Clc11G07738 (gene) Watermelon (cordophanus) v2

Overview
NameClc11G07738
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description50S ribosomal protein L16, chloroplastic
LocationClcChr11: 7749747 .. 7750031 (+)
RNA-Seq ExpressionClc11G07738
SyntenyClc11G07738
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGGAATATCTTATCGAGGCAATCAGATTTGCTTCGGTAGATACGCTATTCAGGCACTTGAACCCGCTTGGATCACATCTAGACAAATCGAAGCGGGACGAAGGGCAATGACACGAAATGCACGGAGCAGCTTTTTCAACTGTCGCCTAATCTCCCAACATGCTCAAAAACCGAGAGCCGCCCAGGGACTGGACAACCGGAGGGAGCTTGCTTCTCGAAAGAGGATAGGCCGGTCAAACAAAAACAAGGCGCATGCGTGCTCCTCCAGAAGCACACACTAA

mRNA sequence

ATGAAAGGAATATCTTATCGAGGCAATCAGATTTGCTTCGGTAGATACGCTATTCAGGCACTTGAACCCGCTTGGATCACATCTAGACAAATCGAAGCGGGACGAAGGGCAATGACACGAAATGCACGGAGCAGCTTTTTCAACTGTCGCCTAATCTCCCAACATGCTCAAAAACCGAGAGCCGCCCAGGGACTGGACAACCGGAGGGAGCTTGCTTCTCGAAAGAGGATAGGCCGGTCAAACAAAAACAAGGCGCATGCGTGCTCCTCCAGAAGCACACACTAA

Coding sequence (CDS)

ATGAAAGGAATATCTTATCGAGGCAATCAGATTTGCTTCGGTAGATACGCTATTCAGGCACTTGAACCCGCTTGGATCACATCTAGACAAATCGAAGCGGGACGAAGGGCAATGACACGAAATGCACGGAGCAGCTTTTTCAACTGTCGCCTAATCTCCCAACATGCTCAAAAACCGAGAGCCGCCCAGGGACTGGACAACCGGAGGGAGCTTGCTTCTCGAAAGAGGATAGGCCGGTCAAACAAAAACAAGGCGCATGCGTGCTCCTCCAGAAGCACACACTAA

Protein sequence

MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNARSSFFNCRLISQHAQKPRAAQGLDNRRELASRKRIGRSNKNKAHACSSRSTH
Homology
[Close]
BLAST of Clc11G07738 vs. NCBI nr
Match: YP_009570567.1 (50S ribosomal protein L16 [Dioncophyllum thollonii] >QBC67450.1 50S ribosomal protein L16 [Dioncophyllum thollonii])

HSP 1 Score: 90.1 bits (222), Expect = 1.1e-14
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 0 

Query: 1  MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR 44
          MKGISYRGNQICFGRYA+QALEPAWITSRQIEAGRRAMTRNAR
Sbjct: 17 MKGISYRGNQICFGRYALQALEPAWITSRQIEAGRRAMTRNAR 59

[Close]
BLAST of Clc11G07738 vs. NCBI nr
Match: YP_009571214.1 (50S ribosomal protein L16 [Basella alba] >YP_009571554.1 50S ribosomal protein L16 [Mirabilis jalapa] >YP_009776944.1 ribosomal protein L16 [Boerhavia diffusa] >YP_009861537.1 50S ribosomal protein L16 [Mirabilis himalaica] >QBC66605.1 50S ribosomal protein L16 [Basella alba] >QBC68204.1 50S ribosomal protein L16 [Mirabilis jalapa] >QJA27597.1 ribosomal protein L16 [Boerhavia diffusa] >QKN19434.1 50S ribosomal protein L16 [Mirabilis himalaica] >QKX48261.1 ribosomal protein L16 [Mirabilis himalaica])

HSP 1 Score: 90.1 bits (222), Expect = 1.1e-14
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 0 

Query: 1  MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR 44
          MKGISYRGNQICFGRYA+QALEPAWITSRQIEAGRRAMTRNAR
Sbjct: 17 MKGISYRGNQICFGRYALQALEPAWITSRQIEAGRRAMTRNAR 59

[Close]
BLAST of Clc11G07738 vs. NCBI nr
Match: YP_010139655.1 (ribosomal protein L16 [Gynura cusimbua] >QQK55870.1 ribosomal protein L16 [Gynura cusimbua])

HSP 1 Score: 90.1 bits (222), Expect = 1.1e-14
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 0 

Query: 1  MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR 44
          MKGISYRGNQICFGRYA+QALEPAWITSRQIEAGRRAMTRNAR
Sbjct: 18 MKGISYRGNQICFGRYALQALEPAWITSRQIEAGRRAMTRNAR 60

[Close]
BLAST of Clc11G07738 vs. NCBI nr
Match: YP_009572563.1 (ribosomal protein L16 [Acleisanthes obtusa] >QBE87678.1 ribosomal protein L16 [Acleisanthes obtusa])

HSP 1 Score: 90.1 bits (222), Expect = 1.1e-14
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 0 

Query: 1  MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR 44
          MKGISYRGNQICFGRYA+QALEPAWITSRQIEAGRRAMTRNAR
Sbjct: 17 MKGISYRGNQICFGRYALQALEPAWITSRQIEAGRRAMTRNAR 59

[Close]
BLAST of Clc11G07738 vs. NCBI nr
Match: YP_009572477.1 (ribosomal protein L16 [Nyctaginia capitata] >QBE87441.1 ribosomal protein L16 [Nyctaginia capitata])

HSP 1 Score: 90.1 bits (222), Expect = 1.1e-14
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 0 

Query: 1  MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR 44
          MKGISYRGNQICFGRYA+QALEPAWITSRQIEAGRRAMTRNAR
Sbjct: 17 MKGISYRGNQICFGRYALQALEPAWITSRQIEAGRRAMTRNAR 59

[Close]
BLAST of Clc11G07738 vs. ExPASy Swiss-Prot
Match: Q4VZN1 (50S ribosomal protein L16, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.2e-17
Identity = 42/43 (97.67%), Postives = 42/43 (97.67%), Query Frame = 0 

Query: 1  MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR 44
          MKGISYRGN ICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR
Sbjct: 17 MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR 59

[Close]
BLAST of Clc11G07738 vs. ExPASy Swiss-Prot
Match: B2XWR1 (50S ribosomal protein L16, chloroplastic OS=Fagopyrum esculentum subsp. ancestrale OX=180217 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.1e-17
Identity = 41/43 (95.35%), Postives = 43/43 (100.00%), Query Frame = 0 

Query: 1  MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR 44
          MKGISYRGN+ICFGRYA+QALEPAWITSRQIEAGRRAMTRNAR
Sbjct: 17 MKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNAR 59

[Close]
BLAST of Clc11G07738 vs. ExPASy Swiss-Prot
Match: P17353 (50S ribosomal protein L16, chloroplastic OS=Spinacia oleracea OX=3562 GN=rpl16 PE=1 SV=2)

HSP 1 Score: 88.6 bits (218), Expect = 4.1e-17
Identity = 41/43 (95.35%), Postives = 43/43 (100.00%), Query Frame = 0 

Query: 1  MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR 44
          MKGISYRGN+ICFGRYA+QALEPAWITSRQIEAGRRAMTRNAR
Sbjct: 17 MKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNAR 59

[Close]
BLAST of Clc11G07738 vs. ExPASy Swiss-Prot
Match: Q09WY0 (50S ribosomal protein L16, chloroplastic OS=Morus indica OX=248361 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 5.4e-17
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 0 

Query: 1  MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR 44
          MKGISYRGN ICFGRYA+QALEPAWITSRQIEAGRRAMTRNAR
Sbjct: 17 MKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNAR 59

[Close]
BLAST of Clc11G07738 vs. ExPASy Swiss-Prot
Match: A0ZZ72 (50S ribosomal protein L16, chloroplastic OS=Gossypium barbadense OX=3634 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.2e-16
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 0 

Query: 1  MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR 44
          MKGISYRGN+ICFGRYA+QALEPAWITSRQIEAGRRAMTRN R
Sbjct: 17 MKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNVR 59

[Close]
BLAST of Clc11G07738 vs. ExPASy TrEMBL
Match: A0A6M9TTQ1 (50S ribosomal protein L16, chloroplastic OS=Mirabilis himalaica OX=482968 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.3e-15
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 0 

Query: 1  MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR 44
          MKGISYRGNQICFGRYA+QALEPAWITSRQIEAGRRAMTRNAR
Sbjct: 17 MKGISYRGNQICFGRYALQALEPAWITSRQIEAGRRAMTRNAR 59

[Close]
BLAST of Clc11G07738 vs. ExPASy TrEMBL
Match: A0A411L538 (50S ribosomal protein L16, chloroplastic OS=Nyctaginia capitata OX=363211 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.3e-15
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 0 

Query: 1  MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR 44
          MKGISYRGNQICFGRYA+QALEPAWITSRQIEAGRRAMTRNAR
Sbjct: 17 MKGISYRGNQICFGRYALQALEPAWITSRQIEAGRRAMTRNAR 59

[Close]
BLAST of Clc11G07738 vs. ExPASy TrEMBL
Match: A0A411L5S1 (50S ribosomal protein L16, chloroplastic OS=Acleisanthes obtusa OX=117583 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.3e-15
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 0 

Query: 1  MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR 44
          MKGISYRGNQICFGRYA+QALEPAWITSRQIEAGRRAMTRNAR
Sbjct: 17 MKGISYRGNQICFGRYALQALEPAWITSRQIEAGRRAMTRNAR 59

[Close]
BLAST of Clc11G07738 vs. ExPASy TrEMBL
Match: A0A411JT03 (50S ribosomal protein L16 OS=Mirabilis jalapa OX=3538 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.3e-15
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 0 

Query: 1  MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR 44
          MKGISYRGNQICFGRYA+QALEPAWITSRQIEAGRRAMTRNAR
Sbjct: 17 MKGISYRGNQICFGRYALQALEPAWITSRQIEAGRRAMTRNAR 59

[Close]
BLAST of Clc11G07738 vs. ExPASy TrEMBL
Match: A0A411JND6 (50S ribosomal protein L16 OS=Basella alba OX=3589 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.3e-15
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 0 

Query: 1  MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR 44
          MKGISYRGNQICFGRYA+QALEPAWITSRQIEAGRRAMTRNAR
Sbjct: 17 MKGISYRGNQICFGRYALQALEPAWITSRQIEAGRRAMTRNAR 59

[Close]
BLAST of Clc11G07738 vs. TAIR 10
Match: ATCG00790.1 (ribosomal protein L16 )

HSP 1 Score: 80.9 bits (198), Expect = 6.1e-16
Identity = 37/43 (86.05%), Postives = 40/43 (93.02%), Query Frame = 0 

Query: 1  MKGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR 44
          +KGIS RGN+ICFGRYA+Q LEPAWITSRQIEAGRRAMTRN R
Sbjct: 17 LKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVR 59

[Close]
BLAST of Clc11G07738 vs. TAIR 10
Match: AT2G28830.1 (PLANT U-BOX 12 )

HSP 1 Score: 59.7 bits (143), Expect = 1.5e-09
Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 0 

Query: 2   KGISYRGNQICFGRYAIQALEPAWITSRQIEAGRRAMTRN 42
           KG+S +G  IC  RYA+Q LEPAWITSRQIEAGRRAMTRN
Sbjct: 847 KGVSSQG-YIC-SRYALQTLEPAWITSRQIEAGRRAMTRN 884

The following BLAST results are available for this feature:
BLAST of Clc11G07738 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_009570567.11.1e-1497.6750S ribosomal protein L16 [Dioncophyllum thollonii] >QBC67450.1 50S ribosomal pr... [more]
YP_009571214.11.1e-1497.6750S ribosomal protein L16 [Basella alba] >YP_009571554.1 50S ribosomal protein L... [more]
YP_010139655.11.1e-1497.67ribosomal protein L16 [Gynura cusimbua] >QQK55870.1 ribosomal protein L16 [Gynur... [more]
YP_009572563.11.1e-1497.67ribosomal protein L16 [Acleisanthes obtusa] >QBE87678.1 ribosomal protein L16 [A... [more]
YP_009572477.11.1e-1497.67ribosomal protein L16 [Nyctaginia capitata] >QBE87441.1 ribosomal protein L16 [N... [more]
BLAST of Clc11G07738 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q4VZN13.2e-1797.6750S ribosomal protein L16, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl16 PE=... [more]
B2XWR14.1e-1795.3550S ribosomal protein L16, chloroplastic OS=Fagopyrum esculentum subsp. ancestra... [more]
P173534.1e-1795.3550S ribosomal protein L16, chloroplastic OS=Spinacia oleracea OX=3562 GN=rpl16 P... [more]
Q09WY05.4e-1795.3550S ribosomal protein L16, chloroplastic OS=Morus indica OX=248361 GN=rpl16 PE=3... [more]
A0ZZ721.2e-1693.0250S ribosomal protein L16, chloroplastic OS=Gossypium barbadense OX=3634 GN=rpl1... [more]
BLAST of Clc11G07738 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6M9TTQ15.3e-1597.6750S ribosomal protein L16, chloroplastic OS=Mirabilis himalaica OX=482968 GN=rpl... [more]
A0A411L5385.3e-1597.6750S ribosomal protein L16, chloroplastic OS=Nyctaginia capitata OX=363211 GN=rpl... [more]
A0A411L5S15.3e-1597.6750S ribosomal protein L16, chloroplastic OS=Acleisanthes obtusa OX=117583 GN=rpl... [more]
A0A411JT035.3e-1597.6750S ribosomal protein L16 OS=Mirabilis jalapa OX=3538 GN=rpl16 PE=3 SV=1[more]
A0A411JND65.3e-1597.6750S ribosomal protein L16 OS=Basella alba OX=3589 GN=rpl16 PE=3 SV=1[more]
BLAST of Clc11G07738 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00790.16.1e-1686.05ribosomal protein L16 [more]
AT2G28830.11.5e-0977.50PLANT U-BOX 12 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000114Ribosomal protein L16PRINTSPR00060RIBOSOMALL16coord: 26..37
score: 71.5
coord: 8..20
score: 48.62
IPR000114Ribosomal protein L16PANTHERPTHR1222050S/60S RIBOSOMAL PROTEIN L16coord: 1..48
IPR036920Ribosomal protein L10e/L16 superfamilyGENE3D3.90.1170.10Ribosomal protein L10e/L16coord: 1..68
e-value: 4.3E-13
score: 51.4
IPR036920Ribosomal protein L10e/L16 superfamilySUPERFAMILY54686Ribosomal protein L16p/L10ecoord: 1..52
IPR016180Ribosomal protein L10e/L16PFAMPF00252Ribosomal_L16coord: 2..62
e-value: 1.7E-10
score: 41.0
IPR016180Ribosomal protein L10e/L16CDDcd01433Ribosomal_L16_L10ecoord: 7..51
e-value: 1.28243E-13
score: 59.0423
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..77
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 58..94

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc11G07738.1Clc11G07738.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome