Clc11G07700 (gene) Watermelon (cordophanus) v2

Overview
NameClc11G07700
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionProtein Ycf2
LocationClcChr11: 7727673 .. 7731389 (+)
RNA-Seq ExpressionClc11G07700
SyntenyClc11G07700
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGGGTAGTATGGGATCTGTAGTAGGCGAGAAAATCACCCGTTTGATCGAGTATGCTACCAATCAATTTTTACCTCTTATTTTAGCGTGTGCTTCTGGAGGAGCACGCATGCAAGTAAATGGATCTGCGGGTTCACCAATCATTGATGGTTCTAGGACCGCTAAGCCCACGTTACATGCAATAGTACCTAGAATTACTACTGGAAAAATATATAAAAGATCATTGGGCCATGCGGGTTCTCCGTAATAATTATTGATACTCGAACTCATGCCTTATCGAGCATGTTATCCAATTTTAAAATTGGTTTATTCGGCAGCAGCAAATGCTAGTCACAATATGGGTTTCAACGAAAGAGATTTAGTCATTAGTAAAGCAGAAGTCAATCAAGGTACTACTGTGAAAAAATTAAAACCTCGAGAGGCGAAGGCTCTTTTGGTTGATTGCACGAGTTCGCCAGTCAATCCACCGTTTTCTTGCTTGGTGCGCTAGTGCGCCTGACTTAGTCGTAGGCGTTTTCTTCGCTGGTGACCATCTGTCAGAGAAAAAAGAACGAATGGATCTTGTAGGATTCCCGAGAAATTCTTCGATTTCTTCCGGAAGCGAATGATTATTCATCTGCTTCTCACGTTCCGTGAATAGCCGGGACATTGAGGAATATCCAGAAAATTAATCAGGAGCCACCTTTAAATCCGAAGGTTTCATCTCTTGTTGAAGGAAGGAGATAATGAAACCGCGAAGATAAGGAAGTCTATGGATATGATGCCGGAAATAGACCGATTTTATATCACCCTTCAATTCGAATTAGCAAAAGCAATGTCTCCTTGCATAATATGGATTCCAAACATTCATGATCTGGATGTGAATGAGTCGAATTACTTATCCCTTGGTCTATTAGTGAACTATCGATTGCATAAGATATGCCAAAACCACTGACTGGTCTTTCCAAACGGAACAACATAAAGAAAAAAAAAGAAGTCGTCGCGAGCCCTACGTTTGAAGCTTCAACACAGTCCTTAGTATTAGTAGCTCGTTGCTACAACTTCTCTTTGGCTAAGCCCACAGTAAACATATGATGAGCCCAAACAAGAAATCCAAGAACACCTATACTGATCATGGCATAAACCATGCCTAGATACCCGAAAACCGGTTTTCCCGAAAAAGTCGAAACGATATGACTTATGATACCGGATCCAGGCAGAATTAGGATGTAAACTTCAGGGTGCTTCTCTCTTCTACTAATATAAGCGGATGAATAGAAGAAAGGTGGACTATATCATCAACTTATTCCATTTGTCTAGGAAAGCTAGCCATGCTTTATGGTGAAGACTGTCAGGTTTAAATGCTTTGAGATCGTAAAGACTGTAATATTCCTCAATAAGGAAGAATCGTCGTGATTTATGACTTCGGAAAGTACTTGATTTGCATAAATGCAACTCTCATTTCATCATTTCTAGTTCAAATCCCTTATTGCCTAGTTCAACCACGAACCATCAAAGGTAGTCGACGAAGATGCGTAGCAGCAAACAGTCTTGGGCCCGAGGTAGGTGCTTTGTTTGTGAGCCGGAAATTCGAAGATTAGTGATCCCACCTTTTGTCTTGTTTAGGCATTTGGTGTCCTTTCTGCCGGCCTGCTTAGCGACAGAGCCACCCTCTTGGGGGTCAGTGAGGAGGGCAATCCCCCACTCCGGCGGTTTCCTTGTGTTAAGAATGGATACTTCTTGGTGTTTGCTGGAATTCCGACTTGGGGGTTGAATATTGAGTTCCGCTTAGGCTACGTGTTCTGTTTACGCGCTACTAAGCCGGCACACAGGATCTTAGACAGGTTTCGTCCCCTTTCGGGAACACCTTCTTACTAGTACGGGCTAAGCCTGATGCAAATAGACCGAAAAAAGAAGATATCGTTGGTCGATTCTTTATAGATGAGTTGTAGTCGCGGCCCGGCAAAATCCTTGTATAGCCTCTTCGATTTCTCGATAAAGAGAAATATGACCAACAGTGCTTCGAATGTATATACAAAGAATTTCTTTTTTTATACTTTTGACTATTAGATAGGACCCATAAATCTCATGATGGGTACCCAAAGATTCATAGTGAACTTCGATAGGGGCTTCTCTTGAAGCAATAACGCGTTGATCTAGTCGCCATCGGAGCCACAAAGGACTATCTAAATTGATCCTTTTCTGGCGATAAGCTCCAATTGCATCATAGGAATTACAAAAAAAGGGTTCTTTCGTATATTTATAGTTATTATTGTAAATTTTTTCATTTTTATGATTTTTGAGATCTTATTAACCAAAGAGATACGACTTTGCACTATCGTTAGTTCAGCACCAATCAAAAATCCCCAAGGAATTCCAAGAATTCTTGTTATACGCTCGTTCCAACCCTCAATTGGAGTATTCATCTCCATCTCTCTTAACTAACGAAAAATCGAAATGCCCCTTTTTTGGAGAATTTTTTTTTGAGAGAAATGGTTTTCTCCGCTATTTGAAGAATTTCGTTTGCATCTTTTGACGCATGCTCTTTGTAAAGCCAAATCTGGTTTGCGCGGTAGAGAATACCTAGGGGCGCGAGACAACTCTCTCTAAGGAACTCGGCAAAATAGCCCCGTAACTTCGCAGAGACAAAATGGAGGACTGGTGCCAACAGTTCATCACGGAAGAAAGGACTCACTGAGCCGAGATCACTAACTAATACTAATCTAATACTAATAGAATAGAAAAGAACTGTCTTTTCTGTATACTTTCCCCGGTTCTGTTGCTACCGCGGGCTGGGTTCGATTTCCGGGCCGGGCGGGAGGTGAAGGCCATAAGAGAAGATTCCCCGGTAAGGAAGAGAAGAAAAAGGTGTTGTCATCGAGATCGACCTGTTTCCCGAGGCATTGGAAATCCAGACCGGCTCAGAGAATCACTAGCGCTATTTAGCCCGGTATTTTTCATGATCTATATTATTAATGAATCTGTAGAATAGATACTCATACAAATTCATGATGTGCCAAGAACCAGATTTGAACTGGTGACACGAGGATTTTCAGTCCTCTGCTCTACCAACTGAGCTATCCCGGCCATTTCCGACACATTATCCTTATTTTAATAGATGACTTTGGTCTATGTCAATTGTAAATAAGAAAAAAAGTATTCCAAAGTCTTCTTTTTGAAGATCCGGCTAGCACAACGAAAGACAACCATGAGGTAAAGAGTCTACGATCTACTATCCCTTGTGCACGGTAGATAGCTATGAATTTGTTCTTCATTGAGTTTTCCTTCGTCTTTCAGGCCTTTTCCTAGCCACTCAAACTTTTGAAAGTCGAAAACCCAGCGGTATTCGAATATAGCTACTCTCCTCTCCGGGCCCATTATTTGCCCTGAAAAAGCCGTAGCAAAGGGCGATCGGGATCTCCGTTTTTCAAATTATCCTGAATGAGCAGAGCACCATTGAGAGAAAAAGATGTCAAGCGGGGAATGAGAAAGAGAGATGCCTCTCGACTTTGGATCTTAGCACCCCAAAAGTCTGTCTGTACAAACGATCTAGGCCTGTATTCGGAGTTTCCCTGGGGTTGGTAAGGCGAAATGGGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGAAGCACTTTCGAGTGTGCGCTTTCGTTTTCGAATGTGTCGTTCAGCCTCACGAGTCTACAAGCCTTTCTCATTCCAGTGCTCGCCTTTTAG

mRNA sequence

ATGGGGGGTAGTATGGGATCTGTAGTAGGCGAGAAAATCACCCGTTTGATCGAGTATGCTACCAATCAATTTTTACCTCTTATTTTAGCGTGTGCTTCTGGAGGAGCACGCATGCAAGTAAATGGATCTGCGGGTTCACCAATCATTGATGGTTCTAGGACCGCTAAGCCCACGTTACATGCAATAGTACCTAGAATTACTACTGGAAAAATATATAAAAGATCATTGGGCCATGCGGCAGCAAATGCTAGTCACAATATGGGTTTCAACGAAAGAGATTTAGTCATTAGTAAAGCAGAAGTCAATCAAGGTACTACTGTGAAAAAATTAAAACCTCGAGAGGCGAAGGCTCTTTTGGTTGATTGCACGAGTTCGCCAGTCAATCCACCGTTTTCTTGCTTGGATTCCCGAGAAATTCTTCGATTTCTTCCGGAAGCGAATGATTATTCATCTGCTTCTCACGAAGGAGATAATGAAACCGCGAAGATAAGGAAGTCTATGGATATGATGCCGGAAATAGACCGATTTTATATCACCCTTCAATTCGAATTAGCAAAAGCAATGTCTCCTTGCATAATATGGATTCCAAACATTCATGATCTGGATGTGAATGAGTCGAATTACTTATCCCTTGGAAAGCTAGCCATGCTTTATGGTGAAGACTGTCAGGCATTTGGTGTCCTTTCTGCCGGCCTGCTTAGCGACAGAGCCACCCTCTTGGGGGTCAGTGAGGAGGGCAATCCCCCACTCCGGCGGTTTCCTTGTGTTAAGAATGGATACTTCTTGGTGTTTGCTGGAATTCCGACTTGGGGGTTGAATATTGAGTTCCGCTTAGGCTACGTGTTCTGTTTACGCGCTACTAAGCCGGCACACAGGATCTTAGACAGAATAGAAAAGAACTGTCTTTTCTGTATACTTTCCCCGGTTCTGTTGCTACCGCGGGCTGGGTTCGATTTCCGGGCCGGGCGGGAGGTGAAGGCCATAAGAGAAGATTCCCCGGTAAGGAAGAGAAGAAAAAGGTGTTGTCATCGAGATCGACCTGTTTCCCGAGGCATTGGAAATCCAGACCGGCTCAGAGAATCACTAGCGCTATTTAGCCCGGCCTGTATTCGGAGTTTCCCTGGGGTTGGTAAGGCGAAATGGGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGAAGCACTTTCGAGTGTGCGCTTTCGTTTTCGAATGTGTCGTTCAGCCTCACGAGTCTACAAGCCTTTCTCATTCCAGTGCTCGCCTTTTAG

Coding sequence (CDS)

ATGGGGGGTAGTATGGGATCTGTAGTAGGCGAGAAAATCACCCGTTTGATCGAGTATGCTACCAATCAATTTTTACCTCTTATTTTAGCGTGTGCTTCTGGAGGAGCACGCATGCAAGTAAATGGATCTGCGGGTTCACCAATCATTGATGGTTCTAGGACCGCTAAGCCCACGTTACATGCAATAGTACCTAGAATTACTACTGGAAAAATATATAAAAGATCATTGGGCCATGCGGCAGCAAATGCTAGTCACAATATGGGTTTCAACGAAAGAGATTTAGTCATTAGTAAAGCAGAAGTCAATCAAGGTACTACTGTGAAAAAATTAAAACCTCGAGAGGCGAAGGCTCTTTTGGTTGATTGCACGAGTTCGCCAGTCAATCCACCGTTTTCTTGCTTGGATTCCCGAGAAATTCTTCGATTTCTTCCGGAAGCGAATGATTATTCATCTGCTTCTCACGAAGGAGATAATGAAACCGCGAAGATAAGGAAGTCTATGGATATGATGCCGGAAATAGACCGATTTTATATCACCCTTCAATTCGAATTAGCAAAAGCAATGTCTCCTTGCATAATATGGATTCCAAACATTCATGATCTGGATGTGAATGAGTCGAATTACTTATCCCTTGGAAAGCTAGCCATGCTTTATGGTGAAGACTGTCAGGCATTTGGTGTCCTTTCTGCCGGCCTGCTTAGCGACAGAGCCACCCTCTTGGGGGTCAGTGAGGAGGGCAATCCCCCACTCCGGCGGTTTCCTTGTGTTAAGAATGGATACTTCTTGGTGTTTGCTGGAATTCCGACTTGGGGGTTGAATATTGAGTTCCGCTTAGGCTACGTGTTCTGTTTACGCGCTACTAAGCCGGCACACAGGATCTTAGACAGAATAGAAAAGAACTGTCTTTTCTGTATACTTTCCCCGGTTCTGTTGCTACCGCGGGCTGGGTTCGATTTCCGGGCCGGGCGGGAGGTGAAGGCCATAAGAGAAGATTCCCCGGTAAGGAAGAGAAGAAAAAGGTGTTGTCATCGAGATCGACCTGTTTCCCGAGGCATTGGAAATCCAGACCGGCTCAGAGAATCACTAGCGCTATTTAGCCCGGCCTGTATTCGGAGTTTCCCTGGGGTTGGTAAGGCGAAATGGGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGAAGCACTTTCGAGTGTGCGCTTTCGTTTTCGAATGTGTCGTTCAGCCTCACGAGTCTACAAGCCTTTCTCATTCCAGTGCTCGCCTTTTAG

Protein sequence

MGGSMGSVVGEKITRLIEYATNQFLPLILACASGGARMQVNGSAGSPIIDGSRTAKPTLHAIVPRITTGKIYKRSLGHAAANASHNMGFNERDLVISKAEVNQGTTVKKLKPREAKALLVDCTSSPVNPPFSCLDSREILRFLPEANDYSSASHEGDNETAKIRKSMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQAFGVLSAGLLSDRATLLGVSEEGNPPLRRFPCVKNGYFLVFAGIPTWGLNIEFRLGYVFCLRATKPAHRILDRIEKNCLFCILSPVLLLPRAGFDFRAGREVKAIREDSPVRKRRKRCCHRDRPVSRGIGNPDRLRESLALFSPACIRSFPGVGKAKWGHPSPLSALPRAIDIIRSTFECALSFSNVSFSLTSLQAFLIPVLAF
Homology
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BLAST of Clc11G07700 vs. NCBI nr
Match: YP_008994333.1 (hypothetical chloroplast RF21 [Melianthus villosus] >YP_008994347.1 hypothetical chloroplast RF21 [Melianthus villosus] >AGS13051.1 hypothetical chloroplast RF21 [Melianthus villosus] >AGS13067.1 hypothetical chloroplast RF21 [Melianthus villosus])

HSP 1 Score: 110.5 bits (275), Expect = 3.5e-20
Identity = 59/93 (63.44%), Postives = 65/93 (69.89%), Query Frame = 0 

Query: 135  DSREILRFLPEANDYSSASHEGDNE----TAKIRKSMDMMPEIDRFYITLQFELAKAMSP 194
            DS +I     +A+D   AS + D E    T     +MDMMPEIDRFYITLQFELAKAMSP
Sbjct: 1700 DSDDIDDIDIDASDDIDASDDIDTELELLTMMNALTMDMMPEIDRFYITLQFELAKAMSP 1759

Query: 195  CIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQ 224
            CIIWIPNIHDLDVNESNYLSLG L      DC+
Sbjct: 1760 CIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCE 1792

[Close]
BLAST of Clc11G07700 vs. NCBI nr
Match: QXE40064.1 (Ycf2 [Cnidoscolus aconitifolius] >QXE40082.1 Ycf2 [Cnidoscolus aconitifolius])

HSP 1 Score: 109.8 bits (273), Expect = 6.0e-20
Identity = 55/98 (56.12%), Postives = 64/98 (65.31%), Query Frame = 0 

Query: 166  SMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQAF 225
            +MDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLG L      DC+  
Sbjct: 1720 TMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERC 1779

Query: 226  GVLSAGLLSDRATLLGVSEEGNPPLRRFPCVKNGYFLV 264
               +  +++       V      P +   C+K   FL+
Sbjct: 1780 STRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRFLI 1817

[Close]
BLAST of Clc11G07700 vs. NCBI nr
Match: AQU64636.1 (Ycf2 [Camptotheca acuminata] >AQU64637.1 Ycf2 [Camptotheca acuminata] >ARJ37131.1 ycf2 [Camptotheca acuminata] >ARJ37132.1 ycf2 [Camptotheca acuminata] >ATN40478.1 Ycf2 [Camptotheca acuminata])

HSP 1 Score: 109.4 bits (272), Expect = 7.8e-20
Identity = 54/79 (68.35%), Postives = 60/79 (75.95%), Query Frame = 0 

Query: 145  EANDYSSASHEGDNETAKIRKSMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVN 204
            +A+D    S + D +T     +MDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVN
Sbjct: 1688 DASDDIDDSDDRDLDTELELLTMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVN 1747

Query: 205  ESNYLSLGKLAMLYGEDCQ 224
            ESNYLSLG L      DC+
Sbjct: 1748 ESNYLSLGLLVNHLSRDCE 1766

[Close]
BLAST of Clc11G07700 vs. NCBI nr
Match: YP_009569725.1 (hypothetical protein RF2 [Bougainvillea spectabilis] >YP_009569743.1 hypothetical protein RF2 [Bougainvillea spectabilis] >YP_009755290.1 Ycf2 [Bougainvillea glabra] >YP_009755308.1 Ycf2 [Bougainvillea glabra] >YP_010126730.1 hypothetical protein RF2 [Bougainvillea hybrid cultivar] >YP_010126748.1 hypothetical protein RF2 [Bougainvillea hybrid cultivar] >QTK21973.1 hypothetical protein RF2 [Bougainvillea sp. SJM2] >QTK22145.1 hypothetical protein RF2 [Bougainvillea peruviana] >QBC66761.1 hypothetical protein RF2 [Bougainvillea spectabilis] >QBC66762.1 hypothetical protein RF2 [Bougainvillea spectabilis] >QHF16981.1 Ycf2 [Bougainvillea spectabilis])

HSP 1 Score: 109.4 bits (272), Expect = 7.8e-20
Identity = 54/98 (55.10%), Postives = 65/98 (66.33%), Query Frame = 0 

Query: 166  SMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQAF 225
            +MDMMPEID+FYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLG L      DC+ +
Sbjct: 1610 TMDMMPEIDQFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERW 1669

Query: 226  GVLSAGLLSDRATLLGVSEEGNPPLRRFPCVKNGYFLV 264
               +  +++       V      P +   C+K   FL+
Sbjct: 1670 STRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRFLI 1707

[Close]
BLAST of Clc11G07700 vs. NCBI nr
Match: YP_010145671.1 (Ycf2 [Mallotus japonicus] >YP_010145684.1 Ycf2 [Mallotus japonicus] >QQO79523.1 Ycf2 [Mallotus japonicus] >QQO79536.1 Ycf2 [Mallotus japonicus])

HSP 1 Score: 109.0 bits (271), Expect = 1.0e-19
Identity = 50/58 (86.21%), Postives = 52/58 (89.66%), Query Frame = 0 

Query: 166  SMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQ 224
            +MDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLG LA     DC+
Sbjct: 1726 TMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGLLANYLSRDCE 1783

[Close]
BLAST of Clc11G07700 vs. ExPASy Swiss-Prot
Match: Q49KT6 (Protein Ycf2 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.9e-22
Identity = 49/58 (84.48%), Postives = 51/58 (87.93%), Query Frame = 0 

Query: 166  SMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQ 224
            +MDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLG L      DC+
Sbjct: 1708 TMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCE 1765

[Close]
BLAST of Clc11G07700 vs. ExPASy Swiss-Prot
Match: Q09WV7 (Protein Ycf2 OS=Morus indica OX=248361 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.9e-22
Identity = 49/58 (84.48%), Postives = 51/58 (87.93%), Query Frame = 0 

Query: 166  SMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQ 224
            +MDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLG L      DC+
Sbjct: 1713 TMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCE 1770

[Close]
BLAST of Clc11G07700 vs. ExPASy Swiss-Prot
Match: Q14F97 (Protein Ycf2 OS=Populus alba OX=43335 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.9e-22
Identity = 49/58 (84.48%), Postives = 51/58 (87.93%), Query Frame = 0 

Query: 166  SMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQ 224
            +MDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLG L      DC+
Sbjct: 1710 TMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCE 1767

[Close]
BLAST of Clc11G07700 vs. ExPASy Swiss-Prot
Match: A4GYV4 (Protein Ycf2 OS=Populus trichocarpa OX=3694 GN=ycf2-1 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.9e-22
Identity = 49/58 (84.48%), Postives = 51/58 (87.93%), Query Frame = 0 

Query: 166  SMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQ 224
            +MDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLG L      DC+
Sbjct: 1713 TMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCE 1770

[Close]
BLAST of Clc11G07700 vs. ExPASy Swiss-Prot
Match: Q0ZIV6 (Protein Ycf2 OS=Vitis vinifera OX=29760 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.9e-22
Identity = 49/58 (84.48%), Postives = 51/58 (87.93%), Query Frame = 0 

Query: 166  SMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQ 224
            +MDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLG L      DC+
Sbjct: 1728 TMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCE 1785

[Close]
BLAST of Clc11G07700 vs. ExPASy TrEMBL
Match: V9NYF4 (Protein Ycf2 OS=Melianthus villosus OX=377280 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.7e-20
Identity = 59/93 (63.44%), Postives = 65/93 (69.89%), Query Frame = 0 

Query: 135  DSREILRFLPEANDYSSASHEGDNE----TAKIRKSMDMMPEIDRFYITLQFELAKAMSP 194
            DS +I     +A+D   AS + D E    T     +MDMMPEIDRFYITLQFELAKAMSP
Sbjct: 1700 DSDDIDDIDIDASDDIDASDDIDTELELLTMMNALTMDMMPEIDRFYITLQFELAKAMSP 1759

Query: 195  CIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQ 224
            CIIWIPNIHDLDVNESNYLSLG L      DC+
Sbjct: 1760 CIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCE 1792

[Close]
BLAST of Clc11G07700 vs. ExPASy TrEMBL
Match: A0A7T1NLZ3 (Uncharacterized protein OS=Bougainvillea hybrid cultivar OX=2259726 GN=ycf2 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.8e-20
Identity = 54/98 (55.10%), Postives = 65/98 (66.33%), Query Frame = 0 

Query: 166  SMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQAF 225
            +MDMMPEID+FYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLG L      DC+ +
Sbjct: 1610 TMDMMPEIDQFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERW 1669

Query: 226  GVLSAGLLSDRATLLGVSEEGNPPLRRFPCVKNGYFLV 264
               +  +++       V      P +   C+K   FL+
Sbjct: 1670 STRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRFLI 1707

[Close]
BLAST of Clc11G07700 vs. ExPASy TrEMBL
Match: A0A411JNX0 (Protein Ycf2 OS=Bougainvillea spectabilis OX=146096 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.8e-20
Identity = 54/98 (55.10%), Postives = 65/98 (66.33%), Query Frame = 0 

Query: 166  SMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQAF 225
            +MDMMPEID+FYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLG L      DC+ +
Sbjct: 1610 TMDMMPEIDQFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERW 1669

Query: 226  GVLSAGLLSDRATLLGVSEEGNPPLRRFPCVKNGYFLV 264
               +  +++       V      P +   C+K   FL+
Sbjct: 1670 STRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRFLI 1707

[Close]
BLAST of Clc11G07700 vs. ExPASy TrEMBL
Match: A0A1S6PRX3 (Protein Ycf2 OS=Camptotheca acuminata OX=16922 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.8e-20
Identity = 54/79 (68.35%), Postives = 60/79 (75.95%), Query Frame = 0 

Query: 145  EANDYSSASHEGDNETAKIRKSMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVN 204
            +A+D    S + D +T     +MDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVN
Sbjct: 1688 DASDDIDDSDDRDLDTELELLTMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVN 1747

Query: 205  ESNYLSLGKLAMLYGEDCQ 224
            ESNYLSLG L      DC+
Sbjct: 1748 ESNYLSLGLLVNHLSRDCE 1766

[Close]
BLAST of Clc11G07700 vs. ExPASy TrEMBL
Match: A0A6G9DY74 (Protein Ycf2 OS=Bougainvillea glabra OX=3541 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.8e-20
Identity = 54/98 (55.10%), Postives = 65/98 (66.33%), Query Frame = 0 

Query: 166  SMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQAF 225
            +MDMMPEID+FYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLG L      DC+ +
Sbjct: 1610 TMDMMPEIDQFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERW 1669

Query: 226  GVLSAGLLSDRATLLGVSEEGNPPLRRFPCVKNGYFLV 264
               +  +++       V      P +   C+K   FL+
Sbjct: 1670 STRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRFLI 1707

[Close]
BLAST of Clc11G07700 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 100.1 bits (248), Expect = 4.4e-21
Identity = 46/58 (79.31%), Postives = 50/58 (86.21%), Query Frame = 0 

Query: 166  SMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQ 224
            +MDMM EIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNES+YL+LG L      DC+
Sbjct: 1722 TMDMMLEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESSYLALGLLVNSLSRDCE 1779

[Close]
BLAST of Clc11G07700 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 100.1 bits (248), Expect = 4.4e-21
Identity = 46/58 (79.31%), Postives = 50/58 (86.21%), Query Frame = 0 

Query: 166  SMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGKLAMLYGEDCQ 224
            +MDMM EIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNES+YL+LG L      DC+
Sbjct: 1722 TMDMMLEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESSYLALGLLVNSLSRDCE 1779

[Close]
BLAST of Clc11G07700 vs. TAIR 10
Match: ATCG00500.1 (acetyl-CoA carboxylase carboxyl transferase subunit beta )

HSP 1 Score: 74.3 bits (181), Expect = 2.6e-13
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 1   MGGSMGSVVGEKITRLIEYATNQFLPLILACASGGARMQ 40
           MGGSMGSVVGEKITRLIEYATNQ LPLIL C+SGGARMQ
Sbjct: 332 MGGSMGSVVGEKITRLIEYATNQCLPLILVCSSGGARMQ 370

[Close]
BLAST of Clc11G07700 vs. TAIR 10
Match: ATCG00810.1 (ribosomal protein L22 )

HSP 1 Score: 60.1 bits (144), Expect = 5.1e-09
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 0 

Query: 79  AAANASHNMGFNERDLVISKAEVNQGTTVKKLKPR 114
           AAANASHN GF E +LVISKAEVNQG TVKKLKPR
Sbjct: 64  AAANASHNKGFKETNLVISKAEVNQGNTVKKLKPR 98

The following BLAST results are available for this feature:
BLAST of Clc11G07700 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_008994333.13.5e-2063.44hypothetical chloroplast RF21 [Melianthus villosus] >YP_008994347.1 hypothetical... [more]
QXE40064.16.0e-2056.12Ycf2 [Cnidoscolus aconitifolius] >QXE40082.1 Ycf2 [Cnidoscolus aconitifolius][more]
AQU64636.17.8e-2068.35Ycf2 [Camptotheca acuminata] >AQU64637.1 Ycf2 [Camptotheca acuminata] >ARJ37131.... [more]
YP_009569725.17.8e-2055.10hypothetical protein RF2 [Bougainvillea spectabilis] >YP_009569743.1 hypothetica... [more]
YP_010145671.11.0e-1986.21Ycf2 [Mallotus japonicus] >YP_010145684.1 Ycf2 [Mallotus japonicus] >QQO79523.1 ... [more]
BLAST of Clc11G07700 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q49KT63.9e-2284.48Protein Ycf2 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ycf2-A PE=3 SV=1[more]
Q09WV73.9e-2284.48Protein Ycf2 OS=Morus indica OX=248361 GN=ycf2-A PE=3 SV=1[more]
Q14F973.9e-2284.48Protein Ycf2 OS=Populus alba OX=43335 GN=ycf2-A PE=3 SV=1[more]
A4GYV43.9e-2284.48Protein Ycf2 OS=Populus trichocarpa OX=3694 GN=ycf2-1 PE=3 SV=1[more]
Q0ZIV63.9e-2284.48Protein Ycf2 OS=Vitis vinifera OX=29760 GN=ycf2-A PE=3 SV=1[more]
BLAST of Clc11G07700 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
V9NYF41.7e-2063.44Protein Ycf2 OS=Melianthus villosus OX=377280 GN=ycf2 PE=3 SV=1[more]
A0A7T1NLZ33.8e-2055.10Uncharacterized protein OS=Bougainvillea hybrid cultivar OX=2259726 GN=ycf2 PE=4... [more]
A0A411JNX03.8e-2055.10Protein Ycf2 OS=Bougainvillea spectabilis OX=146096 GN=ycf2 PE=3 SV=1[more]
A0A1S6PRX33.8e-2068.35Protein Ycf2 OS=Camptotheca acuminata OX=16922 GN=ycf2 PE=3 SV=1[more]
A0A6G9DY743.8e-2055.10Protein Ycf2 OS=Bougainvillea glabra OX=3541 GN=ycf2 PE=3 SV=1[more]
BLAST of Clc11G07700 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00860.14.4e-2179.31Chloroplast Ycf2;ATPase, AAA type, core [more]
ATCG01280.14.4e-2179.31Chloroplast Ycf2;ATPase, AAA type, core [more]
ATCG00500.12.6e-1392.31acetyl-CoA carboxylase carboxyl transferase subunit beta [more]
ATCG00810.15.1e-0985.71ribosomal protein L22 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.90.226.10coord: 1..86
e-value: 9.7E-13
score: 49.8
NoneNo IPR availablePANTHERPTHR33078PROTEIN YCF2-RELATEDcoord: 167..223
NoneNo IPR availablePANTHERPTHR33078:SF55PROTEIN YCF2coord: 167..223
IPR011762Acetyl-coenzyme A carboxyltransferase, N-terminalPROSITEPS50980COA_CT_NTERcoord: 1..42
score: 16.189577
IPR029045ClpP/crotonase-like domain superfamilySUPERFAMILY52096ClpP/crotonasecoord: 1..67
IPR036394Ribosomal protein L22/L17 superfamilySUPERFAMILY54843Ribosomal protein L22coord: 70..113

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc11G07700.1Clc11G07700.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005840 ribosome
molecular_function GO:0005524 ATP binding
molecular_function GO:0016887 ATP hydrolysis activity
molecular_function GO:0003735 structural constituent of ribosome