Clc11G07750 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G07750
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr11: 7753675 .. 7754763 (-)
RNA-Seq Expression	Clc11G07750
Synteny	Clc11G07750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGAGTTTGGTTTTTTGGGGGTGATAGTGGAAAAGTTGACAGATAAGTCACCCTTACTGCCACTCGACAGAACCGTACGTGAGATTTTCACCTCATACGGCTCCTCGTTCAATTCTTTCGAAGTCATTGGATCCTTTTCCTCGTTCGAGAATCTCCTCCCTTTTTCTCGGTGTAGGTCCGGGATAATCCTTTGTTCCACAGTCTGGGTCTATTTACAACTAGCCAATTAAGAATTCTCAGATGTACTAGTACTAGCAAGTGCATCTTTGATGCAGTCATCGATTCTCCCGTGCTGGGTTACGGGTGGGCATTTTACCAGAGGTTTCTATTGTATCAATCTACCCTTGTTTAATTCCTGTTGAAGCATATACTCGGGGGGTGGGTGCAGGGCGGACGATTTCAAAGCGGACTCCCATTCATTAGATAGAGAAGATCGCCAAGATTTCGTGATCCGCTGCCGAACTTATTCCTTCCAATTCAACGGGTATTCTCAACATTATGCCTTGAAGAGGCCCATGGTTATGGAACCGAATCCATTAGTATGGAACATTTTCTTTTCCAAGTGAAATCCCCTAGTATATGAAAGAGTGAAAAAGTGCTTTCGTTGTTGTGGAATAAGAAGCCTTCGTATTTTAATGCATGTATTTAATTTATTCGGAGCTATTAGAGCGGGATCCACTTTTTGGGGAATATGGGTCGAAGCAATAACAAGAATATTTCTAGTGGAACATCTTTCACAATCCCTGGAGAGATAGTTCACTAATAGACCAAGCGGTGTTAGATGATCAATTAATTACGCACTGTTAGAGGGGATCGAAGGAGACGTTCTATTATGAAACTCCCTGCCTGGTGGCATAAAAGGAGTCTAACGCCTACGACATTCATGATCAGAATCGACTCCTGGACTGGCATTCAATTGAATCAACAACAGATGCATCCACGGAAGCCGTTGTGTTTCGGTTGTAGCTGTTCGGGACAATTCGTCGTTGGGAATAACGAAAGAGAAATCCGTCACATATCCTGTTTTTGACTGCTACGCCCTCTCATACCCTACTCCAACTTTGCTCTCTTCTTATACTCCTTAA

mRNA sequence

ATGAGAGAGTTTGGTTTTTTGGGGGTGATAGTGGAAAAGTTGACAGATAAGTCACCCTTACTGCCACTCGACAGAACCGTACGTGAGATTTTCACCTCATACGGCTCCTCGTTCAATTCTTTCGAAGTCATTGGATCCTTTTCCTCGTTCGAGAATCTCCTCCCTTTTTCTCGGTTCATCGATTCTCCCGTGCTGGGTTACGGGTGGGCATTTTACCAGAGGGCGGACGATTTCAAAGCGGACTCCCATTCATTAGATAGAGAAGATCGCCAAGATTTCGTGATCCGCTGCCGAACTTATTCCTTCCAATTCAACGGATGCATCCACGGAAGCCGTTGTGTTTCGGTTGTAGCTGTTCGGGACAATTCGTCGTTGGGAATAACGAAAGAGAAATCCGTCACATATCCTGTTTTTGACTGCTACGCCCTCTCATACCCTACTCCAACTTTGCTCTCTTCTTATACTCCTTAA

Coding sequence (CDS)

ATGAGAGAGTTTGGTTTTTTGGGGGTGATAGTGGAAAAGTTGACAGATAAGTCACCCTTACTGCCACTCGACAGAACCGTACGTGAGATTTTCACCTCATACGGCTCCTCGTTCAATTCTTTCGAAGTCATTGGATCCTTTTCCTCGTTCGAGAATCTCCTCCCTTTTTCTCGGTTCATCGATTCTCCCGTGCTGGGTTACGGGTGGGCATTTTACCAGAGGGCGGACGATTTCAAAGCGGACTCCCATTCATTAGATAGAGAAGATCGCCAAGATTTCGTGATCCGCTGCCGAACTTATTCCTTCCAATTCAACGGATGCATCCACGGAAGCCGTTGTGTTTCGGTTGTAGCTGTTCGGGACAATTCGTCGTTGGGAATAACGAAAGAGAAATCCGTCACATATCCTGTTTTTGACTGCTACGCCCTCTCATACCCTACTCCAACTTTGCTCTCTTCTTATACTCCTTAA

Protein sequence

MREFGFLGVIVEKLTDKSPLLPLDRTVREIFTSYGSSFNSFEVIGSFSSFENLLPFSRFIDSPVLGYGWAFYQRADDFKADSHSLDREDRQDFVIRCRTYSFQFNGCIHGSRCVSVVAVRDNSSLGITKEKSVTYPVFDCYALSYPTPTLLSSYTP

Homology

[Close]

BLAST of Clc11G07750 vs. NCBI nr
Match: KAF4399809.1 (hypothetical protein G4B88_021023 [Cannabis sativa])

HSP 1 Score: 93.6 bits (231), Expect = 1.6e-15
Identity = 47/51 (92.16%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 3   EFGFLGVIVEKLTDKSPLLPLDRTVREIFTSYGSSFNSFEVIGSFSSFENL 54
           EFGFLGVIVEKLTDK PLLPL RTV EIF SYGSSFNSFEVIGSFSSFENL
Sbjct: 100 EFGFLGVIVEKLTDKPPLLPLYRTVHEIFISYGSSFNSFEVIGSFSSFENL 150

[Close]

BLAST of Clc11G07750 vs. NCBI nr
Match: KAF4359989.1 (hypothetical protein F8388_004496 [Cannabis sativa])

HSP 1 Score: 91.3 bits (225), Expect = 8.1e-15
Identity = 46/51 (90.20%), Postives = 46/51 (90.20%), Query Frame = 0


Query: 3  EFGFLGVIVEKLTDKSPLLPLDRTVREIFTSYGSSFNSFEVIGSFSSFENL 54
          EFGFLGVIVEKLTDK PLLPL RTV EIF SYGSS NSFEVIGSFSSFENL
Sbjct: 40 EFGFLGVIVEKLTDKPPLLPLYRTVHEIFISYGSSLNSFEVIGSFSSFENL 90

[Close]

BLAST of Clc11G07750 vs. NCBI nr
Match: KAD4586413.1 (hypothetical protein E3N88_24014 [Mikania micrantha])

HSP 1 Score: 90.1 bits (222), Expect = 1.8e-14
Identity = 47/55 (85.45%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 3   EFGFLGVIVEKLTDKSPLLPLDRTVREIFTSYGSSFNSFEVIGSFSSFENLLPFS 58
           EFGF GVIVEKLTDKS LLPL  TV EIFTSYGSSFNSFEVIGSFS FEN LP S
Sbjct: 161 EFGFFGVIVEKLTDKSSLLPLYGTVYEIFTSYGSSFNSFEVIGSFSKFENPLPSS 215

[Close]

BLAST of Clc11G07750 vs. NCBI nr
Match: VVW91095.1 (unnamed protein product, partial [Nymphaea colorata])

HSP 1 Score: 89.0 bits (219), Expect = 4.0e-14
Identity = 46/54 (85.19%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 3  EFGFLGVIVEKLTDKSPLLPLDRTVREIFTSYGSSFNSFEVIGSFSSFENLLPF 57
          EFGFLGVIVEKLTDKSPLL L RTV EIFTSYGSSFNSFE IGSFSSF    PF
Sbjct: 12 EFGFLGVIVEKLTDKSPLLSLYRTVHEIFTSYGSSFNSFEGIGSFSSFRESPPF 65

[Close]

BLAST of Clc11G07750 vs. NCBI nr
Match: KAF4359997.1 (hypothetical protein F8388_004504 [Cannabis sativa])

HSP 1 Score: 87.8 bits (216), Expect = 8.9e-14
Identity = 44/51 (86.27%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 3   EFGFLGVIVEKLTDKSPLLPLDRTVREIFTSYGSSFNSFEVIGSFSSFENL 54
           EFGFLG I+EKLTDK PLLPL RTV EIF SYGSSF SFEVIGSFSSFENL
Sbjct: 53  EFGFLGAIMEKLTDKPPLLPLYRTVHEIFISYGSSFYSFEVIGSFSSFENL 103

[Close]

BLAST of Clc11G07750 vs. ExPASy TrEMBL
Match: A0A7J6HY80 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_021023 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 7.9e-16
Identity = 47/51 (92.16%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 3   EFGFLGVIVEKLTDKSPLLPLDRTVREIFTSYGSSFNSFEVIGSFSSFENL 54
           EFGFLGVIVEKLTDK PLLPL RTV EIF SYGSSFNSFEVIGSFSSFENL
Sbjct: 100 EFGFLGVIVEKLTDKPPLLPLYRTVHEIFISYGSSFNSFEVIGSFSSFENL 150

[Close]

BLAST of Clc11G07750 vs. ExPASy TrEMBL
Match: A0A7J6EQK8 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_004496 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 3.9e-15
Identity = 46/51 (90.20%), Postives = 46/51 (90.20%), Query Frame = 0


Query: 3  EFGFLGVIVEKLTDKSPLLPLDRTVREIFTSYGSSFNSFEVIGSFSSFENL 54
          EFGFLGVIVEKLTDK PLLPL RTV EIF SYGSS NSFEVIGSFSSFENL
Sbjct: 40 EFGFLGVIVEKLTDKPPLLPLYRTVHEIFISYGSSLNSFEVIGSFSSFENL 90

[Close]

BLAST of Clc11G07750 vs. ExPASy TrEMBL
Match: A0A5N6NGN3 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_24014 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 8.7e-15
Identity = 47/55 (85.45%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 3   EFGFLGVIVEKLTDKSPLLPLDRTVREIFTSYGSSFNSFEVIGSFSSFENLLPFS 58
           EFGF GVIVEKLTDKS LLPL  TV EIFTSYGSSFNSFEVIGSFS FEN LP S
Sbjct: 161 EFGFFGVIVEKLTDKSSLLPLYGTVYEIFTSYGSSFNSFEVIGSFSKFENPLPSS 215

[Close]

BLAST of Clc11G07750 vs. ExPASy TrEMBL
Match: A0A5K1HTV9 (Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS30846 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.9e-14
Identity = 46/54 (85.19%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 3  EFGFLGVIVEKLTDKSPLLPLDRTVREIFTSYGSSFNSFEVIGSFSSFENLLPF 57
          EFGFLGVIVEKLTDKSPLL L RTV EIFTSYGSSFNSFE IGSFSSF    PF
Sbjct: 12 EFGFLGVIVEKLTDKSPLLSLYRTVHEIFTSYGSSFNSFEGIGSFSSFRESPPF 65

[Close]

BLAST of Clc11G07750 vs. ExPASy TrEMBL
Match: A0A7J6ENI3 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_004504 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 4.3e-14
Identity = 44/51 (86.27%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 3   EFGFLGVIVEKLTDKSPLLPLDRTVREIFTSYGSSFNSFEVIGSFSSFENL 54
           EFGFLG I+EKLTDK PLLPL RTV EIF SYGSSF SFEVIGSFSSFENL
Sbjct: 53  EFGFLGAIMEKLTDKPPLLPLYRTVHEIFISYGSSFYSFEVIGSFSSFENL 103

The following BLAST results are available for this feature:

BLAST of Clc11G07750 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF4399809.1	1.6e-15	92.16	hypothetical protein G4B88_021023 [Cannabis sativa]	[more]
KAF4359989.1	8.1e-15	90.20	hypothetical protein F8388_004496 [Cannabis sativa]	[more]
KAD4586413.1	1.8e-14	85.45	hypothetical protein E3N88_24014 [Mikania micrantha]	[more]
VVW91095.1	4.0e-14	85.19	unnamed protein product, partial [Nymphaea colorata]	[more]
KAF4359997.1	8.9e-14	86.27	hypothetical protein F8388_004504 [Cannabis sativa]	[more]

BLAST of Clc11G07750 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc11G07750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J6HY80	7.9e-16	92.16	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_021023 PE=4 SV=1	[more]
A0A7J6EQK8	3.9e-15	90.20	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_004496 PE=3 SV=1	[more]
A0A5N6NGN3	8.7e-15	85.45	Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_24014 PE=4 SV=1	[more]
A0A5K1HTV9	1.9e-14	85.19	Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS30...	[more]
A0A7J6ENI3	4.3e-14	86.27	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_004504 PE=3 SV=1	[more]

BLAST of Clc11G07750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G07750.1	Clc11G07750.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome