Clc11G07732 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G07732
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Cytochrome b559 subunit alpha
Location	ClcChr11: 7744759 .. 7746080 (-)
RNA-Seq Expression	Clc11G07732
Synteny	Clc11G07732

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGACCAAATCCAAAGGAGATCGTGGGATCAAAGTGGACGTTCAAAATTTCCATGGCCGATTGCATCCCGAGGACTTTCTTGATTGAAAAAGTAGCGTGGAAAAGTTCTTTGATTGGAAAGAACGAGACGAGGTATGCGAAGATGAAATTCCTGAGCACGGGTTATAGGAAGAATCCGAGGATGAGAATGAGGAAGTAGAGAGCAACCAATCTTCTTGTAGTGGAGTTGGGTTTAGCTTACGATGTTTTTGGAAGCCCTCGTCCAAATGAGTATTTTACAGAGAGCCGACAAGGAATTCCATTAATAACTGGCCGTTTTGATTCTTTGGAACAACTCGATGAATTTAGTAGATCTTTTTAGGAGGACCAAATGACTATTGATAAAACTTATCCTATTTTTACAGTGCGATGGTTGGCTGTTCACGGACTAGCTGTACCTATCGTTTCTTTTTTAGGGTCAATATCAGCAATGCAATTCATCCAACGATAAACCTAATCCGAATTATAGAGCTATGACACAATCAAATCTGAACGAACAAAATGTTGAATTGAATCGTACCAGTCTTTACTGGGGGTTATTACTCATTTTTGTACTTGCTGTTTTATTTTCCAATTATTTCTTCAATTAAATAAAAGAAAATGTAATTGTACATGCTCCCATAGCAATAACATATTTTGGTTCAGGCATTTGCTCATATAATCTTACTAAAGAAGGAGCCATTTTCATTGTTACCATACCCACTGTTAAAATTAAGTCTGCCTGTCTGATGTTTTATCTAGGCGAGGCTCATTCAATGACGAGATCAAATCTCGTCAGATATAAAGCGAGAAGGGATGGTTTAGAATAGCCCGAAGAGATGCTTGTTCCTTTCTTTCTTTGATTTGAAACATCCCAGCGGCAAATCAAGTGCGGTAAAGAAAATTGAAAAAAAAAAAATCAAATCGCACCATCTCTGTAATAGGTGAATGCCTCTTTTTCCCCGGAAGTTGTCGGAATTATTCGTAATAAGATATTGGCTACAATTGAAAAGGTCTTATCGATAAAATTTCCATTTATCCCACTAGATCTAGGCATCGGTACCAACCCCATTCTATAATTTTCAAAATCTCGCAAAAATGCAGCGTGGTTTTTCTCTAAAAACTCGGAAGGTTCCGCCAGAAATAGTTTGGGATTCAATCGTTTGGTCTTTTGAAGTTCCCTGATTGGTTTGAGAACCTGATTGAAGAGACCTGCATTTTGGAATACACGTAGATCTGCAGCGGTTTCAATATTTCCCATACGTAATCCTTTGTATAGACGTTGGGGCGGATGAACACTAA

mRNA sequence

ATGAGACCAAATCCAAAGGAGATCGTGGGATCAAAGTGGACGTTCAAAATTTCCATGGCCGATTGCATCCCGAGGACTTTCTTGATTGAAAAAGTAGCGTGGAAAAGTTCTTTGATTGGAAAGAACGAGACGAGGTATGCGAAGATGAAATTCCTGAGCACGGTGGAGTTGGGTTTAGCTTACGATGTTTTTGGAAGCCCTCGTCCAAATGAGTATTTTACAGAGAGCCGACAAGGAATTCCATTAATAACTGGCCGTTTTGATTCTTTGGAACAACTCGATGAATTTATGCGATGGTTGGCTGTTCACGGACTAGCTGTACCTATCGGTCAATATCAGCAATGCAATTCATCCAACGATAAACCTAATCCGAATTATAGAGCTATGACACAATCAAATCTGAACGAACAAAATGTTGAATTGAATCGTACCAGCATTTGCTCATATAATCTTACTAAAGAAGGAGCCATTTTCATTGTTACCATACCCACTGTTAAAATTAAGTCTGCCTGTCTGATGTTTTATCTAGGCGAGGCTCATTCAATGACGAGATCAAATCTCAATAGCCCGAAGAGATGCTTGTTCCTTTCTTTCTTTGATTTGAAACATCCCAGCGGCAAATCAAGTGCGGTGAATGCCTCTTTTTCCCCGGAAGTTGTCGGAATTATTCGTAATAAGATATTGGCTACAATTGAAAAGGCATCGGTACCAACCCCATTCTATAATTTTCAAAATCTCGCAAAAATGCAGCGTGGTTTTTCTCTAAAAACTCGGAAGGTTCCGCCAGAAATAGTTTGGGATTCAATCCGGTTTCAATATTTCCCATACGTAATCCTTTGTATAGACGTTGGGGCGGATGAACACTAA

Coding sequence (CDS)

ATGAGACCAAATCCAAAGGAGATCGTGGGATCAAAGTGGACGTTCAAAATTTCCATGGCCGATTGCATCCCGAGGACTTTCTTGATTGAAAAAGTAGCGTGGAAAAGTTCTTTGATTGGAAAGAACGAGACGAGGTATGCGAAGATGAAATTCCTGAGCACGGTGGAGTTGGGTTTAGCTTACGATGTTTTTGGAAGCCCTCGTCCAAATGAGTATTTTACAGAGAGCCGACAAGGAATTCCATTAATAACTGGCCGTTTTGATTCTTTGGAACAACTCGATGAATTTATGCGATGGTTGGCTGTTCACGGACTAGCTGTACCTATCGGTCAATATCAGCAATGCAATTCATCCAACGATAAACCTAATCCGAATTATAGAGCTATGACACAATCAAATCTGAACGAACAAAATGTTGAATTGAATCGTACCAGCATTTGCTCATATAATCTTACTAAAGAAGGAGCCATTTTCATTGTTACCATACCCACTGTTAAAATTAAGTCTGCCTGTCTGATGTTTTATCTAGGCGAGGCTCATTCAATGACGAGATCAAATCTCAATAGCCCGAAGAGATGCTTGTTCCTTTCTTTCTTTGATTTGAAACATCCCAGCGGCAAATCAAGTGCGGTGAATGCCTCTTTTTCCCCGGAAGTTGTCGGAATTATTCGTAATAAGATATTGGCTACAATTGAAAAGGCATCGGTACCAACCCCATTCTATAATTTTCAAAATCTCGCAAAAATGCAGCGTGGTTTTTCTCTAAAAACTCGGAAGGTTCCGCCAGAAATAGTTTGGGATTCAATCCGGTTTCAATATTTCCCATACGTAATCCTTTGTATAGACGTTGGGGCGGATGAACACTAA

Protein sequence

MRPNPKEIVGSKWTFKISMADCIPRTFLIEKVAWKSSLIGKNETRYAKMKFLSTVELGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMRWLAVHGLAVPIGQYQQCNSSNDKPNPNYRAMTQSNLNEQNVELNRTSICSYNLTKEGAIFIVTIPTVKIKSACLMFYLGEAHSMTRSNLNSPKRCLFLSFFDLKHPSGKSSAVNASFSPEVVGIIRNKILATIEKASVPTPFYNFQNLAKMQRGFSLKTRKVPPEIVWDSIRFQYFPYVILCIDVGADEH

Homology

[Close]

BLAST of Clc11G07732 vs. NCBI nr
Match: XP_027187174.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC113785018 [Cicer arietinum])

HSP 1 Score: 167.5 bits (423), Expect = 1.6e-37
Identity = 82/96 (85.42%), Postives = 86/96 (89.58%), Query Frame = 0


Query: 55  VELGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMRWLAVHGLAVPI----G 114
           V  GLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEF+RWLAVHGLAVP      
Sbjct: 38  VSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFIRWLAVHGLAVPTVLFWD 97

Query: 115 QYQQCNSSNDKPNPNYRAMTQSNLNEQNVELNRTSI 147
           +YQQC+SSNDKPNPNYRA TQSN NEQNVELNRTS+
Sbjct: 98  RYQQCSSSNDKPNPNYRATTQSNPNEQNVELNRTSL 133

[Close]

BLAST of Clc11G07732 vs. NCBI nr
Match: KAF1855882.1 (hypothetical protein Lal_00028302 [Lupinus albus])

HSP 1 Score: 167.2 bits (422), Expect = 2.1e-37
Identity = 82/96 (85.42%), Postives = 85/96 (88.54%), Query Frame = 0


Query: 55  VELGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMRWLAVHGLAVPI----G 114
           V  GLAYDVFGSPRPNEYFTESRQGIPLITGRFD LEQLDEF+RWLAVHGLAVP      
Sbjct: 38  VSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDPLEQLDEFIRWLAVHGLAVPTVSFWD 97

Query: 115 QYQQCNSSNDKPNPNYRAMTQSNLNEQNVELNRTSI 147
           QYQQC+SSNDKPNPNYRA TQSN NEQNVELNRTS+
Sbjct: 98  QYQQCSSSNDKPNPNYRATTQSNPNEQNVELNRTSL 133

[Close]

BLAST of Clc11G07732 vs. NCBI nr
Match: XP_034508898.1 (LOW QUALITY PROTEIN: cytochrome b559 subunit alpha-like [Ailuropoda melanoleuca])

HSP 1 Score: 160.6 bits (405), Expect = 2.0e-35
Identity = 80/96 (83.33%), Postives = 84/96 (87.50%), Query Frame = 0


Query: 55  VELGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMRWLAVHGLAVPI----G 114
           V  GLAYDVFGSPRPNEYFTE+RQGIPLITGRFD LEQLDEF+RWLAVHGLAVP      
Sbjct: 38  VSTGLAYDVFGSPRPNEYFTENRQGIPLITGRFDPLEQLDEFIRWLAVHGLAVPTVLFWD 97

Query: 115 QYQQCNSSNDKPNPNYRAMTQSNLNEQNVELNRTSI 147
           QYQQC+SSNDK N NYRAMTQSN NEQNVELNRTS+
Sbjct: 98  QYQQCSSSNDKLNLNYRAMTQSNPNEQNVELNRTSL 133

[Close]

BLAST of Clc11G07732 vs. NCBI nr
Match: AES88212.1 (cytochrome b559 subunit alpha [Medicago truncatula])

HSP 1 Score: 143.3 bits (360), Expect = 3.3e-30
Identity = 72/92 (78.26%), Postives = 75/92 (81.52%), Query Frame = 0


Query: 55  VELGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMRWLAVHGLAVPIGQYQQ 114
           V  GLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEF+RWL             Q
Sbjct: 38  VSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFIRWL-------------Q 97

Query: 115 CNSSNDKPNPNYRAMTQSNLNEQNVELNRTSI 147
           C+SSNDKPNPNYRA TQSN NEQNVELNRTS+
Sbjct: 98  CSSSNDKPNPNYRATTQSNPNEQNVELNRTSL 116

[Close]

BLAST of Clc11G07732 vs. NCBI nr
Match: KAF4396250.1 (hypothetical protein F8388_019796 [Cannabis sativa])

HSP 1 Score: 143.3 bits (360), Expect = 3.3e-30
Identity = 89/161 (55.28%), Postives = 101/161 (62.73%), Query Frame = 0


Query: 7   EIVGSKWTFKISMADCIP--RTFLIEKVAWKSSLIGKNETRYAKMKFLSTVELGLAYDVF 66
           E+  S  T + S+AD I   R ++I  +   S  I       A   F+ST   GLAYDVF
Sbjct: 77  ELKMSGSTGERSLADIITSIRDWVIHSITIPSLFI-------AGWLFVST---GLAYDVF 136

Query: 67  GSPRPNEYFTESRQGIPLITGRFDSLEQLDEF-------------------MRWLAVHGL 126
           GSPRPNEYFTESRQG+PLITGRFDSLEQLDEF                   +RWLAVHGL
Sbjct: 137 GSPRPNEYFTESRQGVPLITGRFDSLEQLDEFSRSFWEAQMTIDRTYPIFTVRWLAVHGL 196

Query: 127 AVPIGQYQQCNSSNDKPNPNYRAMTQSNLNEQNVELNRTSI 147
           AVP   +    SSNDKPNPN+RA TQ N NEQNVELNRTS+
Sbjct: 197 AVPTVSF--LGSSNDKPNPNHRATTQPNPNEQNVELNRTSL 225

[Close]

BLAST of Clc11G07732 vs. ExPASy Swiss-Prot
Match: Q6EW36 (Cytochrome b559 subunit alpha OS=Nymphaea alba OX=34301 GN=psbE PE=3 SV=3)

HSP 1 Score: 90.1 bits (222), Expect = 4.4e-17
Identity = 42/46 (91.30%), Postives = 42/46 (91.30%), Query Frame = 0


Query: 53 STVELGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMR 99
          S V  GLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEF R
Sbjct: 36 SFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSR 81

[Close]

BLAST of Clc11G07732 vs. ExPASy Swiss-Prot
Match: Q70XY9 (Cytochrome b559 subunit alpha OS=Amborella trichopoda OX=13333 GN=psbE PE=3 SV=3)

HSP 1 Score: 89.4 bits (220), Expect = 7.4e-17
Identity = 41/44 (93.18%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 55 VELGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMR 99
          V  GLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEF R
Sbjct: 38 VSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSR 81

[Close]

BLAST of Clc11G07732 vs. ExPASy Swiss-Prot
Match: P56779 (Cytochrome b559 subunit alpha OS=Arabidopsis thaliana OX=3702 GN=psbE PE=1 SV=4)

HSP 1 Score: 89.4 bits (220), Expect = 7.4e-17
Identity = 41/44 (93.18%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 55 VELGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMR 99
          V  GLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEF R
Sbjct: 38 VSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSR 81

[Close]

BLAST of Clc11G07732 vs. ExPASy Swiss-Prot
Match: P59702 (Cytochrome b559 subunit alpha OS=Atropa belladonna OX=33113 GN=psbE PE=3 SV=3)

HSP 1 Score: 89.4 bits (220), Expect = 7.4e-17
Identity = 41/44 (93.18%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 55 VELGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMR 99
          V  GLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEF R
Sbjct: 38 VSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSR 81

[Close]

BLAST of Clc11G07732 vs. ExPASy Swiss-Prot
Match: P69382 (Cytochrome b559 subunit alpha OS=Beta vulgaris OX=161934 GN=psbE PE=3 SV=2)

HSP 1 Score: 89.4 bits (220), Expect = 7.4e-17
Identity = 41/44 (93.18%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 55 VELGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMR 99
          V  GLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEF R
Sbjct: 38 VSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSR 81

[Close]

BLAST of Clc11G07732 vs. ExPASy TrEMBL
Match: A0A3Q7X043 (Cytochrome b559 subunit alpha OS=Cicer arietinum OX=3827 GN=LOC113785018 PE=3 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 7.9e-38
Identity = 82/96 (85.42%), Postives = 86/96 (89.58%), Query Frame = 0


Query: 55  VELGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMRWLAVHGLAVPI----G 114
           V  GLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEF+RWLAVHGLAVP      
Sbjct: 38  VSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFIRWLAVHGLAVPTVLFWD 97

Query: 115 QYQQCNSSNDKPNPNYRAMTQSNLNEQNVELNRTSI 147
           +YQQC+SSNDKPNPNYRA TQSN NEQNVELNRTS+
Sbjct: 98  RYQQCSSSNDKPNPNYRATTQSNPNEQNVELNRTSL 133

[Close]

BLAST of Clc11G07732 vs. ExPASy TrEMBL
Match: A0A6A5LB38 (Cytochrome b559 subunit alpha OS=Lupinus albus OX=3870 GN=Lal_00028302 PE=3 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.0e-37
Identity = 82/96 (85.42%), Postives = 85/96 (88.54%), Query Frame = 0


Query: 55  VELGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMRWLAVHGLAVPI----G 114
           V  GLAYDVFGSPRPNEYFTESRQGIPLITGRFD LEQLDEF+RWLAVHGLAVP      
Sbjct: 38  VSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDPLEQLDEFIRWLAVHGLAVPTVSFWD 97

Query: 115 QYQQCNSSNDKPNPNYRAMTQSNLNEQNVELNRTSI 147
           QYQQC+SSNDKPNPNYRA TQSN NEQNVELNRTS+
Sbjct: 98  QYQQCSSSNDKPNPNYRATTQSNPNEQNVELNRTSL 133

[Close]

BLAST of Clc11G07732 vs. ExPASy TrEMBL
Match: A0A0V0HJS1 (Cytochrome b559 subunit alpha OS=Solanum chacoense OX=4108 PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 3.1e-34
Identity = 83/116 (71.55%), Postives = 86/116 (74.14%), Query Frame = 0


Query: 55  VELGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEF------------------ 114
           V  GLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEF                  
Sbjct: 38  VSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSFXEALMTIDRTYPIF 97

Query: 115 -MRWLAVHGLAVP-----IGQYQQCNSSNDKPNPNYRAMTQSNLNEQNVELNRTSI 147
            +RWLAVHGLAVP       QYQQC+SSNDK NPNYRAMTQSN NEQNVELNRTS+
Sbjct: 98  TVRWLAVHGLAVPTVFFXXDQYQQCSSSNDKLNPNYRAMTQSNPNEQNVELNRTSL 153

[Close]

BLAST of Clc11G07732 vs. ExPASy TrEMBL
Match: G7JFY7 (Cytochrome b559 subunit alpha OS=Medicago truncatula OX=3880 GN=MTR_4g050850 PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.6e-30
Identity = 72/92 (78.26%), Postives = 75/92 (81.52%), Query Frame = 0


Query: 55  VELGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMRWLAVHGLAVPIGQYQQ 114
           V  GLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEF+RWL             Q
Sbjct: 38  VSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFIRWL-------------Q 97

Query: 115 CNSSNDKPNPNYRAMTQSNLNEQNVELNRTSI 147
           C+SSNDKPNPNYRA TQSN NEQNVELNRTS+
Sbjct: 98  CSSSNDKPNPNYRATTQSNPNEQNVELNRTSL 116

[Close]

BLAST of Clc11G07732 vs. ExPASy TrEMBL
Match: A0A7J6HPJ5 (Cytochrome b559 subunit alpha OS=Cannabis sativa OX=3483 GN=F8388_019796 PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.6e-30
Identity = 89/161 (55.28%), Postives = 101/161 (62.73%), Query Frame = 0


Query: 7   EIVGSKWTFKISMADCIP--RTFLIEKVAWKSSLIGKNETRYAKMKFLSTVELGLAYDVF 66
           E+  S  T + S+AD I   R ++I  +   S  I       A   F+ST   GLAYDVF
Sbjct: 77  ELKMSGSTGERSLADIITSIRDWVIHSITIPSLFI-------AGWLFVST---GLAYDVF 136

Query: 67  GSPRPNEYFTESRQGIPLITGRFDSLEQLDEF-------------------MRWLAVHGL 126
           GSPRPNEYFTESRQG+PLITGRFDSLEQLDEF                   +RWLAVHGL
Sbjct: 137 GSPRPNEYFTESRQGVPLITGRFDSLEQLDEFSRSFWEAQMTIDRTYPIFTVRWLAVHGL 196

Query: 127 AVPIGQYQQCNSSNDKPNPNYRAMTQSNLNEQNVELNRTSI 147
           AVP   +    SSNDKPNPN+RA TQ N NEQNVELNRTS+
Sbjct: 197 AVPTVSF--LGSSNDKPNPNHRATTQPNPNEQNVELNRTSL 225

[Close]

BLAST of Clc11G07732 vs. TAIR 10
Match: ATCG00580.1 (photosystem II reaction center protein E )

HSP 1 Score: 87.4 bits (215), Expect = 2.0e-17
Identity = 40/44 (90.91%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 55 VELGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMR 99
          V  GLAYDVFGSPRPNEYFTESRQGIPLITGRFD LEQLDEF R
Sbjct: 38 VSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDPLEQLDEFSR 81

The following BLAST results are available for this feature:

BLAST of Clc11G07732 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_027187174.1	1.6e-37	85.42	LOW QUALITY PROTEIN: uncharacterized protein LOC113785018 [Cicer arietinum]	[more]
KAF1855882.1	2.1e-37	85.42	hypothetical protein Lal_00028302 [Lupinus albus]	[more]
XP_034508898.1	2.0e-35	83.33	LOW QUALITY PROTEIN: cytochrome b559 subunit alpha-like [Ailuropoda melanoleuca]	[more]
AES88212.1	3.3e-30	78.26	cytochrome b559 subunit alpha [Medicago truncatula]	[more]
KAF4396250.1	3.3e-30	55.28	hypothetical protein F8388_019796 [Cannabis sativa]	[more]

BLAST of Clc11G07732 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6EW36	4.4e-17	91.30	Cytochrome b559 subunit alpha OS=Nymphaea alba OX=34301 GN=psbE PE=3 SV=3	[more]
Q70XY9	7.4e-17	93.18	Cytochrome b559 subunit alpha OS=Amborella trichopoda OX=13333 GN=psbE PE=3 SV=3	[more]
P56779	7.4e-17	93.18	Cytochrome b559 subunit alpha OS=Arabidopsis thaliana OX=3702 GN=psbE PE=1 SV=4	[more]
P59702	7.4e-17	93.18	Cytochrome b559 subunit alpha OS=Atropa belladonna OX=33113 GN=psbE PE=3 SV=3	[more]
P69382	7.4e-17	93.18	Cytochrome b559 subunit alpha OS=Beta vulgaris OX=161934 GN=psbE PE=3 SV=2	[more]

BLAST of Clc11G07732 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A3Q7X043	7.9e-38	85.42	Cytochrome b559 subunit alpha OS=Cicer arietinum OX=3827 GN=LOC113785018 PE=3 SV...	[more]
A0A6A5LB38	1.0e-37	85.42	Cytochrome b559 subunit alpha OS=Lupinus albus OX=3870 GN=Lal_00028302 PE=3 SV=1	[more]
A0A0V0HJS1	3.1e-34	71.55	Cytochrome b559 subunit alpha OS=Solanum chacoense OX=4108 PE=3 SV=1	[more]
G7JFY7	1.6e-30	78.26	Cytochrome b559 subunit alpha OS=Medicago truncatula OX=3880 GN=MTR_4g050850 PE=...	[more]
A0A7J6HPJ5	1.6e-30	55.28	Cytochrome b559 subunit alpha OS=Cannabis sativa OX=3483 GN=F8388_019796 PE=3 SV...	[more]

BLAST of Clc11G07732 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00580.1	2.0e-17	90.91	photosystem II reaction center protein E	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013082	Photosystem II cytochrome b559, alpha subunit, lumenal region	PFAM	PF00284	Cytochrom_B559a	coord: 59..96 e-value: 2.8E-20 score: 71.8
IPR037025	Photosystem II cytochrome b559, alpha subunit superfamily	GENE3D	1.20.5.860	Photosystem II cytochrome b559, alpha subunit	coord: 45..100 e-value: 1.4E-18 score: 68.4
None	No IPR available	PANTHER	PTHR33391	CYTOCHROME B559 SUBUNIT BETA-RELATED	coord: 55..98
None	No IPR available	PANTHER	PTHR33391:SF15	CYTOCHROME B559 SUBUNIT ALPHA	coord: 55..98
None	No IPR available	SUPERFAMILY	161045	Cytochrome b559 subunits	coord: 55..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G07732.1	Clc11G07732.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0019684	photosynthesis, light reaction
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009539	photosystem II reaction center
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0020037	heme binding
molecular_function	GO:0046872	metal ion binding