Clc11G07560 (gene) Watermelon (cordophanus) v2

Overview
NameClc11G07560
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionNAD(P)H-quinone oxidoreductase subunit 3, chloroplastic
LocationClcChr11: 7686434 .. 7686751 (-)
RNA-Seq ExpressionClc11G07560
SyntenyClc11G07560
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTTGCTTTACGAATATGATATTTTCTGGGTATTTCTGATAATATCAAGTGTTATTCCTATTTTGTTTTGGGCATTCCCCGAAAAGGGAGAGACGAGGGAATCGTCTGCTCCCGTTTATGTGACGAACCGAACAACCATCGTTAGGTCCCGAATTCAGCGAACCACCGGATCCAGACCCGCGGACTTTGGAACACATTCGGTAGGCTGTGTTCCTTCGACACTCTGTTCAGTAGCCTTTTCTGGATCACCAGCCGACTCAGAACCATCTCCTCTCCTTTGCCGATGCTCACGGAATTACTCACGACTAGTCTAG

mRNA sequence

ATGTTTTTGCTTTACGAATATGATATTTTCTGGGTATTTCTGATAATATCAAGTGTTATTCCTATTTTGTTTTGGGCATTCCCCGAAAAGGGAGAGACGAGGGAATCGTCTGCTCCCGTTTATGTGACGAACCGAACAACCATCGTTAGGTCCCGAATTCAGCGAACCACCGGATCCAGACCCGCGGACTTTGGAACACATTCGGTAGGCTGTGTTCCTTCGACACTCTGTTCAGTAGCCTTTTCTGGATCACCAGCCGACTCAGAACCATCTCCTCTCCTTTGCCGATGCTCACGGAATTACTCACGACTAGTCTAG

Coding sequence (CDS)

ATGTTTTTGCTTTACGAATATGATATTTTCTGGGTATTTCTGATAATATCAAGTGTTATTCCTATTTTGTTTTGGGCATTCCCCGAAAAGGGAGAGACGAGGGAATCGTCTGCTCCCGTTTATGTGACGAACCGAACAACCATCGTTAGGTCCCGAATTCAGCGAACCACCGGATCCAGACCCGCGGACTTTGGAACACATTCGGTAGGCTGTGTTCCTTCGACACTCTGTTCAGTAGCCTTTTCTGGATCACCAGCCGACTCAGAACCATCTCCTCTCCTTTGCCGATGCTCACGGAATTACTCACGACTAGTCTAG

Protein sequence

MFLLYEYDIFWVFLIISSVIPILFWAFPEKGETRESSAPVYVTNRTTIVRSRIQRTTGSRPADFGTHSVGCVPSTLCSVAFSGSPADSEPSPLLCRCSRNYSRLV
Homology
[Close]
BLAST of Clc11G07560 vs. ExPASy Swiss-Prot
Match: Q4VZH0 (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhC PE=3 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 5.9e-04
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 0 

Query: 1  MFLLYEYDIFWVFLIISSVIPIL 24
          MFLLYEYDIFWVFLIISSVIPIL
Sbjct: 1  MFLLYEYDIFWVFLIISSVIPIL 23

[Close]
BLAST of Clc11G07560 vs. ExPASy Swiss-Prot
Match: Q9M3L9 (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Spinacia oleracea OX=3562 GN=ndhC PE=3 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 7.7e-04
Identity = 23/27 (85.19%), Postives = 24/27 (88.89%), Query Frame = 0 

Query: 1  MFLLYEYDIFWVFLIISSVIPILFWAF 28
          MFLLYEYDIFW FLIISSVIPIL + F
Sbjct: 1  MFLLYEYDIFWAFLIISSVIPILAFLF 27

[Close]
BLAST of Clc11G07560 vs. TAIR 10
Match: ATCG00440.1 (NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 protein )

HSP 1 Score: 40.8 bits (94), Expect = 7.9e-04
Identity = 19/23 (82.61%), Postives = 21/23 (91.30%), Query Frame = 0 

Query: 1  MFLLYEYDIFWVFLIISSVIPIL 24
          MFLLYEYDIFW FL+ISS IP+L
Sbjct: 1  MFLLYEYDIFWAFLLISSAIPVL 23

The following BLAST results are available for this feature:
BLAST of Clc11G07560 vs.
Match NameE-valueIdentityDescription
BLAST of Clc11G07560 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q4VZH05.9e-04100.00NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Cucumis sativus OX=36... [more]
Q9M3L97.7e-0485.19NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Spinacia oleracea OX=... [more]
BLAST of Clc11G07560 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Clc11G07560 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00440.17.9e-0482.61NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc11G07560.1Clc11G07560.1mRNA