Clc11G07490 (gene) Watermelon (cordophanus) v2

Overview
NameClc11G07490
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description30S ribosomal protein S12, chloroplastic
LocationClcChr11: 7650012 .. 7650621 (-)
RNA-Seq ExpressionClc11G07490
SyntenyClc11G07490
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTGATCGAAAAATCAATCTGATTTATTTCGTACCTTTCGCTCAATGAAAAAATGGGTCAGATTCTACAGGATCAAACCTATGGGACTTAAGGAATGATCGAAGGGAATAAAAAAAGAAAAAAAAAGAGAGGGAAAAATAAGTAAATAAAAATGACGTAGAAGAGCCCAGATTCCAAATGAATGAAAACGTGACTGAATTGGTCCCGGTCACTCTTCGGGACGGAATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCACGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAG

mRNA sequence

TTTTGATCGAAAAATCAATCTGATTTATTTCGTACCTTTCGCTCAATGAAAAAATGGGTCAGATTCTACAGGATCAAACCTATGGGACTTAAGGAATGATCGAAGGGAATAAAAAAAGAAAAAAAAAGAGAGGGAAAAATAAGTAAATAAAAATGACGTAGAAGAGCCCAGATTCCAAATGAATGAAAACGTGACTGAATTGGTCCCGGTCACTCTTCGGGACGGAATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCACGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAG

Coding sequence (CDS)

ATGAATGAAAACGTGACTGAATTGGTCCCGGTCACTCTTCGGGACGGAATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCACGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAG

Protein sequence

MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Homology
[Close]
BLAST of Clc11G07490 vs. NCBI nr
Match: XP_022932068.1 (uncharacterized protein LOC111438394 [Cucurbita moschata] >XP_023520570.1 uncharacterized protein LOC111783982 [Cucurbita pepo subsp. pepo] >XP_023520572.1 uncharacterized protein LOC111783984 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 278.1 bits (710), Expect = 4.3e-71
Identity = 142/143 (99.30%), Postives = 142/143 (99.30%), Query Frame = 0 

Query: 1   MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSV 60
           MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKIS TVLSSGSKGDLSV
Sbjct: 1   MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV 60

Query: 61  NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRY 120
           NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRY
Sbjct: 61  NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRY 120

Query: 121 HIVRGTLDAVGVKDRQQGRSSAL 144
           HIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 121 HIVRGTLDAVGVKDRQQGRSSAL 143

[Close]
BLAST of Clc11G07490 vs. NCBI nr
Match: XP_038896566.1 (30S ribosomal protein S12, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 270.8 bits (691), Expect = 6.8e-69
Identity = 138/143 (96.50%), Postives = 139/143 (97.20%), Query Frame = 0 

Query: 1   MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSV 60
           MNENVT+LVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSV
Sbjct: 1   MNENVTKLVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSV 60

Query: 61  NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRY 120
           NFSTITPK  NSALRKVARVRLTSGFEI AYIPGIGHNLQEHS VLVRGGRVKDLPGVRY
Sbjct: 61  NFSTITPKNQNSALRKVARVRLTSGFEIIAYIPGIGHNLQEHSAVLVRGGRVKDLPGVRY 120

Query: 121 HIVRGTLDAVGVKDRQQGRSSAL 144
           HIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 121 HIVRGTLDAVGVKDRQQGRSSAL 143

[Close]
BLAST of Clc11G07490 vs. NCBI nr
Match: XP_038902483.1 (30S ribosomal protein S12, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 266.9 bits (681), Expect = 9.8e-68
Identity = 137/143 (95.80%), Postives = 139/143 (97.20%), Query Frame = 0 

Query: 1   MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSV 60
           MNENVTELV VTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLS+
Sbjct: 1   MNENVTELVLVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSI 60

Query: 61  NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRY 120
           NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQE+ VVLVRG RVKDLP VRY
Sbjct: 61  NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEYFVVLVRGERVKDLPNVRY 120

Query: 121 HIVRGTLDAVGVKDRQQGRSSAL 144
           HIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 121 HIVRGTLDAVGVKDRQQGRSSAL 143

[Close]
BLAST of Clc11G07490 vs. NCBI nr
Match: RWR98012.1 (LOW QUALITY PROTEIN: 30S ribosomal protein S12, chloroplastic [Cinnamomum micranthum f. kanehirae])

HSP 1 Score: 252.3 bits (643), Expect = 2.5e-63
Identity = 132/142 (92.96%), Postives = 135/142 (95.07%), Query Frame = 0 

Query: 2   NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVN 61
           +ENVTELV VTLRDG+EEGRRFSNEEKDP+TSKELNEEPYEVKIS T   S SKGDLSVN
Sbjct: 8   HENVTELVLVTLRDGVEEGRRFSNEEKDPITSKELNEEPYEVKISCT---SDSKGDLSVN 67

Query: 62  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYH 121
           FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYH
Sbjct: 68  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYH 127

Query: 122 IVRGTLDAVGVKDRQQGRSSAL 144
           IVRGTLDAVGVKDRQQGRSSAL
Sbjct: 128 IVRGTLDAVGVKDRQQGRSSAL 146

[Close]
BLAST of Clc11G07490 vs. NCBI nr
Match: KAF8091090.1 (hypothetical protein N665_0454s0031, partial [Sinapis alba])

HSP 1 Score: 245.0 bits (624), Expect = 4.0e-61
Identity = 126/142 (88.73%), Postives = 131/142 (92.25%), Query Frame = 0 

Query: 2   NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVN 61
           +ENVTE + VTLRDG+EEGRRF+NEE+DPMTSKELNEEPYE         SGSKGDLSVN
Sbjct: 6   HENVTEFILVTLRDGVEEGRRFANEERDPMTSKELNEEPYE---------SGSKGDLSVN 65

Query: 62  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYH 121
           FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYH
Sbjct: 66  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYH 125

Query: 122 IVRGTLDAVGVKDRQQGRSSAL 144
           IVRGTLDAVGVKDRQQGRSSAL
Sbjct: 126 IVRGTLDAVGVKDRQQGRSSAL 138

[Close]
BLAST of Clc11G07490 vs. ExPASy Swiss-Prot
Match: A4GYN8 (30S ribosomal protein S12-B, chloroplastic OS=Populus trichocarpa OX=3694 GN=rps12-B PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.3e-43
Identity = 89/93 (95.70%), Postives = 90/93 (96.77%), Query Frame = 0 

Query: 48  TVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLV 107
           T + SGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLV
Sbjct: 35  TRVYSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLV 94

Query: 108 RGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 141
           RGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Sbjct: 95  RGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 127

[Close]
BLAST of Clc11G07490 vs. ExPASy Swiss-Prot
Match: A4QJX7 (30S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN=rps12-B PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.2e-38
Identity = 79/86 (91.86%), Postives = 82/86 (95.35%), Query Frame = 0 

Query: 55  KGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD 114
           +G  +  +STITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD
Sbjct: 31  RGTCTRVYSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD 90

Query: 115 LPGVRYHIVRGTLDAVGVKDRQQGRS 141
           LPGVRYHIVRGTLDAVGVKDRQQGRS
Sbjct: 91  LPGVRYHIVRGTLDAVGVKDRQQGRS 116

[Close]
BLAST of Clc11G07490 vs. ExPASy Swiss-Prot
Match: Q1KXY0 (30S ribosomal protein S12, chloroplastic OS=Helianthus annuus OX=4232 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 2.9e-38
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 0 

Query: 64  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 123
           TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 124 RGTLDAVGVKDRQQGRSSAL 144
           RGTLDAVGVKDRQQGRSSAL
Sbjct: 99  RGTLDAVGVKDRQQGRSSAL 118

[Close]
BLAST of Clc11G07490 vs. ExPASy Swiss-Prot
Match: Q332V3 (30S ribosomal protein S12, chloroplastic OS=Lactuca sativa OX=4236 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 2.9e-38
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 0 

Query: 64  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 123
           TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 124 RGTLDAVGVKDRQQGRSSAL 144
           RGTLDAVGVKDRQQGRSSAL
Sbjct: 99  RGTLDAVGVKDRQQGRSSAL 118

[Close]
BLAST of Clc11G07490 vs. ExPASy Swiss-Prot
Match: Q0G9J5 (30S ribosomal protein S12, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 2.9e-38
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 0 

Query: 64  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 123
           TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 124 RGTLDAVGVKDRQQGRSSAL 144
           RGTLDAVGVKDRQQGRSSAL
Sbjct: 99  RGTLDAVGVKDRQQGRSSAL 118

[Close]
BLAST of Clc11G07490 vs. ExPASy TrEMBL
Match: A0A6J1F0L1 (uncharacterized protein LOC111438394 OS=Cucurbita moschata OX=3662 GN=LOC111438394 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.1e-71
Identity = 142/143 (99.30%), Postives = 142/143 (99.30%), Query Frame = 0 

Query: 1   MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSV 60
           MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKIS TVLSSGSKGDLSV
Sbjct: 1   MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV 60

Query: 61  NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRY 120
           NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRY
Sbjct: 61  NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRY 120

Query: 121 HIVRGTLDAVGVKDRQQGRSSAL 144
           HIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 121 HIVRGTLDAVGVKDRQQGRSSAL 143

[Close]
BLAST of Clc11G07490 vs. ExPASy TrEMBL
Match: A0A3S3NSS0 (30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02749900 PE=3 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.2e-63
Identity = 132/142 (92.96%), Postives = 135/142 (95.07%), Query Frame = 0 

Query: 2   NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVN 61
           +ENVTELV VTLRDG+EEGRRFSNEEKDP+TSKELNEEPYEVKIS T   S SKGDLSVN
Sbjct: 8   HENVTELVLVTLRDGVEEGRRFSNEEKDPITSKELNEEPYEVKISCT---SDSKGDLSVN 67

Query: 62  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYH 121
           FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYH
Sbjct: 68  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYH 127

Query: 122 IVRGTLDAVGVKDRQQGRSSAL 144
           IVRGTLDAVGVKDRQQGRSSAL
Sbjct: 128 IVRGTLDAVGVKDRQQGRSSAL 146

[Close]
BLAST of Clc11G07490 vs. ExPASy TrEMBL
Match: A0A6A5N1Q8 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00033867 PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 7.4e-61
Identity = 128/142 (90.14%), Postives = 134/142 (94.37%), Query Frame = 0 

Query: 2   NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVN 61
           +ENVT+LV VTLRDG+EEG RFSNEEKDPMTSKELN+E YEVKIS +VL SGSKGDLSVN
Sbjct: 80  HENVTKLVLVTLRDGVEEGGRFSNEEKDPMTSKELNKESYEVKISCSVLLSGSKGDLSVN 139

Query: 62  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYH 121
           FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEH VVLVRGG VKDLPGVRYH
Sbjct: 140 FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHFVVLVRGG-VKDLPGVRYH 199

Query: 122 IVRGTLDAVGVKDRQQGRSSAL 144
           IVRGTL A+GVKDRQQGRSSAL
Sbjct: 200 IVRGTLYAIGVKDRQQGRSSAL 220

[Close]
BLAST of Clc11G07490 vs. ExPASy TrEMBL
Match: A0A443Q5I9 (30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02780500 PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 9.6e-61
Identity = 127/142 (89.44%), Postives = 130/142 (91.55%), Query Frame = 0 

Query: 2   NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVN 61
           +ENVTELV VTLRDG+EEGRRFSNEEKDP+TSKELNEEPYE         S SKGDLSVN
Sbjct: 8   HENVTELVLVTLRDGVEEGRRFSNEEKDPITSKELNEEPYE---------SDSKGDLSVN 67

Query: 62  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYH 121
           FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYH
Sbjct: 68  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYH 127

Query: 122 IVRGTLDAVGVKDRQQGRSSAL 144
           IVRGTLDAVGVKDRQQGRSSAL
Sbjct: 128 IVRGTLDAVGVKDRQQGRSSAL 140

[Close]
BLAST of Clc11G07490 vs. ExPASy TrEMBL
Match: U5CU38 (Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s02071p00004290 PE=3 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 6.9e-59
Identity = 124/142 (87.32%), Postives = 128/142 (90.14%), Query Frame = 0 

Query: 2   NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVN 61
           +EN TELV VT RDG+EEGRRFS+EEKDP+TSKELNEEPYE         S SKGDLSVN
Sbjct: 8   HENATELVLVTPRDGVEEGRRFSSEEKDPITSKELNEEPYE---------SDSKGDLSVN 67

Query: 62  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYH 121
           FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYH
Sbjct: 68  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYH 127

Query: 122 IVRGTLDAVGVKDRQQGRSSAL 144
           IVRGTLDAVGVKDRQQGRSSAL
Sbjct: 128 IVRGTLDAVGVKDRQQGRSSAL 140

[Close]
BLAST of Clc11G07490 vs. TAIR 10
Match: ATCG00065.1 (ribosomal protein S12A )

HSP 1 Score: 156.8 bits (395), Expect = 1.3e-38
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 64  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 123
           TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 124 RGTLDAVGVKDRQQGRS 141
           RGTLDAVGVKDRQQGRS
Sbjct: 99  RGTLDAVGVKDRQQGRS 115

[Close]
BLAST of Clc11G07490 vs. TAIR 10
Match: ATCG01230.1 (ribosomal protein S12B )

HSP 1 Score: 156.8 bits (395), Expect = 1.3e-38
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 64  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 123
           TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 124 RGTLDAVGVKDRQQGRS 141
           RGTLDAVGVKDRQQGRS
Sbjct: 99  RGTLDAVGVKDRQQGRS 115

[Close]
BLAST of Clc11G07490 vs. TAIR 10
Match: ATCG00905.1 (ribosomal protein S12C )

HSP 1 Score: 156.8 bits (395), Expect = 1.3e-38
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 64  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 123
           TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 124 RGTLDAVGVKDRQQGRS 141
           RGTLDAVGVKDRQQGRS
Sbjct: 99  RGTLDAVGVKDRQQGRS 115

[Close]
BLAST of Clc11G07490 vs. TAIR 10
Match: AT2G07675.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 104.8 bits (260), Expect = 6.0e-23
Identity = 53/103 (51.46%), Postives = 69/103 (66.99%), Query Frame = 0 

Query: 38  EEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGH 97
           EE      +R +     K  +    ST TPKKPNSA RK+A+VRL++  +I A+IPG GH
Sbjct: 13  EEKRRTDRTRALDKCPQKTGVCPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGH 72

Query: 98  NLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 141
           N QEHS VL+RGGRVKD PGV+ H +RG  D +G+  R++GRS
Sbjct: 73  NSQEHSTVLIRGGRVKDSPGVKSHCIRGVKDLMGIPGRRRGRS 115

[Close]
BLAST of Clc11G07490 vs. TAIR 10
Match: ATMG00980.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 104.8 bits (260), Expect = 6.0e-23
Identity = 53/103 (51.46%), Postives = 69/103 (66.99%), Query Frame = 0 

Query: 38  EEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGH 97
           EE      +R +     K  +    ST TPKKPNSA RK+A+VRL++  +I A+IPG GH
Sbjct: 13  EEKRRTDRTRALDKCPQKTGVCPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGH 72

Query: 98  NLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 141
           N QEHS VL+RGGRVKD PGV+ H +RG  D +G+  R++GRS
Sbjct: 73  NSQEHSTVLIRGGRVKDSPGVKSHCIRGVKDLMGIPGRRRGRS 115

The following BLAST results are available for this feature:
BLAST of Clc11G07490 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022932068.14.3e-7199.30uncharacterized protein LOC111438394 [Cucurbita moschata] >XP_023520570.1 unchar... [more]
XP_038896566.16.8e-6996.5030S ribosomal protein S12, chloroplastic-like [Benincasa hispida][more]
XP_038902483.19.8e-6895.8030S ribosomal protein S12, chloroplastic-like [Benincasa hispida][more]
RWR98012.12.5e-6392.96LOW QUALITY PROTEIN: 30S ribosomal protein S12, chloroplastic [Cinnamomum micran... [more]
KAF8091090.14.0e-6188.73hypothetical protein N665_0454s0031, partial [Sinapis alba][more]
BLAST of Clc11G07490 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A4GYN81.3e-4395.7030S ribosomal protein S12-B, chloroplastic OS=Populus trichocarpa OX=3694 GN=rps... [more]
A4QJX72.2e-3891.8630S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN... [more]
Q1KXY02.9e-3898.7530S ribosomal protein S12, chloroplastic OS=Helianthus annuus OX=4232 GN=rps12-A... [more]
Q332V32.9e-3898.7530S ribosomal protein S12, chloroplastic OS=Lactuca sativa OX=4236 GN=rps12-A PE... [more]
Q0G9J52.9e-3898.7530S ribosomal protein S12, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=r... [more]
BLAST of Clc11G07490 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1F0L12.1e-7199.30uncharacterized protein LOC111438394 OS=Cucurbita moschata OX=3662 GN=LOC1114383... [more]
A0A3S3NSS01.2e-6392.9630S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae O... [more]
A0A6A5N1Q87.4e-6190.14Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00033867 PE=3 SV=1[more]
A0A443Q5I99.6e-6189.4430S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae O... [more]
U5CU386.9e-5987.32Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s02071p00004290... [more]
BLAST of Clc11G07490 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00065.11.3e-38100.00ribosomal protein S12A [more]
ATCG01230.11.3e-38100.00ribosomal protein S12B [more]
ATCG00905.11.3e-38100.00ribosomal protein S12C [more]
AT2G07675.16.0e-2351.46Ribosomal protein S12/S23 family protein [more]
ATMG00980.16.0e-2351.46Ribosomal protein S12/S23 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006032Ribosomal protein S12/S23PRINTSPR01034RIBOSOMALS12coord: 102..119
score: 88.58
coord: 119..135
score: 64.3
coord: 135..143
score: 32.37
coord: 67..82
score: 91.32
coord: 83..102
score: 75.14
IPR006032Ribosomal protein S12/S23PFAMPF00164Ribosom_S12_S23coord: 58..138
e-value: 5.1E-30
score: 103.4
IPR006032Ribosomal protein S12/S23PANTHERPTHR1165230S RIBOSOMAL PROTEIN S12 FAMILY MEMBERcoord: 33..142
IPR006032Ribosomal protein S12/S23PROSITEPS00055RIBOSOMAL_S12coord: 68..75
NoneNo IPR availableGENE3D2.40.50.140coord: 11..142
e-value: 2.2E-46
score: 158.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..35
NoneNo IPR availablePANTHERPTHR11652:SF5230S RIBOSOMAL PROTEIN S12-Bcoord: 33..142
IPR005679Ribosomal protein S12, bacterial-typeTIGRFAMTIGR00981TIGR00981coord: 52..140
e-value: 1.9E-46
score: 154.9
IPR005679Ribosomal protein S12, bacterial-typeCDDcd03368Ribosomal_S12coord: 64..135
e-value: 8.57105E-54
score: 163.073
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 60..140

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc11G07490.1Clc11G07490.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome