Clc11G07535 (gene) Watermelon (cordophanus) v2

Overview
NameClc11G07535
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionProtein TIC 214
LocationClcChr11: 7680628 .. 7681985 (-)
RNA-Seq ExpressionClc11G07535
SyntenyClc11G07535
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGATAGAAATGCTAACCAAGTGACACCCTTATACACTAATAAAGGAGAAAGGCCATGGGTCATGAAAGAGAAGAAAGTATCAGCAACAACAGGTTTTATTACGGGACAGCTCATGATGTTCATATCGATCTATTATGCGCCTCTGCATCTAGCATTGGGTAGACCTCATACAATAACTGTCCTAGCTCTACCGTAAATAGCATAGTATTATCTGATTCATAGGGATACGAAAAAGTATTTTTAGTACCAAAATGGGGAATAGTAACAAAAGGGCGCATAATTTTTGTTACATTACTGTCAATTTGATATGTTGTTTTTTTCACCAAAAAAGAAGACCTTTCATTATTATTCATTGTTAATAATGATAAGAAACGAAAGTTTTTTTGAATGATTTTTGATCCTTCTTTACCCCATAATGATATTGAATAGAGGGAGTTATTTGTTTTTCCACTGTAGTTTTTACAATAAAGGTTTAAATGTCCATCAAAAGTAAGTAAGTAGATGCGAAACATATAAAATGCTGTTAATCCAGCTGTGGAACAGGCTATTATTGCGAAAATCGGTGAATACAACCAACTATCATTAAGAATTTCATCTTTGGACCAAAAGCAGGCAAGGGGTGGAATACCACAAAGAGAAAGGGTACCTAATAAAAAAGCATTTTTTGTAATTGGCACATGCTTTGTTAAACCACCCATAAGAACCATATTCTGACTTTTATCGGGAGAATATCCAACAACGGATTCCATTGAGTGAATAATGGACCCAGATCCTAAAAACAACAACGCTGGTCGGGATCTCTCTGGTAAAAACGAAAGCGGAATTCCTGATTATTCAGAACTTAATCCAATCGCCGTAACTTGGGCTCATCATGCTATACTCGTGGGGAAGGAAAAACGAGCAGTTTACGCTTTAGTAGCTACCGTTTCACTGGCTCTAGTATTCACAGGCTTTCAAGGAATGGAATATTATCAAGCACCCTTCACTATTTCGGATAGTATTTATGGTTCTACCTTTTTCTGTGTTCAACTCCGCGGGTTAGCTGGTTGGAAGGCATTGCTTGCTTTCTGCCGTCTATCTTTCCCTTCTTTCACTCGGTCAAGCGGCTTCGCTCCTTTCTTGTTGAGAATCTTATGTCTATAGGCTTTAAAAAACTCGTTTACTCTAACCCGGGTAAGGTTCTCCGGTGAATTCGCGACATTCCAGTACCAATGGATGTACCGAAGCCAATCCTTCATCCAGTTCCTGAGCAAAGACCACTCAAGGAAGTCCCGGACTCTTTCTGTTGGAAATCAAATAATTAATCAAGAGCCACCTTTAAATCCGAAGGTTTCATCTCTTGTTGAAGGATAG

mRNA sequence

ATGGATGATAGAAATGCTAACCAAGTGACACCCTTATACACTAATAAAGGAGAAAGGCCATGGGTCATGAAAGAGAAGAAAGTATCAGCAACAACAGCTGTGGAACAGGCTATTATTGCGAAAATCGGTGAATACAACCAACTATCATTAAGAATTTCATCTTTGGACCAAAAGCAGGCAAGGGGTGGAATACCACAAAGAGAAAGGGCTTTAAAAAACTCGTTTACTCTAACCCGGGTAAGGTTCTCCGGTGAATTCGCGACATTCCAGTACCAATGGATGTACCGAAGCCAATCCTTCATCCAGTTCCTGAGCAAAGACCACTCAAGGAAGTCCCGGACTCTTTCTGTTGGAAATCAAATAATTAATCAAGAGCCACCTTTAAATCCGAAGGTTTCATCTCTTGTTGAAGGATAG

Coding sequence (CDS)

ATGGATGATAGAAATGCTAACCAAGTGACACCCTTATACACTAATAAAGGAGAAAGGCCATGGGTCATGAAAGAGAAGAAAGTATCAGCAACAACAGCTGTGGAACAGGCTATTATTGCGAAAATCGGTGAATACAACCAACTATCATTAAGAATTTCATCTTTGGACCAAAAGCAGGCAAGGGGTGGAATACCACAAAGAGAAAGGGCTTTAAAAAACTCGTTTACTCTAACCCGGGTAAGGTTCTCCGGTGAATTCGCGACATTCCAGTACCAATGGATGTACCGAAGCCAATCCTTCATCCAGTTCCTGAGCAAAGACCACTCAAGGAAGTCCCGGACTCTTTCTGTTGGAAATCAAATAATTAATCAAGAGCCACCTTTAAATCCGAAGGTTTCATCTCTTGTTGAAGGATAG

Protein sequence

MDDRNANQVTPLYTNKGERPWVMKEKKVSATTAVEQAIIAKIGEYNQLSLRISSLDQKQARGGIPQRERALKNSFTLTRVRFSGEFATFQYQWMYRSQSFIQFLSKDHSRKSRTLSVGNQIINQEPPLNPKVSSLVEG
Homology
[Close]
BLAST of Clc11G07535 vs. NCBI nr
Match: QNT11941.1 (hypothetical chloroplast RF1 [Lycoris aurea])

HSP 1 Score: 68.9 bits (167), Expect = 3.8e-08
Identity = 35/44 (79.55%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 25  EKKVSATTAVEQAIIAKIGEYNQLSLRISSLDQKQARGGIPQRE 69
           E++ +   AV++AIIAKIGEYNQLSLRISSLDQKQARGGIPQRE
Sbjct: 599 EEESAEDPAVKEAIIAKIGEYNQLSLRISSLDQKQARGGIPQRE 642

[Close]
BLAST of Clc11G07535 vs. ExPASy TrEMBL
Match: A0A7H1JKK2 (Protein TIC 214 OS=Lycoris aurea OX=152838 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.8e-08
Identity = 35/44 (79.55%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 25  EKKVSATTAVEQAIIAKIGEYNQLSLRISSLDQKQARGGIPQRE 69
           E++ +   AV++AIIAKIGEYNQLSLRISSLDQKQARGGIPQRE
Sbjct: 599 EEESAEDPAVKEAIIAKIGEYNQLSLRISSLDQKQARGGIPQRE 642

[Close]
BLAST of Clc11G07535 vs. ExPASy TrEMBL
Match: A0A0E0RI64 (Uncharacterized protein OS=Oryza rufipogon OX=4529 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.0e-06
Identity = 32/42 (76.19%), Postives = 35/42 (83.33%), Query Frame = 0 

Query: 28 VSATTAVEQAIIAKIGEYNQLSLRISSLDQKQARGGIPQRER 70
          +    AV++AII K GEYNQL LRISSLDQKQARGGIPQRER
Sbjct: 7  IKINPAVKEAIIPKKGEYNQLLLRISSLDQKQARGGIPQRER 48

The following BLAST results are available for this feature:
BLAST of Clc11G07535 vs. NCBI nr
Match NameE-valueIdentityDescription
QNT11941.13.8e-0879.55hypothetical chloroplast RF1 [Lycoris aurea][more]
BLAST of Clc11G07535 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc11G07535 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7H1JKK21.8e-0879.55Protein TIC 214 OS=Lycoris aurea OX=152838 GN=ycf1 PE=3 SV=1[more]
A0A0E0RI641.0e-0676.19Uncharacterized protein OS=Oryza rufipogon OX=4529 PE=4 SV=1[more]
BLAST of Clc11G07535 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc11G07535.1Clc11G07535.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015031 protein transport
cellular_component GO:0009706 chloroplast inner membrane
cellular_component GO:0016021 integral component of membrane