Clc11G07570 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G07570
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic
Location	ClcChr11: 7687191 .. 7689707 (-)
RNA-Seq Expression	Clc11G07570
Synteny	Clc11G07570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCCGACCCACACCTAAGACCCATGGAGCGGGCGATATTTTAGTAGGTAAATTAACGCCTCAGATGGCGAAAGAATCATCGTATGCCCCGGAAGATAGATTATTACGAGCCATACTTGGCATTCAGGTATCCACTTCAAAAGAAACCTGTCTAAAACTACCTATCGGCGGTAGGGGTCGAGTTATTGATGTGATCTTTTCTTAACATCAAGCATGGTGTTACTAGATAAAAAAAAGGGTAACTCTAACAATTTCTTTGTCCTCAACGCCTCTAAATTTCCAGGAATTAGTCACTTCAACAGTCTTCGATGGTTCTACAGGTATCCAAAATACAAACGAGATGGATGTTTGTTGTCCCAACCATTTTTCTAAGTTCCGATCCCGATAAGGAAAAGGGATAATTTATAACAAAGTTTTCGTGTTGTTGATTCCTAGGTGTAGTGCTTCTTCCCCTCTGCTACCTATTTTTACTAGTGAATATTTTTACTAGTGGAGCCAAAAATTGACTAGAATTGGTTGGGTGGGTATCCCAAAGAGAAGAAGTATTACTAATTTCTTGATTTTGTATGGGAAAATAGGAAAATTTTCATATGTAATTCATCTACAAAGATAAGACATTAATGATGAACCAAATAAAGTGGCCATGGCTAGAGATTTTCTGTAAAAACGCTAGTCCCATGAGTTCATAATGAGAGTATTTCAATCTTTTTTGATTGCATGTATTATTCTCATCTCATTATGCGCATCACATAAAGGGGGAGCCGTATGAGATGAAAATCTCATGTACGGTTCTGGAACGAAGATTCTTTGAATGGAATAACGAACGACCGTAACGGATGTCGGCTCAATCCGAAGGAAATTATGCGGAAGCTTTACAGAATTATTATGAAGCTATGCGACTAGAAATCGATCCCTATGATCGAAGTTATATACTCTATAACATAGGTCTTATCCACACAAGGAATGGAGAACATACGAAAGCTTTGGAATATTATTTTCGGGCACTAGAACGAAACCCGTTCTTACCACAAGCTTTTAATAATATGGCTGTGATCTGTCATTACGTGCGACTATCTCCACTATAGAAAGAAAAAAAAGAGCAAATTCGCTAATAAATACTAAAAAAAATAGGCTTTCTACATATGTATTGTCCAAACTAACGATTTGTATCAGCTGAAAAGAATTTGATTTTATTTCCTCTTCGTTTTTATTTGGTCATACTCTGTCTCCTCGCGTTCAATTAATACTTTATACATATTTGAAAGGTTCAATTAGTTTCTTATAAGACCCAAAAGTCTAGTCTAGGAGAGTTGAAAGGCGGGAATGGCCAAGATTGATCTCAGATACAGTACAAATAGAATCCGATTCTCTTTTCATATTATATTTCTTCTTAGAAAGCCCTCCTTAAGTCAAAAAAAAAAAAAAAGAATGCTGCTTGATTTGAACGAACATTGTAAGAACCTTTCTAACTGACACCCCAGTCATAATGCCACCCACGAGACCCCTAAACTACAAGCTAGCGCGCATTCCTATTTGAATGAATTTTTTGAAAAAGGTATATGGATTCCGGATCATAAAGAAAGGGAATTTATTCTGCGACCGATGTGACCAAAGATTGAATTGGTACCAACGAACCAGGAACTGATGGAATTGATGATTTGAACAGGGTGCGGAAGAAGAAAGAAAAAGGAAATGGGTTGGACTGATATTAGTCTGGATACAGCAAAATAATTCTATTAGATCTAATGGACTTATTAGATCTAATAAGTACCTTGTGTCAGAATTGAGAAATTCTATGGCTCGAATCAAGTAGATAATATTTCTAGAAATATATATCAATATGAAAGTAAATACAATTAAGAAATTTTTTAATAAAATAGTTAAAAGTGAAAATTCGATTTCTAATAATATATTTAGAATATCATCACTATCTTAATATTTCGTGGAAGGAATTCCAGGGGGACCTTATGAAAATTTAGAAATACGATCTTTTGATCGAGGAAGGTCTCCGGAATGGAATGACTTTGACTATCGGTTCATTAGTAAAAAACCTTCGCCAACTTTTGAATTGGCGGGCGTACTAGTAATTGTATGGTTAGAAAGAGAAATATCTGCAGGGATACAACAACGGATTGGACCTGAATATGCTGGTCCTTTGGGAGTTCTTCAAGCTTTAGCAGATGGTACAAAACTACTTTTTAAAGAAAATCTGTTTCCATCTAGAGGTGATACTCGTTTATTCAGTATCGGACCATCCATAGCAGTCATATCAATTTTACTAAGCTATTCAGTAATTCCTTTTGGTTATCGCCTTGTTTTAGCTGATCTCCATATCGGTGTTTTTTTATGGATTGCCATTTCAAGTGTTGCTCCCATCGGACTTCTTATGTCAGGATATGGATCCAATAATAAATATTCCTTTTTAGGTGGTCTACGAGCTGCTGCTCAATCAATTAGTTATGAAATACCATTAACTCTATGTGTATTATCAATATCTCTACGTGTGATTCGTTGA

mRNA sequence

ATGATCCGACCCACACCTAAGACCCATGGAGCGGGCGATATTTTAGTAGGTAAATTAACGCCTCAGATGGCGAAAGAATCATCGTATGCCCCGGAAGATAGATTATTACGAGCCATACTTGGCATTCAGGAATTAGTCACTTCAACAGTCTTCGATGGTTCTACAGGAATTCCAGGGGGACCTTATGAAAATTTAGAAATACGATCTTTTGATCGAGGAAGGTCTCCGGAATGGAATGACTTTGACTATCGGTTCATTAGTAAAAAACCTTCGCCAACTTTTGAATTGGCGGGCGTACTAGTAATTGTATGGTTAGAAAGAGAAATATCTGCAGGGATACAACAACGGATTGGACCTGAATATGCTGGTCCTTTGGGAGTTCTTCAAGCTTTAGCAGATGGTACAAAACTACTTTTTAAAGAAAATCTGTTTCCATCTAGAGGTGATACTCGTTTATTCAGTATCGGACCATCCATAGCAGTCATATCAATTTTACTAAGCTATTCAGTAATTCCTTTTGGTTATCGCCTTGTTTTAGCTGATCTCCATATCGGTGTTTTTTTATGGATTGCCATTTCAAGTGTTGCTCCCATCGGACTTCTTATGTCAGGATATGGATCCAATAATAAATATTCCTTTTTAGGTGGTCTACGAGCTGCTGCTCAATCAATTAGTTATGAAATACCATTAACTCTATGTGTATTATCAATATCTCTACGTGTGATTCGTTGA

Coding sequence (CDS)

ATGATCCGACCCACACCTAAGACCCATGGAGCGGGCGATATTTTAGTAGGTAAATTAACGCCTCAGATGGCGAAAGAATCATCGTATGCCCCGGAAGATAGATTATTACGAGCCATACTTGGCATTCAGGAATTAGTCACTTCAACAGTCTTCGATGGTTCTACAGGAATTCCAGGGGGACCTTATGAAAATTTAGAAATACGATCTTTTGATCGAGGAAGGTCTCCGGAATGGAATGACTTTGACTATCGGTTCATTAGTAAAAAACCTTCGCCAACTTTTGAATTGGCGGGCGTACTAGTAATTGTATGGTTAGAAAGAGAAATATCTGCAGGGATACAACAACGGATTGGACCTGAATATGCTGGTCCTTTGGGAGTTCTTCAAGCTTTAGCAGATGGTACAAAACTACTTTTTAAAGAAAATCTGTTTCCATCTAGAGGTGATACTCGTTTATTCAGTATCGGACCATCCATAGCAGTCATATCAATTTTACTAAGCTATTCAGTAATTCCTTTTGGTTATCGCCTTGTTTTAGCTGATCTCCATATCGGTGTTTTTTTATGGATTGCCATTTCAAGTGTTGCTCCCATCGGACTTCTTATGTCAGGATATGGATCCAATAATAAATATTCCTTTTTAGGTGGTCTACGAGCTGCTGCTCAATCAATTAGTTATGAAATACCATTAACTCTATGTGTATTATCAATATCTCTACGTGTGATTCGTTGA

Protein sequence

MIRPTPKTHGAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQELVTSTVFDGSTGIPGGPYENLEIRSFDRGRSPEWNDFDYRFISKKPSPTFELAGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLFPSRGDTRLFSIGPSIAVISILLSYSVIPFGYRLVLADLHIGVFLWIAISSVAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRVIR

Homology

[Close]

BLAST of Clc11G07570 vs. NCBI nr
Match: THG03072.1 (hypothetical protein TEA_003388 [Camellia sinensis var. sinensis])

HSP 1 Score: 339.7 bits (870), Expect = 2.0e-89
Identity = 181/252 (71.83%), Postives = 194/252 (76.98%), Query Frame = 0


Query: 33  DRLLRAILGIQELVTS--TVFDGSTGIPGGPYENLEIRSFDRGRSPEWNDFDYRFISKKP 92
           D L R ++ I E+  S   +     GIPGGPYENLEIR FDR R+PEWNDF+YRFISKKP
Sbjct: 192 DSLARYLVRISEMTESIKIIQQALEGIPGGPYENLEIRRFDRVRNPEWNDFEYRFISKKP 251

Query: 93  SPTFELA---------------------------------------GVLVIVWLEREISA 152
           SPTFEL+                                       GVLVIVWLEREISA
Sbjct: 252 SPTFELSKQEIYVRVEAPKGELGIFLIGDQSVFPWRWKIRPPGITIGVLVIVWLEREISA 311

Query: 153 GIQQRIGPEYAGPLGVLQALADGTKLLFKENLFPSRGDTRLFSIGPSIAVISILLSYSVI 212
           GIQQRIGPEYAGPLG+LQALADGTKLLFKEN+ PSRGDTRLFSIGPSIAVISILLSYS+I
Sbjct: 312 GIQQRIGPEYAGPLGILQALADGTKLLFKENILPSRGDTRLFSIGPSIAVISILLSYSII 371

Query: 213 PFGYRLVLADLHIGVFLWIAISSVAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLT 244
           PFGYRL+LADL IGVFLWIAISS+AP+GLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLT
Sbjct: 372 PFGYRLILADLSIGVFLWIAISSIAPVGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLT 431

[Close]

BLAST of Clc11G07570 vs. NCBI nr
Match: KAG8363223.1 (hypothetical protein BUALT_BualtPtG0005800 [Buddleja alternifolia])

HSP 1 Score: 327.0 bits (837), Expect = 1.4e-85
Identity = 182/276 (65.94%), Postives = 192/276 (69.57%), Query Frame = 0


Query: 33  DRLLRAILGIQELVTS--TVFDGSTGIPGGPYENLEIRSFDRGRSPEWNDFDYRFISKKP 92
           D L R ++ I E+  S   +     GIPGGPYENLEIR FDR + PEWNDFDYRFISKKP
Sbjct: 235 DSLARYLVRISEMTESIKIIQQVLEGIPGGPYENLEIRRFDRIKDPEWNDFDYRFISKKP 294

Query: 93  SPTFELA----------------------------------------------------- 152
           SPTFEL+                                                     
Sbjct: 295 SPTFELSKQELYVRVEAPKGELGIFLIGDQSVFPWRWKIRPPGFINLQILPQLVKRMKLA 354

Query: 153 ----------GVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLFPSR 212
                     GVLVIVWLEREISAGIQQRIGPEYAGPLG+LQALADGTKLLFKENL PSR
Sbjct: 355 DIMTILGITLGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLLPSR 414

Query: 213 GDTRLFSIGPSIAVISILLSYSVIPFGYRLVLADLHIGVFLWIAISSVAPIGLLMSGYGS 244
           GDTRLFSIGPSIAVISILLSYSVIPF YRL+LADL IGVFLWIA+SS+APIGLLMSGYGS
Sbjct: 415 GDTRLFSIGPSIAVISILLSYSVIPFSYRLILADLSIGVFLWIAVSSLAPIGLLMSGYGS 474

[Close]

BLAST of Clc11G07570 vs. NCBI nr
Match: ERM97465.1 (hypothetical protein AMTR_s00456p00012010 [Amborella trichopoda])

HSP 1 Score: 323.6 bits (828), Expect = 1.5e-84
Identity = 181/272 (66.54%), Postives = 188/272 (69.12%), Query Frame = 0


Query: 33  DRLLRAILGIQELVTS--TVFDGSTGIPGGPYENLEIRSFDRGRSPEWNDFDYRFISKKP 92
           D L R ++ I E+  S   +     GIPGGPYENLEIR  DR R PEWNDFDYRFISKKP
Sbjct: 205 DSLARYLVRIGEMTESIKIIQQALEGIPGGPYENLEIRDVDRERKPEWNDFDYRFISKKP 264

Query: 93  SPTFEL------------------------------------------------------ 152
           SPTFEL                                                      
Sbjct: 265 SPTFELPKQELYVRVEAPKGELGIFLIGDQSGFPWRWKIRPPGFINLQILPQLVKRMKLA 324

Query: 153 -----AGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLFPSRGDTR 212
                 GVLVIVWLEREISAGIQQRIGPEYAGP GVLQALADG KLLFKENLFPSRGDTR
Sbjct: 325 DIMTILGVLVIVWLEREISAGIQQRIGPEYAGPWGVLQALADGAKLLFKENLFPSRGDTR 384

Query: 213 LFSIGPSIAVISILLSYSVIPFGYRLVLADLHIGVFLWIAISSVAPIGLLMSGYGSNNKY 244
           LFSIGPSIAVISILLSYSV+PFG  LVLADL+IGVFLWIAISS+APIGLLMSGYGSNNKY
Sbjct: 385 LFSIGPSIAVISILLSYSVVPFGSHLVLADLNIGVFLWIAISSIAPIGLLMSGYGSNNKY 444

[Close]

BLAST of Clc11G07570 vs. NCBI nr
Match: KAG4109411.1 (hypothetical protein ERO13_1Z049694v2 [Gossypium hirsutum])

HSP 1 Score: 320.1 bits (819), Expect = 1.7e-83
Identity = 175/272 (64.34%), Postives = 190/272 (69.85%), Query Frame = 0


Query: 33  DRLLRAILGIQELVTS--TVFDGSTGIPGGPYENLEIRSFDRGRSPEWNDFDYRFISKKP 92
           D L R ++ I E+  S   +     GIPGGPYENLEIR FDR R PEWNDF+YRFISKKP
Sbjct: 256 DSLARYLVRISEMTESIKIIQQALEGIPGGPYENLEIRCFDRERDPEWNDFEYRFISKKP 315

Query: 93  SPTFEL------------------------------------------------------ 152
           SPTFEL                                                      
Sbjct: 316 SPTFELPRQELYARIEAPKGELGIFLIGDQSGFPWRWKIRPPGFINLQILPQLVKRMKLA 375

Query: 153 -----AGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLFPSRGDTR 212
                 GVLVIVWLEREISAGIQQRIGPEYAGPLG+LQALADGTKLLFKEN+ PSRG+TR
Sbjct: 376 DIMTILGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENILPSRGNTR 435

Query: 213 LFSIGPSIAVISILLSYSVIPFGYRLVLADLHIGVFLWIAISSVAPIGLLMSGYGSNNKY 244
           LFSIGP+IAVISILLS+SVIPF  RL+LADL+IG+FLWIAISS+AP+GLLMSGYGSNNKY
Sbjct: 436 LFSIGPAIAVISILLSFSVIPFSSRLILADLNIGIFLWIAISSIAPVGLLMSGYGSNNKY 495

[Close]

BLAST of Clc11G07570 vs. NCBI nr
Match: TYI39234.1 (hypothetical protein ES332_A02G084000v1 [Gossypium tomentosum])

HSP 1 Score: 320.1 bits (819), Expect = 1.7e-83
Identity = 175/272 (64.34%), Postives = 190/272 (69.85%), Query Frame = 0


Query: 33  DRLLRAILGIQELVTS--TVFDGSTGIPGGPYENLEIRSFDRGRSPEWNDFDYRFISKKP 92
           D L R ++ I E+  S   +     GIPGGPYENLEIR FDR R PEWNDF+YRFISKKP
Sbjct: 256 DSLARYLVRISEMTESIKIIQQALEGIPGGPYENLEIRCFDRERDPEWNDFEYRFISKKP 315

Query: 93  SPTFEL------------------------------------------------------ 152
           SPTFEL                                                      
Sbjct: 316 SPTFELPRQELYARMEAPKGELGIFLIGDQSGFPWRWKIRPPGFINLQILPQLVKRMKLA 375

Query: 153 -----AGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLFPSRGDTR 212
                 GVLVIVWLEREISAGIQQRIGPEYAGPLG+LQALADGTKLLFKEN+ PSRG+TR
Sbjct: 376 DIMTILGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENILPSRGNTR 435

Query: 213 LFSIGPSIAVISILLSYSVIPFGYRLVLADLHIGVFLWIAISSVAPIGLLMSGYGSNNKY 244
           LFSIGP+IAVISILLS+SVIPF  RL+LADL+IG+FLWIAISS+AP+GLLMSGYGSNNKY
Sbjct: 436 LFSIGPAIAVISILLSFSVIPFSSRLILADLNIGIFLWIAISSIAPVGLLMSGYGSNNKY 495

[Close]

BLAST of Clc11G07570 vs. ExPASy Swiss-Prot
Match: Q2QD36 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhA PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 5.8e-71
Identity = 140/142 (98.59%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 98  GVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLFPSRGDTRLFSIGP 157
           GVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENL PSRGDTRLFSIGP
Sbjct: 43  GVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLLPSRGDTRLFSIGP 102

Query: 158 SIAVISILLSYSVIPFGYRLVLADLHIGVFLWIAISSVAPIGLLMSGYGSNNKYSFLGGL 217
           SIAVISILLSYSVIPFGYRLVLADL IGVFLWIAISSVAPIGLLMSGYGSNNKYSFLGGL
Sbjct: 103 SIAVISILLSYSVIPFGYRLVLADLPIGVFLWIAISSVAPIGLLMSGYGSNNKYSFLGGL 162

Query: 218 RAAAQSISYEIPLTLCVLSISL 240
           RAAAQSISYEIPLTLCVLSISL
Sbjct: 163 RAAAQSISYEIPLTLCVLSISL 184

[Close]

BLAST of Clc11G07570 vs. ExPASy Swiss-Prot
Match: Q06R75 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Jasminum nudiflorum OX=126431 GN=ndhA PE=3 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 2.9e-70
Identity = 135/142 (95.07%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 98  GVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLFPSRGDTRLFSIGP 157
           GVLVIVWLEREISAGIQQRIGPEYAGPLG+LQALADGTKLLFKENLFPSRGDTRLF+IGP
Sbjct: 44  GVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLFPSRGDTRLFTIGP 103

Query: 158 SIAVISILLSYSVIPFGYRLVLADLHIGVFLWIAISSVAPIGLLMSGYGSNNKYSFLGGL 217
           SIAVISILLSYSVIPFGYRL+L DL IGVFLWIA+SS+APIGLLMSGYGSNNKYSFLGGL
Sbjct: 104 SIAVISILLSYSVIPFGYRLILGDLSIGVFLWIAVSSLAPIGLLMSGYGSNNKYSFLGGL 163

Query: 218 RAAAQSISYEIPLTLCVLSISL 240
           RAAAQSISYEIPLTLCVLSISL
Sbjct: 164 RAAAQSISYEIPLTLCVLSISL 185

[Close]

BLAST of Clc11G07570 vs. ExPASy Swiss-Prot
Match: A0A390 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Coffea arabica OX=13443 GN=ndhA PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 3.7e-70
Identity = 137/142 (96.48%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 98  GVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLFPSRGDTRLFSIGP 157
           GVLVIVWLEREISAGIQQRIGPEYAGPLG+LQALADGTKLLFKENL PSRGD RLFSIGP
Sbjct: 43  GVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLLPSRGDARLFSIGP 102

Query: 158 SIAVISILLSYSVIPFGYRLVLADLHIGVFLWIAISSVAPIGLLMSGYGSNNKYSFLGGL 217
           SIAVISILLSYSVIPFGYRLVLADL IGVFLWIAISS+APIGLLMSGYGSNNKYSFLGGL
Sbjct: 103 SIAVISILLSYSVIPFGYRLVLADLTIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGL 162

Query: 218 RAAAQSISYEIPLTLCVLSISL 240
           RAAAQSISYEIPLTLCVLSISL
Sbjct: 163 RAAAQSISYEIPLTLCVLSISL 184

[Close]

BLAST of Clc11G07570 vs. ExPASy Swiss-Prot
Match: Q1KXQ8 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Helianthus annuus OX=4232 GN=ndhA PE=3 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 4.9e-70
Identity = 136/142 (95.77%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 98  GVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLFPSRGDTRLFSIGP 157
           GVLVIVWLEREISAGIQQRIGPEYAGPLG+LQALADGTKLLFKENL PSRGDTRLFSIGP
Sbjct: 43  GVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLLPSRGDTRLFSIGP 102

Query: 158 SIAVISILLSYSVIPFGYRLVLADLHIGVFLWIAISSVAPIGLLMSGYGSNNKYSFLGGL 217
           SIAVISILLSY VIPFGYRLVLADL IGVFLWIAISS+AP+GLLMSGYGSNNKYSFLGGL
Sbjct: 103 SIAVISILLSYLVIPFGYRLVLADLSIGVFLWIAISSIAPVGLLMSGYGSNNKYSFLGGL 162

Query: 218 RAAAQSISYEIPLTLCVLSISL 240
           RAAAQSISYEIPLTLCVLSISL
Sbjct: 163 RAAAQSISYEIPLTLCVLSISL 184

[Close]

BLAST of Clc11G07570 vs. ExPASy Swiss-Prot
Match: Q14FA3 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Populus alba OX=43335 GN=ndhA PE=3 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 1.1e-69
Identity = 135/142 (95.07%), Postives = 138/142 (97.18%), Query Frame = 0


Query: 98  GVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLFPSRGDTRLFSIGP 157
           G+LVIVWLEREISAGIQQRIGPEYAGP GVLQALADGTKLLFKENLFPSRGDTRLFSIGP
Sbjct: 43  GILVIVWLEREISAGIQQRIGPEYAGPFGVLQALADGTKLLFKENLFPSRGDTRLFSIGP 102

Query: 158 SIAVISILLSYSVIPFGYRLVLADLHIGVFLWIAISSVAPIGLLMSGYGSNNKYSFLGGL 217
           SIAVIS LLSYSVIPFGY  VLADL+IGVFLWIAISS+APIGLLMSGYGSNNKYSFLGGL
Sbjct: 103 SIAVISTLLSYSVIPFGYHFVLADLNIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGL 162

Query: 218 RAAAQSISYEIPLTLCVLSISL 240
           RAAAQSISYEIPLTLCVLSISL
Sbjct: 163 RAAAQSISYEIPLTLCVLSISL 184

[Close]

BLAST of Clc11G07570 vs. ExPASy TrEMBL
Match: A0A4S4DJL6 (Complex1_49kDa domain-containing protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_003388 PE=3 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 9.8e-90
Identity = 181/252 (71.83%), Postives = 194/252 (76.98%), Query Frame = 0


Query: 33  DRLLRAILGIQELVTS--TVFDGSTGIPGGPYENLEIRSFDRGRSPEWNDFDYRFISKKP 92
           D L R ++ I E+  S   +     GIPGGPYENLEIR FDR R+PEWNDF+YRFISKKP
Sbjct: 192 DSLARYLVRISEMTESIKIIQQALEGIPGGPYENLEIRRFDRVRNPEWNDFEYRFISKKP 251

Query: 93  SPTFELA---------------------------------------GVLVIVWLEREISA 152
           SPTFEL+                                       GVLVIVWLEREISA
Sbjct: 252 SPTFELSKQEIYVRVEAPKGELGIFLIGDQSVFPWRWKIRPPGITIGVLVIVWLEREISA 311

Query: 153 GIQQRIGPEYAGPLGVLQALADGTKLLFKENLFPSRGDTRLFSIGPSIAVISILLSYSVI 212
           GIQQRIGPEYAGPLG+LQALADGTKLLFKEN+ PSRGDTRLFSIGPSIAVISILLSYS+I
Sbjct: 312 GIQQRIGPEYAGPLGILQALADGTKLLFKENILPSRGDTRLFSIGPSIAVISILLSYSII 371

Query: 213 PFGYRLVLADLHIGVFLWIAISSVAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLT 244
           PFGYRL+LADL IGVFLWIAISS+AP+GLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLT
Sbjct: 372 PFGYRLILADLSIGVFLWIAISSIAPVGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLT 431

[Close]

BLAST of Clc11G07570 vs. ExPASy TrEMBL
Match: W1NR53 (Complex1_49kDa domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00456p00012010 PE=3 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 7.3e-85
Identity = 181/272 (66.54%), Postives = 188/272 (69.12%), Query Frame = 0


Query: 33  DRLLRAILGIQELVTS--TVFDGSTGIPGGPYENLEIRSFDRGRSPEWNDFDYRFISKKP 92
           D L R ++ I E+  S   +     GIPGGPYENLEIR  DR R PEWNDFDYRFISKKP
Sbjct: 205 DSLARYLVRIGEMTESIKIIQQALEGIPGGPYENLEIRDVDRERKPEWNDFDYRFISKKP 264

Query: 93  SPTFEL------------------------------------------------------ 152
           SPTFEL                                                      
Sbjct: 265 SPTFELPKQELYVRVEAPKGELGIFLIGDQSGFPWRWKIRPPGFINLQILPQLVKRMKLA 324

Query: 153 -----AGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLFPSRGDTR 212
                 GVLVIVWLEREISAGIQQRIGPEYAGP GVLQALADG KLLFKENLFPSRGDTR
Sbjct: 325 DIMTILGVLVIVWLEREISAGIQQRIGPEYAGPWGVLQALADGAKLLFKENLFPSRGDTR 384

Query: 213 LFSIGPSIAVISILLSYSVIPFGYRLVLADLHIGVFLWIAISSVAPIGLLMSGYGSNNKY 244
           LFSIGPSIAVISILLSYSV+PFG  LVLADL+IGVFLWIAISS+APIGLLMSGYGSNNKY
Sbjct: 385 LFSIGPSIAVISILLSYSVVPFGSHLVLADLNIGVFLWIAISSIAPIGLLMSGYGSNNKY 444

[Close]

BLAST of Clc11G07570 vs. ExPASy TrEMBL
Match: A0A803LMN4 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 9.5e-85
Identity = 173/225 (76.89%), Postives = 184/225 (81.78%), Query Frame = 0


Query: 33  DRLLRAILGIQELVTST--VFDGSTGIPGGPYENLEIRSFDRGRSPEWNDFDYRFISKKP 92
           D L R ++ I  +  S   +      IPGGPYENLEIR F+R + PEWNDF+YRFISKKP
Sbjct: 189 DSLARYLIRIGGMAESVKIIQQALEAIPGGPYENLEIRRFNRIKYPEWNDFEYRFISKKP 248

Query: 93  SPTFELA------------GVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLL 152
           SP FEL+            GVLVIVWLEREISAGIQQRIGPEYAGPLG+LQALADG KLL
Sbjct: 249 SPAFELSKQELYVRVEAPKGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGIKLL 308

Query: 153 FKENLFPSRGDTRLFSIGPSIAVISILLSYSVIPFGYRLVLADLHIGVFLWIAISSVAPI 212
           FKENL PSRGD  L SIGPSIAVISILLSYSVIPFG RLVLADL+IGVFLWIAISS+API
Sbjct: 309 FKENLLPSRGDALLISIGPSIAVISILLSYSVIPFGSRLVLADLNIGVFLWIAISSIAPI 368

Query: 213 GLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRVIR 244
           GLLMSGYGSNNKYSFLGGLRA AQSISYEIPLTL VLSISLRVIR
Sbjct: 369 GLLMSGYGSNNKYSFLGGLRAVAQSISYEIPLTLSVLSISLRVIR 413

[Close]

BLAST of Clc11G07570 vs. ExPASy TrEMBL
Match: A0A5D2RIB3 (Complex1_49kDa domain-containing protein OS=Gossypium tomentosum OX=34277 GN=ES332_A02G084000v1 PE=3 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 8.1e-84
Identity = 175/272 (64.34%), Postives = 190/272 (69.85%), Query Frame = 0


Query: 33  DRLLRAILGIQELVTS--TVFDGSTGIPGGPYENLEIRSFDRGRSPEWNDFDYRFISKKP 92
           D L R ++ I E+  S   +     GIPGGPYENLEIR FDR R PEWNDF+YRFISKKP
Sbjct: 256 DSLARYLVRISEMTESIKIIQQALEGIPGGPYENLEIRCFDRERDPEWNDFEYRFISKKP 315

Query: 93  SPTFEL------------------------------------------------------ 152
           SPTFEL                                                      
Sbjct: 316 SPTFELPRQELYARMEAPKGELGIFLIGDQSGFPWRWKIRPPGFINLQILPQLVKRMKLA 375

Query: 153 -----AGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLFPSRGDTR 212
                 GVLVIVWLEREISAGIQQRIGPEYAGPLG+LQALADGTKLLFKEN+ PSRG+TR
Sbjct: 376 DIMTILGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENILPSRGNTR 435

Query: 213 LFSIGPSIAVISILLSYSVIPFGYRLVLADLHIGVFLWIAISSVAPIGLLMSGYGSNNKY 244
           LFSIGP+IAVISILLS+SVIPF  RL+LADL+IG+FLWIAISS+AP+GLLMSGYGSNNKY
Sbjct: 436 LFSIGPAIAVISILLSFSVIPFSSRLILADLNIGIFLWIAISSIAPVGLLMSGYGSNNKY 495

[Close]

BLAST of Clc11G07570 vs. ExPASy TrEMBL
Match: A0A6S7L5T7 (Complex1_49kDa domain-containing protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS3379 PE=3 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 3.1e-83
Identity = 178/276 (64.49%), Postives = 188/276 (68.12%), Query Frame = 0


Query: 33  DRLLRAILGIQELVTS--TVFDGSTGIPGGPYENLEIRSFDRGRSPEWNDFDYRFISKKP 92
           D L R ++ I E+  S   +     GIPGGPYENLEIR FDR +   WN+FDYRFISKKP
Sbjct: 274 DSLARYLVRISEMTESIKIIQQALEGIPGGPYENLEIRRFDRVKDTVWNEFDYRFISKKP 333

Query: 93  SPTFELA----------------------------------------------------- 152
           SPTFEL+                                                     
Sbjct: 334 SPTFELSKQELYARVEAPKGELGIFLIGDKGVFPWRYKIRPPGFINLQILPQLVKRMKLA 393

Query: 153 ----------GVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLFPSR 212
                     GVLVIVWLEREISAGIQQRIGPEYAGPLG+LQALADGTKLLFKENL PSR
Sbjct: 394 DIMTILGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLLPSR 453

Query: 213 GDTRLFSIGPSIAVISILLSYSVIPFGYRLVLADLHIGVFLWIAISSVAPIGLLMSGYGS 244
           GDTRLFSIGPSIAVISILLSY VIPF Y LVLADL IGVFLWIAISS+AP+GLLMSGYGS
Sbjct: 454 GDTRLFSIGPSIAVISILLSYLVIPFSYHLVLADLSIGVFLWIAISSIAPVGLLMSGYGS 513

[Close]

BLAST of Clc11G07570 vs. TAIR 10
Match: ATCG01100.1 (NADH dehydrogenase family protein )

HSP 1 Score: 256.5 bits (654), Expect = 2.1e-68
Identity = 132/144 (91.67%), Postives = 138/144 (95.83%), Query Frame = 0


Query: 96  LAGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLFPSRGDTRLFSI 155
           + GVLVIVWLEREISAGIQQRIGPEYAGPLG+LQALADGTKLLFKENL PSRG+T LFSI
Sbjct: 41  ITGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLRPSRGNTPLFSI 100

Query: 156 GPSIAVISILLSYSVIPFGYRLVLADLHIGVFLWIAISSVAPIGLLMSGYGSNNKYSFLG 215
           GPSIAVISILLSYSVIPF   LVLADL+IG+FLWIAISS+APIGLLMSGYGSNNKYSFLG
Sbjct: 101 GPSIAVISILLSYSVIPFSNHLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLG 160

Query: 216 GLRAAAQSISYEIPLTLCVLSISL 240
           GLRAAAQSISYEIPLTLCVLSISL
Sbjct: 161 GLRAAAQSISYEIPLTLCVLSISL 184

[Close]

BLAST of Clc11G07570 vs. TAIR 10
Match: ATMG01120.1 (NADH dehydrogenase 1B )

HSP 1 Score: 120.9 bits (302), Expect = 1.4e-27
Identity = 61/146 (41.78%), Postives = 98/146 (67.12%), Query Frame = 0


Query: 96  LAGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLFPSRGDTRLFSI 155
           L GV  +V  ER++ A +Q+R GP+  G  G+LQ LADG+KL+ KE + PS  +  LF +
Sbjct: 17  LLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGSKLILKEPISPSSANFFLFRM 76

Query: 156 GPSIAVISILLSYSVIPFGYRLVLADLHIGVFLWIAISSVAPIGLLMSGYGSNNKYSFLG 215
            P    +  L++ +V+PF Y +VL+D +IG+    AISS+   G++++G  SN+KY+FLG
Sbjct: 77  APVATFMLSLVARAVVPFDYGMVLSDPNIGLLYLFAISSLGVYGIIIAGRSSNSKYAFLG 136

Query: 216 GLRAAAQSISYEIPLTLCVLSISLRV 242
            LR+AAQ +SYE+ + L ++++ + V
Sbjct: 137 ALRSAAQMVSYEVSIGLILITVLICV 162

[Close]

BLAST of Clc11G07570 vs. TAIR 10
Match: ATMG00516.1 (NADH dehydrogenase 1C )

HSP 1 Score: 120.9 bits (302), Expect = 1.4e-27
Identity = 61/146 (41.78%), Postives = 98/146 (67.12%), Query Frame = 0


Query: 96  LAGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLFPSRGDTRLFSI 155
           L GV  +V  ER++ A +Q+R GP+  G  G+LQ LADG+KL+ KE + PS  +  LF +
Sbjct: 17  LLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGSKLILKEPISPSSANFFLFRM 76

Query: 156 GPSIAVISILLSYSVIPFGYRLVLADLHIGVFLWIAISSVAPIGLLMSGYGSNNKYSFLG 215
            P    +  L++ +V+PF Y +VL+D +IG+    AISS+   G++++G  SN+KY+FLG
Sbjct: 77  APVATFMLSLVARAVVPFDYGMVLSDPNIGLLYLFAISSLGVYGIIIAGRSSNSKYAFLG 136

Query: 216 GLRAAAQSISYEIPLTLCVLSISLRV 242
            LR+AAQ +SYE+ + L ++++ + V
Sbjct: 137 ALRSAAQMVSYEVSIGLILITVLICV 162

[Close]

BLAST of Clc11G07570 vs. TAIR 10
Match: ATMG01275.1 (NADH dehydrogenase 1A )

HSP 1 Score: 120.9 bits (302), Expect = 1.4e-27
Identity = 61/146 (41.78%), Postives = 98/146 (67.12%), Query Frame = 0


Query: 96  LAGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLFPSRGDTRLFSI 155
           L GV  +V  ER++ A +Q+R GP+  G  G+LQ LADG+KL+ KE + PS  +  LF +
Sbjct: 17  LLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGSKLILKEPISPSSANFFLFRM 76

Query: 156 GPSIAVISILLSYSVIPFGYRLVLADLHIGVFLWIAISSVAPIGLLMSGYGSNNKYSFLG 215
            P    +  L++ +V+PF Y +VL+D +IG+    AISS+   G++++G  SN+KY+FLG
Sbjct: 77  APVATFMLSLVARAVVPFDYGMVLSDPNIGLLYLFAISSLGVYGIIIAGRSSNSKYAFLG 136

Query: 216 GLRAAAQSISYEIPLTLCVLSISLRV 242
            LR+AAQ +SYE+ + L ++++ + V
Sbjct: 137 ALRSAAQMVSYEVSIGLILITVLICV 162

[Close]

BLAST of Clc11G07570 vs. TAIR 10
Match: ATCG01110.1 (NAD(P)H dehydrogenase subunit H )

HSP 1 Score: 87.0 bits (214), Expect = 2.2e-17
Identity = 40/67 (59.70%), Postives = 49/67 (73.13%), Query Frame = 0


Query: 33  DRLLRAILGIQELVTS--TVFDGSTGIPGGPYENLEIRSFDRGRSPEWNDFDYRFISKKP 92
           D L R ++ + E+  S   +     G+PGGPYENLE R FDR R+PEWNDF+YRFISKKP
Sbjct: 256 DSLARYLVRLSEMTESIKIIQQALEGLPGGPYENLESRGFDRKRNPEWNDFEYRFISKKP 315

Query: 93  SPTFELA 98
           SPTFEL+
Sbjct: 316 SPTFELS 322

The following BLAST results are available for this feature:

BLAST of Clc11G07570 vs. NCBI nr


Match Name	E-value	Identity	Description
THG03072.1	2.0e-89	71.83	hypothetical protein TEA_003388 [Camellia sinensis var. sinensis]	[more]
KAG8363223.1	1.4e-85	65.94	hypothetical protein BUALT_BualtPtG0005800 [Buddleja alternifolia]	[more]
ERM97465.1	1.5e-84	66.54	hypothetical protein AMTR_s00456p00012010 [Amborella trichopoda]	[more]
KAG4109411.1	1.7e-83	64.34	hypothetical protein ERO13_1Z049694v2 [Gossypium hirsutum]	[more]
TYI39234.1	1.7e-83	64.34	hypothetical protein ES332_A02G084000v1 [Gossypium tomentosum]	[more]

BLAST of Clc11G07570 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2QD36	5.8e-71	98.59	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis sativus OX=36...	[more]
Q06R75	2.9e-70	95.07	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Jasminum nudiflorum O...	[more]
A0A390	3.7e-70	96.48	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Coffea arabica OX=134...	[more]
Q1KXQ8	4.9e-70	95.77	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Helianthus annuus OX=...	[more]
Q14FA3	1.1e-69	95.07	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Populus alba OX=43335...	[more]

BLAST of Clc11G07570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4S4DJL6	9.8e-90	71.83	Complex1_49kDa domain-containing protein OS=Camellia sinensis var. sinensis OX=5...	[more]
W1NR53	7.3e-85	66.54	Complex1_49kDa domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMT...	[more]
A0A803LMN4	9.5e-85	76.89	Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1	[more]
A0A5D2RIB3	8.1e-84	64.34	Complex1_49kDa domain-containing protein OS=Gossypium tomentosum OX=34277 GN=ES3...	[more]
A0A6S7L5T7	3.1e-83	64.49	Complex1_49kDa domain-containing protein OS=Lactuca saligna OX=75948 GN=LSAL_LOC...	[more]

BLAST of Clc11G07570 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG01100.1	2.1e-68	91.67	NADH dehydrogenase family protein	[more]
ATMG01120.1	1.4e-27	41.78	NADH dehydrogenase 1B	[more]
ATMG00516.1	1.4e-27	41.78	NADH dehydrogenase 1C	[more]
ATMG01275.1	1.4e-27	41.78	NADH dehydrogenase 1A	[more]
ATCG01110.1	2.2e-17	59.70	NAD(P)H dehydrogenase subunit H	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001694	NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H	PFAM	PF00146	NADHdh	coord: 97..239 e-value: 3.5E-49 score: 167.7
IPR001694	NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H	PANTHER	PTHR11432	NADH DEHYDROGENASE SUBUNIT 1	coord: 97..239
IPR014724	RNA polymerase Rpb2, OB-fold	GENE3D	2.40.50.150		coord: 10..61 e-value: 3.8E-5 score: 25.5
None	No IPR available	PANTHER	PTHR11432:SF3	NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1	coord: 97..239
IPR018086	NADH:ubiquinone oxidoreductase, subunit 1, conserved site	PROSITE	PS00667	COMPLEX1_ND1_1	coord: 126..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G07570.1	Clc11G07570.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
cellular_component	GO:0009536	plastid
molecular_function	GO:0005488	binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity