Clc11G07600 (gene) Watermelon (cordophanus) v2

Overview
NameClc11G07600
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionCytochrome c oxidase subunit 1
LocationClcChr11: 7702952 .. 7706244 (-)
RNA-Seq ExpressionClc11G07600
SyntenyClc11G07600
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGACCGAAAGGCGTGGTCCAAGAGAAGGAGATGACAGCAATAGTGCACTACTTGAGAACGTGGAGGACAAATATGAAAATAAGGGCCTCCATTCGGAAAATTTGTGAAAAATGTCGCCTGATCCGTAGGCGGAGACGAATTATGGTAATTTGTTCCAATCCGAGACATAAACAAAGACAAGGATAATCTTTATAAAAAAAGGGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGTCAAGTAAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACTGCAGGGCATAGAGGGGGAGGTCACATGCATTTCTTAGGGCTTTCGGGTATGCCACGTCGCATTCCTGATTATCCAGATGCTTACGCTGGATGGAATGCCCTTAGCAGTTTTGGCTCTTATATATCCGTAGTTGGGATTCGTCGTTTCTTCGTGGTCGTAACAACCACTTCAAGCAGTGGAAATAACAAAAGATGTGCTCCAAGTCCTTGGGCTGTTGAACAGAATTCAACCACACTGGAATGGATGGTACAAAGTCCTCCAGCTTTTCATACTTTTGGAGAACTTCCTGCTATCAAGGAGACGAAAAGCTATGTGAAGTAAAAGAATAAAAAGTCGCCGACTGCTACTAAGAACCTAACAGAACTTTTCAAAATGTGGGTTCTAAAACCACTTGTGTAGGTCGGGGTTGAGAATTGGGGGGCCAACGAGGCTGGGGCCTGATTTTCCAGCAATGACCGGTCAAGGTCAATCAAAATGGGGATTCACAGATGATTCTCAGCATAGAAGAGATCTTAACAAGTCTGATCACCATCTCTAGAAGGATTGAACGTCGGATTGATCATCGACTCAACATCTATTATCTTGCCACTTCACATTACAACATGTCTCCTGAAAGGTCAACAAAGAGCGCCTCCCTCCACACTAAACCGAAAAATCGGACCCCCAGCAGCTCCTTCTTTATTTAGAATTCACACAACCGATATGCGAAAGGAGATCTCATCTATTTTCTTTGTGTCGAGCAGCTTGCCAGAAAGTTCTCTCTTTATGCAGCATCCAGATGGAATTGAATCCGTGTTATCAAAGGATTTCCTGCAATTATTTCTAGTATGGAATGAGTCAATCATCTACTTTGGTATCTTATTGAACAAAAATGGTGATATTGTTCCTCCATTGATCAAGAATTTCGATTTTTGGGAAGTATCAGCGAGGGGAAGGGGGGGGGGGGGGGAAGGGAAGCGAAGCTTAGCGAGCTTTCCGCCGGCCGACCACTACATAAGCCACTGGCGGAGAAAGCTCGAAGAGCTTGCATCATCATGGTGGTCCTCCGAAAATGTAGTACTGCCGAATTCCGGGATGCTAGACTTCCGTATGCGGGCACAAGCACCTGAGCAACAAGAGCCTGATATTGTGAGTAACTCTGGACCTGAGTCAAAAAAATCAGCTACACGAAGCCCTCCTGTCAGAAAAAAAAGCCCAAGGCCCGGCTATACATACATTTTCAAAAAAAAACTGTCCAAGGCTAATTCTTTTAGGTCTTTCTTCACAATAATTATGCTGATAATTATGATGCAGAAAATGCCAATTCAAATTAAATGTATTGAAAACGATGTTACTGTATGGATCGGAATTAAAAATCCCCCCAGGACCAAGAAATTACCCGACCCCGTATATCTGTAACAGTCACAATTGTATTGTTGAAACTTGCTTGAACATGAATAACGCCCTTTGGTATTCTACGCGTACTTTTACGTGAGCTAATACGTCCATTTTTACGTGAACCGATTCTTGGTATGGGTTTTGCCATATTTTACCATCTCATAAATCTAAGTCAGAGATATATGGATATATCCATTTCATGTCAAAACGGATCCTTTAATTGATTTTTATGTGTATATTGTGGGTGGCCTTTAGGGGTCCTTTTTTTATAAAGATTATCCTTGTCTTTTTTTATGTCTAGGATTGGAACAAATTACCATAATTCGTCTCCGCCTACGGATCAGGCGACATTTTTCACAAATTTTCCGAATGGAGGCCCTTATTTTCATATTTGTCATTCCTTACCTTAATTCCGAATCTACTTATTGGAAGAAAATAAGTTTCTTTAAATTTTCTATTTCGAATTGTATCCCTACAAAAAAAGAATATTGCCCGTGAAAAGACTACTTCACCTAATCCTTTGTTTCGTAGTCTCTAAATTATACGCCCTTTGGTTCTGGTTGAATCGTAACAACTTACTGAAAGTTTGACTCTCTATGACCTAGTATATGGATAAAACTATGTCGAATCCTTCCTGAAACGTAAACTAGAATTGGATCCTCATTATCTAAACAAACCCAAAACATACCATTGGTAAGTGATTCAGTAATTAAACCTTCAGAACTCCTTTTTTGTTCTTTCATTCCAGATGAAACATCTTTCAAAGTATCAATTAATGAAGGGGGAGTGGTATTAGAAACCTACCTCTTCTCTTTTTTTTTTTTTTACAAATAGGGAAGTTCTGTGTATAATTCGAATATCATAAAGATTACCATATATAACACAAAATTTCGCCGCCGATTCCCTGTAGTCGAGCTTCTCGGTCTGTCATTATACCCCGAGAAGTAGAAAGAATTACAATGCCCATTCCGCCTAAAATTCTAGGAATTTGTTGATAGTTAGAATATATTCGGAGACCAGGTCGACTGATCTGTTTTAAATTTAAAATCGTTTTATATGGTCCTTTCCTATTTCTTCTATGTCGTAGGGTTAAAACCCAAAAATCCTTGTTGCTTTCCCGATGTTTCCGTACGTTTTCAATAAAACCTTCTCGTAAAAGTATTTTAACAATGTTTTCGGTGATGTTAGTAGATGGTATTCGAACCATTCCTTTTCTATTCATGTCAGCATTGCGAATAGAGGTTATTATGTTAGCAATAGTGTCCTTACCCATGATAAACAAAATTATTGGTTACTTTAAATTTTGATCTAATCAACAGTCTTTTTTATTAAATAGTTATGAATTTAAAAAGGTATATACGTGATACACAATCTACTAATTAATTTCATTCAAATACTATAACTATCTCACGGTCTCATCTTATAATACTTCAGGTGCTAATGAAATTCATGAATGGGCAATCCGAGAGGCCTCAAAAGCGATTCGCTTATGAATCTCCTATTGAAGAGTTATACTATGATCGCTCAGTGGTCCCCATGGAGAAGCATTCAGCCCTTGGAATTTCATAA

mRNA sequence

ATGAGACCGAAAGGCGTGGTCCAAGAGAAGGAGATGACAGCAATAGTGCACTACTTGAGAACGTGGAGGACAAATATGAAAATAAGGGCCTCCATTCGGAAAATTTGTGAAAAATGTCGCCTGATCCGTAGGCGGAGACGAATTATGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACTGCAGGGCATAGAGGGGGAGGTCACATGCATTTCTTAGGGCTTTCGGGTATGCCACGTCGCATTCCTGATTATCCAGATGCTTACGCTGGATGGAATGCCCTTAGCAGTTTTGGCTCTTATATATCCGTAGTTGGGATTCGTCGTTTCTTCGTGGTCGTAACAACCACTTCAAGCAGTGGAAATAACAAAAGATGTGCTCCAAGTCCTTGGGCTGTTGAACAGAATTCAACCACACTGGAATGGATGGTACAAAGTCCTCCAGCTTTTCATACTTTTGGAGAACTTCCTGCTATCAAGGAGACGAAAAGCTATGTGAAGTCGGGGTTGAGAATTGGGGGGCCAACGAGGCTGGGGCCTGATTTTCCAGCAATGACCGGTCAAGAAGGATTGAACGTCGGATTGATCATCGACTCAACATCTATTATCTTGCCACTTCACATTACAACATGTCTCCTGAAAGGTCAACAAAGAGCGCCTCCCTCCACACTAAACCGAAAAATCGGACCCCCAGCAGCTCCTTCTTTATTTAGAATTCACACAACCGATATGCGAAAGGAGATCTCATCTATTTTCTTTGTGTCGAGCAGCTTGCCAGAAAGTTCTCTCTTTATGCAGCATCCAGATGGAATTGAATCCGTGTTATCAAAGGATTTCCTGCAATTATTTCTAGTATGGAATGAGTCAATCATCTACTTTGGTATCTTATTGAACAAAAATGGTGATATTGTTCCTCCATTGATCAAGAATTTCGATTTTTGGGAAGTATCAGCGAGGGGAAGGGGGGGGGGGGGGGAAGGGAAGCGAAGCTTAGCGAGCTTTCCGCCGGCCGACCACTACATAAGCCACTGGCGGAGAAAGCTCGAAGAGCTTGCATCATCATGGTGGTCCTCCGAAAATGTAGTACTGCCGAATTCCGGGATGCTAGACTTCCGTATGCGGGCACAAGCACCTGAGCAACAAGAGCCTGATATTGTGCTAATGAAATTCATGAATGGGCAATCCGAGAGGCCTCAAAAGCGATTCGCTTATGAATCTCCTATTGAAGAGTTATACTATGATCGCTCAGTGGTCCCCATGGAGAAGCATTCAGCCCTTGGAATTTCATAA

Coding sequence (CDS)

ATGAGACCGAAAGGCGTGGTCCAAGAGAAGGAGATGACAGCAATAGTGCACTACTTGAGAACGTGGAGGACAAATATGAAAATAAGGGCCTCCATTCGGAAAATTTGTGAAAAATGTCGCCTGATCCGTAGGCGGAGACGAATTATGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACTGCAGGGCATAGAGGGGGAGGTCACATGCATTTCTTAGGGCTTTCGGGTATGCCACGTCGCATTCCTGATTATCCAGATGCTTACGCTGGATGGAATGCCCTTAGCAGTTTTGGCTCTTATATATCCGTAGTTGGGATTCGTCGTTTCTTCGTGGTCGTAACAACCACTTCAAGCAGTGGAAATAACAAAAGATGTGCTCCAAGTCCTTGGGCTGTTGAACAGAATTCAACCACACTGGAATGGATGGTACAAAGTCCTCCAGCTTTTCATACTTTTGGAGAACTTCCTGCTATCAAGGAGACGAAAAGCTATGTGAAGTCGGGGTTGAGAATTGGGGGGCCAACGAGGCTGGGGCCTGATTTTCCAGCAATGACCGGTCAAGAAGGATTGAACGTCGGATTGATCATCGACTCAACATCTATTATCTTGCCACTTCACATTACAACATGTCTCCTGAAAGGTCAACAAAGAGCGCCTCCCTCCACACTAAACCGAAAAATCGGACCCCCAGCAGCTCCTTCTTTATTTAGAATTCACACAACCGATATGCGAAAGGAGATCTCATCTATTTTCTTTGTGTCGAGCAGCTTGCCAGAAAGTTCTCTCTTTATGCAGCATCCAGATGGAATTGAATCCGTGTTATCAAAGGATTTCCTGCAATTATTTCTAGTATGGAATGAGTCAATCATCTACTTTGGTATCTTATTGAACAAAAATGGTGATATTGTTCCTCCATTGATCAAGAATTTCGATTTTTGGGAAGTATCAGCGAGGGGAAGGGGGGGGGGGGGGGAAGGGAAGCGAAGCTTAGCGAGCTTTCCGCCGGCCGACCACTACATAAGCCACTGGCGGAGAAAGCTCGAAGAGCTTGCATCATCATGGTGGTCCTCCGAAAATGTAGTACTGCCGAATTCCGGGATGCTAGACTTCCGTATGCGGGCACAAGCACCTGAGCAACAAGAGCCTGATATTGTGCTAATGAAATTCATGAATGGGCAATCCGAGAGGCCTCAAAAGCGATTCGCTTATGAATCTCCTATTGAAGAGTTATACTATGATCGCTCAGTGGTCCCCATGGAGAAGCATTCAGCCCTTGGAATTTCATAA

Protein sequence

MRPKGVVQEKEMTAIVHYLRTWRTNMKIRASIRKICEKCRLIRRRRRIMHRCGKGRNARGIITAGHRGGGHMHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTTTSSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVKSGLRIGGPTRLGPDFPAMTGQEGLNVGLIIDSTSIILPLHITTCLLKGQQRAPPSTLNRKIGPPAAPSLFRIHTTDMRKEISSIFFVSSSLPESSLFMQHPDGIESVLSKDFLQLFLVWNESIIYFGILLNKNGDIVPPLIKNFDFWEVSARGRGGGGEGKRSLASFPPADHYISHWRRKLEELASSWWSSENVVLPNSGMLDFRMRAQAPEQQEPDIVLMKFMNGQSERPQKRFAYESPIEELYYDRSVVPMEKHSALGIS
Homology
[Close]
BLAST of Clc11G07600 vs. NCBI nr
Match: KAF3973005.1 (hypothetical protein CMV_003549 [Castanea mollissima])

HSP 1 Score: 250.4 bits (638), Expect = 2.9e-62
Identity = 119/122 (97.54%), Postives = 119/122 (97.54%), Query Frame = 0 

Query: 72  MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTTTSSSGNNKRCAPS 131
           MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVT TSSSGNNKRCAPS
Sbjct: 430 MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTITSSSGNNKRCAPS 489

Query: 132 PWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVKSGLRIGGPTRLGPDFPAMTGQE 191
           PWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVKSGLRIGGPTRLGP FPAMTGQE
Sbjct: 490 PWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVKSGLRIGGPTRLGPHFPAMTGQE 549

Query: 192 GL 194
            L
Sbjct: 550 RL 551

[Close]
BLAST of Clc11G07600 vs. NCBI nr
Match: AMC32792.1 (cytochrome c oxidase subunit 1 [Croton texensis])

HSP 1 Score: 206.1 bits (523), Expect = 6.2e-49
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 0 

Query: 72  MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTTTSSSGNNKRCAPS 131
           MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVT TSSSGNNKRCAPS
Sbjct: 430 MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTITSSSGNNKRCAPS 489

Query: 132 PWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK 170
           PWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
Sbjct: 490 PWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK 527

[Close]
BLAST of Clc11G07600 vs. NCBI nr
Match: YP_009913642.1 (cytochrome c oxidase subunit 1 [Luffa acutangula] >QLM02677.1 cytochrome c oxidase subunit 1 [Luffa acutangula])

HSP 1 Score: 206.1 bits (523), Expect = 6.2e-49
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 0 

Query: 72  MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTTTSSSGNNKRCAPS 131
           MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVT TSSSGNNKRCAPS
Sbjct: 430 MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTITSSSGNNKRCAPS 489

Query: 132 PWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK 170
           PWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
Sbjct: 490 PWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK 527

[Close]
BLAST of Clc11G07600 vs. NCBI nr
Match: AKE34087.1 (cytochrome c oxidase subunit 1, partial [Fragaria vesca subsp. bracteata])

HSP 1 Score: 206.1 bits (523), Expect = 6.2e-49
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 0 

Query: 72  MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTTTSSSGNNKRCAPS 131
           MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVT TSSSGNNKRCAPS
Sbjct: 430 MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTITSSSGNNKRCAPS 489

Query: 132 PWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK 170
           PWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
Sbjct: 490 PWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK 527

[Close]
BLAST of Clc11G07600 vs. NCBI nr
Match: QIS40616.1 (cytochrome c oxidase subunit 1 [Quercus variabilis])

HSP 1 Score: 206.1 bits (523), Expect = 6.2e-49
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 0 

Query: 72  MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTTTSSSGNNKRCAPS 131
           MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVT TSSSGNNKRCAPS
Sbjct: 430 MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTITSSSGNNKRCAPS 489

Query: 132 PWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK 170
           PWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
Sbjct: 490 PWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK 527

[Close]
BLAST of Clc11G07600 vs. ExPASy Swiss-Prot
Match: P08743 (Cytochrome c oxidase subunit 1 OS=Oenothera berteroana OX=3950 GN=COX1 PE=3 SV=2)

HSP 1 Score: 194.1 bits (492), Expect = 3.2e-48
Identity = 91/98 (92.86%), Postives = 94/98 (95.92%), Query Frame = 0 

Query: 72  MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTTTSSSGNNKRCAPS 131
           MHFLGLSGMPR IPDYP++YAGWNALSSFGSYISVVGIR FFVVVT TSSSGNNKRCAPS
Sbjct: 430 MHFLGLSGMPRPIPDYPESYAGWNALSSFGSYISVVGIRCFFVVVTITSSSGNNKRCAPS 489

Query: 132 PWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK 170
           PWAVE+NSTTLEWMVQSPPAFHTFGELPA KETKSYVK
Sbjct: 490 PWAVEKNSTTLEWMVQSPPAFHTFGELPATKETKSYVK 527

[Close]
BLAST of Clc11G07600 vs. ExPASy Swiss-Prot
Match: P60620 (Cytochrome c oxidase subunit 1 OS=Arabidopsis thaliana OX=3702 GN=COX1 PE=3 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 4.2e-48
Identity = 92/98 (93.88%), Postives = 93/98 (94.90%), Query Frame = 0 

Query: 72  MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTTTSSSGNNKRCAPS 131
           MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGI  FFVVVT T SSGNNKRCAPS
Sbjct: 430 MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGICCFFVVVTITLSSGNNKRCAPS 489

Query: 132 PWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK 170
           PWA+E NSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
Sbjct: 490 PWALELNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK 527

[Close]
BLAST of Clc11G07600 vs. ExPASy Swiss-Prot
Match: P60621 (Cytochrome c oxidase subunit 1 OS=Raphanus sativus OX=3726 GN=COX1 PE=3 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 4.2e-48
Identity = 92/98 (93.88%), Postives = 93/98 (94.90%), Query Frame = 0 

Query: 72  MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTTTSSSGNNKRCAPS 131
           MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGI  FFVVVT T SSGNNKRCAPS
Sbjct: 430 MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGICCFFVVVTITLSSGNNKRCAPS 489

Query: 132 PWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK 170
           PWA+E NSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
Sbjct: 490 PWALELNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK 527

[Close]
BLAST of Clc11G07600 vs. ExPASy Swiss-Prot
Match: P14578 (Cytochrome c oxidase subunit 1 OS=Oryza sativa subsp. japonica OX=39947 GN=COX1 PE=3 SV=2)

HSP 1 Score: 189.1 bits (479), Expect = 1.0e-46
Identity = 89/95 (93.68%), Postives = 90/95 (94.74%), Query Frame = 0 

Query: 72  MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTTTSSSGNNKRCAPS 131
           MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVV  TSSSG NKRCA S
Sbjct: 430 MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVAITSSSGKNKRCAES 489

Query: 132 PWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKS 167
           PWAVEQN TTLEW+VQSPPAFHTFGELPAIKETKS
Sbjct: 490 PWAVEQNPTTLEWLVQSPPAFHTFGELPAIKETKS 524

[Close]
BLAST of Clc11G07600 vs. ExPASy Swiss-Prot
Match: P12786 (Cytochrome c oxidase subunit 1 OS=Pisum sativum OX=3888 GN=COX1 PE=3 SV=2)

HSP 1 Score: 189.1 bits (479), Expect = 1.0e-46
Identity = 91/98 (92.86%), Postives = 92/98 (93.88%), Query Frame = 0 

Query: 72  MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTTTSSSGNNKRCAPS 131
           MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVT TSSSGNN   A  
Sbjct: 430 MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTITSSSGNNITRANI 489

Query: 132 PWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK 170
           PWAVEQNSTTLEW+VQSPPAFHTFGELPAIKETKSYVK
Sbjct: 490 PWAVEQNSTTLEWLVQSPPAFHTFGELPAIKETKSYVK 527

[Close]
BLAST of Clc11G07600 vs. ExPASy TrEMBL
Match: A0A0B4L2F9 (Cytochrome c oxidase subunit 1 (Fragment) OS=Fragaria iinumae OX=64939 GN=cox1 PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 3.0e-49
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 0 

Query: 72  MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTTTSSSGNNKRCAPS 131
           MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVT TSSSGNNKRCAPS
Sbjct: 425 MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTITSSSGNNKRCAPS 484

Query: 132 PWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK 170
           PWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
Sbjct: 485 PWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK 522

[Close]
BLAST of Clc11G07600 vs. ExPASy TrEMBL
Match: A0A0B4L0K8 (Cytochrome c oxidase subunit 1 (Fragment) OS=Fragaria mandshurica OX=538574 GN=cox1 PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 3.0e-49
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 0 

Query: 72  MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTTTSSSGNNKRCAPS 131
           MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVT TSSSGNNKRCAPS
Sbjct: 425 MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTITSSSGNNKRCAPS 484

Query: 132 PWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK 170
           PWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
Sbjct: 485 PWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK 522

[Close]
BLAST of Clc11G07600 vs. ExPASy TrEMBL
Match: A0A0B4L0L2 (Cytochrome c oxidase subunit 1 (Fragment) OS=Fragaria vesca subsp. bracteata OX=157670 GN=cox1 PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 3.0e-49
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 0 

Query: 72  MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTTTSSSGNNKRCAPS 131
           MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVT TSSSGNNKRCAPS
Sbjct: 425 MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTITSSSGNNKRCAPS 484

Query: 132 PWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK 170
           PWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
Sbjct: 485 PWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK 522

[Close]
BLAST of Clc11G07600 vs. ExPASy TrEMBL
Match: A0A0B4L0I8 (Cytochrome c oxidase subunit 1 (Fragment) OS=Fragaria virginiana OX=101015 GN=cox1 PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 3.0e-49
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 0 

Query: 72  MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTTTSSSGNNKRCAPS 131
           MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVT TSSSGNNKRCAPS
Sbjct: 425 MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTITSSSGNNKRCAPS 484

Query: 132 PWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK 170
           PWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
Sbjct: 485 PWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK 522

[Close]
BLAST of Clc11G07600 vs. ExPASy TrEMBL
Match: F8T949 (Cytochrome c oxidase subunit 1 OS=Rubus coreanus OX=321593 GN=COI PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 3.0e-49
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 0 

Query: 72  MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTTTSSSGNNKRCAPS 131
           MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVT TSSSGNNKRCAPS
Sbjct: 430 MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTITSSSGNNKRCAPS 489

Query: 132 PWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK 170
           PWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
Sbjct: 490 PWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK 527

[Close]
BLAST of Clc11G07600 vs. TAIR 10
Match: ATMG01360.1 (cytochrome oxidase )

HSP 1 Score: 193.7 bits (491), Expect = 3.0e-49
Identity = 92/98 (93.88%), Postives = 93/98 (94.90%), Query Frame = 0 

Query: 72  MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTTTSSSGNNKRCAPS 131
           MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGI  FFVVVT T SSGNNKRCAPS
Sbjct: 430 MHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGICCFFVVVTITLSSGNNKRCAPS 489

Query: 132 PWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK 170
           PWA+E NSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
Sbjct: 490 PWALELNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK 527

[Close]
BLAST of Clc11G07600 vs. TAIR 10
Match: ATCG00830.1 (ribosomal protein L2 )

HSP 1 Score: 46.2 bits (108), Expect = 7.7e-05
Identity = 20/22 (90.91%), Postives = 20/22 (90.91%), Query Frame = 0 

Query: 50 HRCGKGRNARGIITAGHRGGGH 72
          H CGKGRNARGIITA HRGGGH
Sbjct: 35 HHCGKGRNARGIITARHRGGGH 56

[Close]
BLAST of Clc11G07600 vs. TAIR 10
Match: ATCG01310.1 (ribosomal protein L2 )

HSP 1 Score: 46.2 bits (108), Expect = 7.7e-05
Identity = 20/22 (90.91%), Postives = 20/22 (90.91%), Query Frame = 0 

Query: 50 HRCGKGRNARGIITAGHRGGGH 72
          H CGKGRNARGIITA HRGGGH
Sbjct: 35 HHCGKGRNARGIITARHRGGGH 56

[Close]
BLAST of Clc11G07600 vs. TAIR 10
Match: ATCG00760.1 (ribosomal protein L36 )

HSP 1 Score: 43.9 bits (102), Expect = 3.8e-04
Identity = 23/32 (71.88%), Postives = 26/32 (81.25%), Query Frame = 0 

Query: 26 MKIRASIRKICEKCRLIRRRRRIMHRCGKGRN 58
          MKIRAS+RKICEKCRLIRRR RI+  C   R+
Sbjct: 1  MKIRASVRKICEKCRLIRRRGRIIVICSNPRH 32

The following BLAST results are available for this feature:
BLAST of Clc11G07600 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF3973005.12.9e-6297.54hypothetical protein CMV_003549 [Castanea mollissima][more]
AMC32792.16.2e-4998.98cytochrome c oxidase subunit 1 [Croton texensis][more]
YP_009913642.16.2e-4998.98cytochrome c oxidase subunit 1 [Luffa acutangula] >QLM02677.1 cytochrome c oxida... [more]
AKE34087.16.2e-4998.98cytochrome c oxidase subunit 1, partial [Fragaria vesca subsp. bracteata][more]
QIS40616.16.2e-4998.98cytochrome c oxidase subunit 1 [Quercus variabilis][more]
BLAST of Clc11G07600 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P087433.2e-4892.86Cytochrome c oxidase subunit 1 OS=Oenothera berteroana OX=3950 GN=COX1 PE=3 SV=2[more]
P606204.2e-4893.88Cytochrome c oxidase subunit 1 OS=Arabidopsis thaliana OX=3702 GN=COX1 PE=3 SV=1[more]
P606214.2e-4893.88Cytochrome c oxidase subunit 1 OS=Raphanus sativus OX=3726 GN=COX1 PE=3 SV=1[more]
P145781.0e-4693.68Cytochrome c oxidase subunit 1 OS=Oryza sativa subsp. japonica OX=39947 GN=COX1 ... [more]
P127861.0e-4692.86Cytochrome c oxidase subunit 1 OS=Pisum sativum OX=3888 GN=COX1 PE=3 SV=2[more]
BLAST of Clc11G07600 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0B4L2F93.0e-4998.98Cytochrome c oxidase subunit 1 (Fragment) OS=Fragaria iinumae OX=64939 GN=cox1 P... [more]
A0A0B4L0K83.0e-4998.98Cytochrome c oxidase subunit 1 (Fragment) OS=Fragaria mandshurica OX=538574 GN=c... [more]
A0A0B4L0L23.0e-4998.98Cytochrome c oxidase subunit 1 (Fragment) OS=Fragaria vesca subsp. bracteata OX=... [more]
A0A0B4L0I83.0e-4998.98Cytochrome c oxidase subunit 1 (Fragment) OS=Fragaria virginiana OX=101015 GN=co... [more]
F8T9493.0e-4998.98Cytochrome c oxidase subunit 1 OS=Rubus coreanus OX=321593 GN=COI PE=3 SV=1[more]
BLAST of Clc11G07600 vs. TAIR 10
Match NameE-valueIdentityDescription
ATMG01360.13.0e-4993.88cytochrome oxidase [more]
ATCG00830.17.7e-0590.91ribosomal protein L2 [more]
ATCG01310.17.7e-0590.91ribosomal protein L2 [more]
ATCG00760.13.8e-0471.88ribosomal protein L36 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036927Cytochrome c oxidase-like, subunit I superfamilyGENE3D1.20.210.10coord: 70..170
e-value: 3.0E-25
score: 90.5
IPR036927Cytochrome c oxidase-like, subunit I superfamilySUPERFAMILY81442Cytochrome c oxidase subunit I-likecoord: 71..161
IPR000473Ribosomal protein L36TIGRFAMTIGR01022TIGR01022coord: 26..52
e-value: 2.1E-6
score: 25.7
NoneNo IPR availablePANTHERPTHR10422:SF18CYTOCHROME C OXIDASE SUBUNIT 1coord: 71..165
IPR000883Cytochrome c oxidase subunit IPANTHERPTHR10422CYTOCHROME C OXIDASE SUBUNIT 1coord: 71..165
IPR023616Cytochrome c oxidase-like, subunit I domainPROSITEPS50855COX1coord: 72..162
score: 11.629723
IPR035977Ribosomal protein L36 superfamilySUPERFAMILY57840Ribosomal protein L36coord: 26..55

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc11G07600.1Clc11G07600.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0022900 electron transport chain
biological_process GO:0015990 electron transport coupled proton transport
biological_process GO:0006119 oxidative phosphorylation
biological_process GO:0006412 translation
biological_process GO:0009060 aerobic respiration
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0045277 respiratory chain complex IV
cellular_component GO:0005840 ribosome
molecular_function GO:0004129 cytochrome-c oxidase activity
molecular_function GO:0020037 heme binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003735 structural constituent of ribosome