAGGACGGGTTATTCACATTTCATTTGATGGTCAGAGGCAAATTGAAAGCTAAGCAGTGGTAATTCTAAGGATTCCCAAGGGGAAAAATAGAGATGTCTCCTACGTTACCCGTAATATGTGGAAGTATCGACCGTCTGTAATGCATTGTATGTCCCATAATAGGTCCCATTCTTCTACCCTTTCCCGGGAGTCGATAACTATTCATAGCTATTACCTTGACACCAAAGAAGAGTTCGACCCAATGCTTTATTTCTGTCCTAGTTGATCCTGATTCGACATTAGAAGTATATTGATTTTTCCCCAATAACCGAATACTTTTGTCTGTAAATACTGCATATTTGATTCCATCGATAAATTTTCTTCCCTATGAGTTCGAGTCTCAATAAGAATGCTAGTTCTTACTGTTCATATGTTATGATATGAATATACCACACCAATTCGTTATGTATGGATGATGAGATTCCATCGATACAGAGCCAATTCCAATAGACTTATTGGAGGGTCCCATTGGCGTGCATCCAGTAGGAATTGAACCTACGAATTCGCCAATTATGAGTTGGGCGCTTTAACCATTCAGCCATGGATGCTTAGCGGGGATCCTCGTACATGGTGAATAACCAAATTCCAATTGAAATGAAATCTTTAGGATAAATCAATGCAATTTAGGAGGACTCAATGAAAGGACATCAATTCAAATCCTGGATTTTCGAATTGAGAGAGATCAAGAATTCTCACTATTTCTTAGATTCATGGACCCAATTCAATTCAGTGGGATCTTTCATTCACATTTTTTTCCATCAAGAACGTTTTATAAAACTCTTTTAGTTCAAAATGATCAATATGTAGAATCTGAACAAGTGATTGCTGAGATTCGCGCGGGAACATACACTCTTAATTTAAAAGAGAGGGTTCGAAAACATATTTATTCTGATTCAGAGGGAGAAATGCATTGGAGTACCGACGTGTATCATGCACCCGCTCTTTTTTTTATTTCATTAATATTAATGGAATTTCGGTTATTGATTAAGGTGAAGTTCCGTAAAAACACCTGCCTTCTTTAAAATATCATGAACAGTATATGGATAAAACTATGTCGAATCCTTCCTGAAACGTAACCTAGAATTGGATCCTCATTATCTAAACAAACCCAAAACATACCATTGGTAAGTGATTCAGTAATTAAACCTTCAGAACTCCTTTTTTGTTCTTTCATTTCAAATATGTATAAAGTATTAATTGAACGCAAGGAGACAGAGTATGACCAAATAAAAACGAAGAGGAAATAAAATCAAATTCTTTTCTTTTACATATCTATATACATCCTTTACATATTTATATAAATATCTGTGCCCTTCTTTATCTCTAAAAACAGGGTGTCCTAACCACCCAACAGCTATTCCATCCCCGTTGTCCATGGAACCCGCTCTGAATAATCCACCTTTTGCGGGATTATTCCCGATATAA

mRNA sequence

ATGAAGTCACTTAGTCGAACTATAAAGAAAGAAAGGGAGTCCCAGGTTACGAAGTCAGGTCAGCTGGTTAAGGAAAGCTCAGAATGGAAAGAATTAGGCGAAGAAGGACCCGCGGGGTGTCCTAACCACCCAACAGCTATTCCATCCCCGTTGTCCATGGAACCCGCTCTGAATAATCCACCTTTTGCGGGATTATTCCCGATATAA

Coding sequence (CDS)

ATGAAGTCACTTAGTCGAACTATAAAGAAAGAAAGGGAGTCCCAGGTTACGAAGTCAGGTCAGCTGGTTAAGGAAAGCTCAGAATGGAAAGAATTAGGCGAAGAAGGACCCGCGGGGTGTCCTAACCACCCAACAGCTATTCCATCCCCGTTGTCCATGGAACCCGCTCTGAATAATCCACCTTTTGCGGGATTATTCCCGATATAA

Protein sequence

MKSLSRTIKKERESQVTKSGQLVKESSEWKELGEEGPAGCPNHPTAIPSPLSMEPALNNPPFAGLFPI
Homology
[Close]
BLAST of Clc11G07795 vs. NCBI nr
Match: VVW85152.1 (unnamed protein product, partial [Nymphaea colorata])

HSP 1 Score: 64.7 bits (156), Expect = 3.5e-07
Identity = 28/30 (93.33%), Postives = 29/30 (96.67%), Query Frame = 0 

Query: 39 GCPNHPTAIPSPLSMEPALNNPPFAGLFPI 69
          GCPNHPTAIPSPLS+EPALNNPPFAGL PI
Sbjct: 70 GCPNHPTAIPSPLSIEPALNNPPFAGLLPI 99

[Close]
BLAST of Clc11G07795 vs. NCBI nr
Match: QHO39203.1 (Pentatricopeptide repeat-containing protein [Arachis hypogaea])

HSP 1 Score: 59.3 bits (142), Expect = 1.5e-05
Identity = 26/30 (86.67%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 39  GCPNHPTAIPSPLSMEPALNNPPFAGLFPI 69
           GCPN PTAIPSPLS+EPALN PPFAGL PI
Sbjct: 603 GCPNQPTAIPSPLSIEPALNKPPFAGLLPI 632

[Close]
BLAST of Clc11G07795 vs. ExPASy TrEMBL
Match: A0A5K1HBP9 (Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS29157 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.7e-07
Identity = 28/30 (93.33%), Postives = 29/30 (96.67%), Query Frame = 0 

Query: 39 GCPNHPTAIPSPLSMEPALNNPPFAGLFPI 69
          GCPNHPTAIPSPLS+EPALNNPPFAGL PI
Sbjct: 70 GCPNHPTAIPSPLSIEPALNNPPFAGLLPI 99

The following BLAST results are available for this feature:
BLAST of Clc11G07795 vs. NCBI nr
Match NameE-valueIdentityDescription
VVW85152.13.5e-0793.33unnamed protein product, partial [Nymphaea colorata][more]
QHO39203.11.5e-0586.67Pentatricopeptide repeat-containing protein [Arachis hypogaea][more]
BLAST of Clc11G07795 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc11G07795 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5K1HBP91.7e-0793.33Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS29... [more]
BLAST of Clc11G07795 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..68

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc11G07795.1Clc11G07795.1mRNA