Clc11G07170 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGATATGGGGCATGGGTTGTTCGGTAAGGCCGGAGAAAAGTCTAGAGATTAACAGAAGCAAAAGCAGGCGTTAGAATTTGACCAGAGGAAAAAACTACGTCGTTCTGATCATTCAACTCCTTTTACCCAAAGCCTGCCTTACTAGGAAGCGAAACGAAAGACGGGTCAGACAGCAACTCAACGCGTCCGAGTCACTCCCTCACTCGACTCGCTCCCTCATCTTCTCCGTCGCCACACCACAGCCGGGTTTTTCATTTTCACACAATTTTAAGAGACCCCATCATCAAAACTTTTCGATTCAAAGCAAACCTTGTCGTTTTTGGTCCTACACAATCAACCCCATTTACTCGATTCTGTTCTGTAAGTCTCGGTTCCTTTGTCATGGATCATTCTGGTTAGATTATTTGCTGATCCCTCTTCTCTTATGCCTTCTATTTCTTTGGATTCGGTTTCTGGGGTTCTTTAATTGAGTGATTGTTTTATCTTTTGAATTTCACTTGTTTAACTGTCATCGAAGCTTATACTTATAGGGCTGTAGAATTGTTGCGTCTGTTTGATTCTGTTTATCGAATAATGTTTTCTCTACATTTGATTATTTTTGGGACTTGGTTGTGAATGTCGACAATTGAGAATTTAGATGAAAAGAATTCGAAGCTGATCTGGTACCCAGTAGTTCTGATTTCGAAGTTGAGCATTTGCATTTTAGTGGAGACCTCAATCTCTTAAATATTGGATGTATGTATGCACTGGAGTCTGAGTGTACTCATCTTACAGTCCTTTGGTTCCATTGGATGCCCAAATGATGGAAAATGTCTGGTGTACTTCTTGATGTCTTTTCACTTTTCAGACAATGCAGTTCCTTTCCTCGAGGGTTTTCAGGATTAATCTGTTGTCGTCTATGTTGTCTGAAGGAATCAATTAATTTTAGTTATCTAATCTTTATGAAGCAGATGGTCAGCTCACGATTGAGGCTTAGGCATTGAATTTGACAACTAAGAAATAATTTGTTGGGAATTCTGTGCTCTTCTTGTTGAATTGCACATGTACTGGATGCGCATATGAACATGTCAATACTTGCAAGAACTTCAAACTCGTTGAAATTATCTAGATTATATTTTGTTATATGAGTGGTTTATTGTTTAGCCATGGACATTACATCTGTACATTTATATGGTTAAAGGAATGTCATAGTTTAGGCTATAATGAGTCTTCGATTATTTAAACTTCACTTCTTGTGTTATTTGTTCGTTGAATAATCCATCGGGGCTGAGAATGATAAAAGATTGGTTAGCGTAGTAAGGAGAATGGGGAATTGTTTTATTTGTCTATTAAGATACTGGAGCCTCTTTCTCCTTGAGTTCTTTAGATTATTACCATAAGTTCATATGACTTTCATTCTGTAGATTCACATAACTTCAAAATCAACTAGCTGTTGCAACTATTGCAGACATGAGTTTTGTTTTCCGTGGAACGAGAGTTCCAGACATTGAAAATGGTCTATCTGGATTTATACCCGAACGACGTGCAATGGTATGCTCAATTTTTTGTACTCTTGATAATACCAACGCTTGGAAATTTGTAGATATTGCAATAGCTATGATTCTAATTTTAAAAAAAATATTTTTTTCTGCTCATAATCAGCGGGTTCATGCAGCACGTCCTGTTAACTCAAACTCACTTGCCTTTCTTGTCACAGGTACCATTTCACCTATGTGCCGACTGATATCTGTTTCGTGTGATAATTTTGATCTTTTGCATTGTTTTAACTCTTGACTTTGTTGCAGTCCTTTTGTTATTCATGATATTAAATTCTCACCAGATGTCACCGAACTTTCTGGTGAGTTTCATATTCCAAACAGTGAATAAGTAGTAGATTGATCTTACTCTCATCGTTGATACAAATCTTTACATTTTCTTCCTTTGAACATGCATATTTAGCTCTGGCTTGTGCTTGGTGTCTTTTTGATGGCTACAACATTAAGGATGTACGCAACTTGTCAACAACTTCAGGCTCAAGCCCAAGCTAGAGCTATGGCAGCCAGTGGCCTTCTCGGTCACACTGAATTGAGGTTACATATGCCACCATCAATAGCACTTGCAACTAGAGGGCGTTTACAGGGGCTAAGGCTTCAACTTGCTCTGCTAGATCGAGAATTCGATGATCTAGGTATGGTTCAAATCTAAAAGTGCAAGTTCGTAGCTTCAAATTTAGTCATACATGGCTACCATTCTTTTACATTCTTTTAGTGTACTGCTTTCACCTACTATCAACAATATTTTGTTAGGAACCGAGGTAGTATGGGCTACTTTTCCCACATCGGTTAGAATGGGATGTCCAGTGTGGTACTTAAGTGGCTTGGCTCTCTTACTTCAATAGCTGGCTTTTGGGGTGTAGTTCTCCTTGTTGCTTGGAGTACCTAATGATGGTATTAGAGCCGGTTGTCGACGTTCCAAAGAGGAGCACTGGTGGCAGGTTCTGACTGGGTGTTTTCGAGTGAAGTATCATCAGTTTACCCGCTGGGACGTTGACTTTTCGAGGATGGACTATTGTTAGGAACTAAGGTAGTATGGGCTTCCTTTGTTCCACATCGGTTAGAATGGAATGACCAATGTGGTACTCAAGTGGCTTGGATCTCTCACCTTAATAGCTAGTTTTTAGGGTGCGGTTCTCCGAGGTGCTTAAGTACCTAACACATTTTTCAGTGGCAAAATCTCGTGTGTGTGCGTATGTGTGGGGGGAATTTAAGACTGAAGTATCCACTTCATGGCAAAATTTTGGGGAAACTTTTCGATTGGATTTCCTTGACAAGATTTTGAAGTGTCATAATTTTGATGTGGGTTTTTGAAAATGCAAGAAATTCACTCCTTTCATAGCCAAACTCGGGGAATTTTTTGTTGTTCAGACTTCTTTGGCAAGGTTCTGACATGATGACAAGCTTGCGGTAAATGCATGAGACAATAGGATAGAATCGGTGCATTTCATGTTGTCAATTGTTGAAAAGAAAGTACCCTGAACTTGCTTCTGACAGTATGGTTGGGATGGAAGTACCTCGAGAAACTTTAAAATTGTTGGGTTTCTTCTTATTTTAAACTTTTTTAAAGCTCGTCATCATTGTCTTTTGAGTTTCATGTTATATATTATCAATGATGCTGTATTAAACATGTCGTTATCTTCAGATTATGAAACTTTGAGAGCTTTGGATTCTGACAATGCTCCGACAACACCTTCTATGAGTGAGGAACAAATCAATGCTCTTCCCGTTCATAAATACAAGGTTTCTGGTCCTCAAAGGTAATCAATCCCATATTAGTCTACATTCCAGAATGAATTAGGGTATTTGTTGCTTTACTTTAAGTTTGATTGGAAGCCAAATTCTGTACTGAGAAATTTTTAAACGATGAAATATGTGTACTCCAGCTTGTCACAAAAAAACTAAAATTAAAGTTCATTAAATTATCTGCAGCGACCCCTCTGTAAATCAGCAGGCTTCATCTTCAGAATCTAACGAGGTATCTATAAGGTTACTTTTGCCTTGCATTTTTTTATTCTTTTATTGCCTTAAACGGTGTGTACAAGATTACAAATACAATAATGACTCGTTTTGGAAGGAAATATAGTGCAGAAGAGAGACAGAAGGCCAAAATTTTCCAATTCTTTAGCTTATTGTTTGTATACCACACTCTTTCTCATCAGTTATCTATTTCATGTACTGTTTTTCAATTTTGATTGCAGAAGAGACAAGATTCAGTTAATGCAGTTGGGGGTACCAAGACCTCTGAGGATGAACTCACATGCAGTGTTTGCTTGGAGCAAGTAAATGTTGGTGAACTCATACGTAGTTTGCCATGTTTACATCAGGTCTTTATCTTTATCCCTTCTTTCCTTCCAAACAAGTGGTTCCTAATATTTCATATTGAAAATTCAGGAATTTGGTTTTTTGTTATTATTACTTGTCGTGGTTTCATTTTGTTTGTCTTTTTTGAAAGCCGCTTGCAGTCGCTCTTCCCTTAAATTTTGATACACCTAATTTGAATTTGGTTAAACATCTTGTAGTTCCATGCCAACTGCATAGATCCATGGCTGCGACAGCAGGGAACGTGCCCTGTTTGTAAATTCCGAGCGGTGTCTGGGTGGTCAGAGCAGGGGCAAGGAGAAACTGATGCTTATATGGTTTAATTTGGATGCAAAGCAAGTTATCGAACGACGCTTGACAGTGTCCGATTAAAGAGCAGAGGATATGGATAGACGTGGTGTAATTAGGTTAAGGGTAGGCATTAAAGGAATTGCAGTTGCCGTTCTGTATCTTTGTATTTCTGACGAGCCATTTAATTGTATTCTT ATGATATGGGGCATGGGTTGTTCGGTAAGGCCGGAGAAAAGTCTAGAGATTAACAGAAGCAAAAGCAGGCGAAAAAACTACGTCGTTCTGATCATTCAACTCCTTTTACCCAAAGCCTGCCTTACTAGGAAGCGAAACGAAAGACGGGTCAGACAGCAACTCAACGCGTCCGAGTCACTCCCTCACTCGACTCGCTCCCTCATCTTCTCCGTCGCCACACCACAGCCGGGTTTTTCATTTTCACACAATTTTAAGAGACCCCATCATCAAAACTTTTCGATTCAAAGCAAACCTTGTCGTTTTTGGTCCTACACAATCAACCCCATTTACTCGATTCTGTTCTACATGAGTTTTGTTTTCCGTGGAACGAGAGTTCCAGACATTGAAAATGGTCTATCTGGATTTATACCCGAACGACGTGCAATGCGGGTTCATGCAGCACGTCCTGTTAACTCAAACTCACTTGCCTTTCTTGTCACAGTCCTTTTGTTATTCATGATATTAAATTCTCACCAGATGTCACCGAACTTTCTGCTCTGGCTTGTGCTTGGTGTCTTTTTGATGGCTACAACATTAAGGATGTACGCAACTTGTCAACAACTTCAGGCTCAAGCCCAAGCTAGAGCTATGGCAGCCAGTGGCCTTCTCGGTCACACTGAATTGAGGTTACATATGCCACCATCAATAGCACTTGCAACTAGAGGGCGTTTACAGGGGCTAAGGCTTCAACTTGCTCTGCTAGATCGAGAATTCGATGATCTAGATTATGAAACTTTGAGAGCTTTGGATTCTGACAATGCTCCGACAACACCTTCTATGAGTGAGGAACAAATCAATGCTCTTCCCGTTCATAAATACAAGGTTTCTGGTCCTCAAAGCGACCCCTCTGTAAATCAGCAGGCTTCATCTTCAGAATCTAACGAGAAGAGACAAGATTCAGTTAATGCAGTTGGGGGTACCAAGACCTCTGAGGATGAACTCACATGCAGTGTTTGCTTGGAGCAAGTAAATGTTGGTGAACTCATACGTAGTTTGCCATGTTTACATCAGTTCCATGCCAACTGCATAGATCCATGGCTGCGACAGCAGGGAACGTGCCCTGTTTGTAAATTCCGAGCGGTGTCTGGGTGGTCAGAGCAGGGGCAAGGAGAAACTGATGCTTATATGGTTTAATTTGGATGCAAAGCAAGTTATCGAACGACGCTTGACAGTGTCCGATTAAAGAGCAGAGGATATGGATAGACGTGGTGTAATTAGGTTAAGGGTAGGCATTAAAGGAATTGCAGTTGCCGTTCTGTATCTTTGTATTTCTGACGAGCCATTTAATTGTATTCTT ATGATATGGGGCATGGGTTGTTCGGTAAGGCCGGAGAAAAGTCTAGAGATTAACAGAAGCAAAAGCAGGCGAAAAAACTACGTCGTTCTGATCATTCAACTCCTTTTACCCAAAGCCTGCCTTACTAGGAAGCGAAACGAAAGACGGGTCAGACAGCAACTCAACGCGTCCGAGTCACTCCCTCACTCGACTCGCTCCCTCATCTTCTCCGTCGCCACACCACAGCCGGGTTTTTCATTTTCACACAATTTTAAGAGACCCCATCATCAAAACTTTTCGATTCAAAGCAAACCTTGTCGTTTTTGGTCCTACACAATCAACCCCATTTACTCGATTCTGTTCTACATGAGTTTTGTTTTCCGTGGAACGAGAGTTCCAGACATTGAAAATGGTCTATCTGGATTTATACCCGAACGACGTGCAATGCGGGTTCATGCAGCACGTCCTGTTAACTCAAACTCACTTGCCTTTCTTGTCACAGTCCTTTTGTTATTCATGATATTAAATTCTCACCAGATGTCACCGAACTTTCTGCTCTGGCTTGTGCTTGGTGTCTTTTTGATGGCTACAACATTAAGGATGTACGCAACTTGTCAACAACTTCAGGCTCAAGCCCAAGCTAGAGCTATGGCAGCCAGTGGCCTTCTCGGTCACACTGAATTGAGGTTACATATGCCACCATCAATAGCACTTGCAACTAGAGGGCGTTTACAGGGGCTAAGGCTTCAACTTGCTCTGCTAGATCGAGAATTCGATGATCTAGATTATGAAACTTTGAGAGCTTTGGATTCTGACAATGCTCCGACAACACCTTCTATGAGTGAGGAACAAATCAATGCTCTTCCCGTTCATAAATACAAGGTTTCTGGTCCTCAAAGCGACCCCTCTGTAAATCAGCAGGCTTCATCTTCAGAATCTAACGAGAAGAGACAAGATTCAGTTAATGCAGTTGGGGGTACCAAGACCTCTGAGGATGAACTCACATGCAGTGTTTGCTTGGAGCAAGTAAATGTTGGTGAACTCATACGTAGTTTGCCATGTTTACATCAGTTCCATGCCAACTGCATAGATCCATGGCTGCGACAGCAGGGAACGTGCCCTGTTTGTAAATTCCGAGCGGTGTCTGGGTGGTCAGAGCAGGGGCAAGGAGAAACTGATGCTTATATGGTTTAA MIWGMGCSVRPEKSLEINRSKSRRKNYVVLIIQLLLPKACLTRKRNERRVRQQLNASESLPHSTRSLIFSVATPQPGFSFSHNFKRPHHQNFSIQSKPCRFWSYTINPIYSILFYMSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRGRLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDPSVNQQASSSESNEKRQDSVNAVGGTKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAYMV Homology
BLAST of Clc11G07170 vs. NCBI nr
Match: KGN45732.1 (hypothetical protein Csa_005578 [Cucumis sativus]) HSP 1 Score: 611.3 bits (1575), Expect = 5.8e-171 Identity = 322/361 (89.20%), Postives = 329/361 (91.14%), Query Frame = 0
BLAST of Clc11G07170 vs. NCBI nr
Match: XP_008441380.1 (PREDICTED: E3 ubiquitin-protein ligase SDIR1 [Cucumis melo] >ADN34069.1 protein binding protein [Cucumis melo subsp. melo]) HSP 1 Score: 534.3 bits (1375), Expect = 9.0e-148 Identity = 273/275 (99.27%), Postives = 273/275 (99.27%), Query Frame = 0
BLAST of Clc11G07170 vs. NCBI nr
Match: XP_038885371.1 (E3 ubiquitin-protein ligase SDIR1 isoform X1 [Benincasa hispida] >XP_038885372.1 E3 ubiquitin-protein ligase SDIR1 isoform X1 [Benincasa hispida] >XP_038885373.1 E3 ubiquitin-protein ligase SDIR1 isoform X1 [Benincasa hispida] >XP_038885374.1 E3 ubiquitin-protein ligase SDIR1 isoform X1 [Benincasa hispida]) HSP 1 Score: 533.1 bits (1372), Expect = 2.0e-147 Identity = 272/275 (98.91%), Postives = 272/275 (98.91%), Query Frame = 0
BLAST of Clc11G07170 vs. NCBI nr
Match: XP_023551037.1 (E3 ubiquitin-protein ligase SDIR1 [Cucurbita pepo subsp. pepo] >XP_023551039.1 E3 ubiquitin-protein ligase SDIR1 [Cucurbita pepo subsp. pepo] >XP_023551040.1 E3 ubiquitin-protein ligase SDIR1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 531.9 bits (1369), Expect = 4.5e-147 Identity = 270/275 (98.18%), Postives = 272/275 (98.91%), Query Frame = 0
BLAST of Clc11G07170 vs. NCBI nr
Match: XP_022938667.1 (E3 ubiquitin-protein ligase SDIR1 [Cucurbita moschata] >XP_022938669.1 E3 ubiquitin-protein ligase SDIR1 [Cucurbita moschata] >XP_022938670.1 E3 ubiquitin-protein ligase SDIR1 [Cucurbita moschata] >KAG6578411.1 E3 ubiquitin-protein ligase SDIR1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 530.0 bits (1364), Expect = 1.7e-146 Identity = 269/275 (97.82%), Postives = 271/275 (98.55%), Query Frame = 0
BLAST of Clc11G07170 vs. ExPASy Swiss-Prot
Match: Q9M2S6 (E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana OX=3702 GN=SDIR1 PE=1 SV=1) HSP 1 Score: 410.6 bits (1054), Expect = 2.0e-113 Identity = 219/273 (80.22%), Postives = 237/273 (86.81%), Query Frame = 0
BLAST of Clc11G07170 vs. ExPASy Swiss-Prot
Match: Q68DV7 (E3 ubiquitin-protein ligase RNF43 OS=Homo sapiens OX=9606 GN=RNF43 PE=1 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 1.3e-11 Identity = 28/61 (45.90%), Postives = 40/61 (65.57%), Query Frame = 0
BLAST of Clc11G07170 vs. ExPASy Swiss-Prot
Match: Q10R93 (Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0167500 PE=2 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 8.3e-11 Identity = 35/70 (50.00%), Postives = 42/70 (60.00%), Query Frame = 0
BLAST of Clc11G07170 vs. ExPASy Swiss-Prot
Match: Q5NCP0 (E3 ubiquitin-protein ligase RNF43 OS=Mus musculus OX=10090 GN=Rnf43 PE=1 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 8.3e-11 Identity = 24/48 (50.00%), Postives = 34/48 (70.83%), Query Frame = 0
BLAST of Clc11G07170 vs. ExPASy Swiss-Prot
Match: Q8NC42 (E3 ubiquitin-protein ligase RNF149 OS=Homo sapiens OX=9606 GN=RNF149 PE=2 SV=2) HSP 1 Score: 68.2 bits (165), Expect = 2.4e-10 Identity = 29/60 (48.33%), Postives = 36/60 (60.00%), Query Frame = 0
BLAST of Clc11G07170 vs. ExPASy TrEMBL
Match: A0A0A0KBF9 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G008630 PE=4 SV=1) HSP 1 Score: 611.3 bits (1575), Expect = 2.8e-171 Identity = 322/361 (89.20%), Postives = 329/361 (91.14%), Query Frame = 0
BLAST of Clc11G07170 vs. ExPASy TrEMBL
Match: E5GC70 (Protein binding protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1) HSP 1 Score: 534.3 bits (1375), Expect = 4.4e-148 Identity = 273/275 (99.27%), Postives = 273/275 (99.27%), Query Frame = 0
BLAST of Clc11G07170 vs. ExPASy TrEMBL
Match: A0A1S3B3A3 (E3 ubiquitin-protein ligase SDIR1 OS=Cucumis melo OX=3656 GN=LOC103485511 PE=4 SV=1) HSP 1 Score: 534.3 bits (1375), Expect = 4.4e-148 Identity = 273/275 (99.27%), Postives = 273/275 (99.27%), Query Frame = 0
BLAST of Clc11G07170 vs. ExPASy TrEMBL
Match: A0A6J1FER7 (E3 ubiquitin-protein ligase SDIR1 OS=Cucurbita moschata OX=3662 GN=LOC111444825 PE=4 SV=1) HSP 1 Score: 530.0 bits (1364), Expect = 8.2e-147 Identity = 269/275 (97.82%), Postives = 271/275 (98.55%), Query Frame = 0
BLAST of Clc11G07170 vs. ExPASy TrEMBL
Match: A0A6J1JZS1 (E3 ubiquitin-protein ligase SDIR1-like OS=Cucurbita maxima OX=3661 GN=LOC111488912 PE=4 SV=1) HSP 1 Score: 526.9 bits (1356), Expect = 7.0e-146 Identity = 267/275 (97.09%), Postives = 270/275 (98.18%), Query Frame = 0
BLAST of Clc11G07170 vs. TAIR 10
Match: AT3G55530.1 (RING/U-box superfamily protein ) HSP 1 Score: 410.6 bits (1054), Expect = 1.4e-114 Identity = 219/273 (80.22%), Postives = 237/273 (86.81%), Query Frame = 0
BLAST of Clc11G07170 vs. TAIR 10
Match: AT1G04790.1 (RING/U-box superfamily protein ) HSP 1 Score: 72.4 bits (176), Expect = 9.0e-13 Identity = 43/124 (34.68%), Postives = 60/124 (48.39%), Query Frame = 0
BLAST of Clc11G07170 vs. TAIR 10
Match: AT5G66070.1 (RING/U-box superfamily protein ) HSP 1 Score: 67.4 bits (163), Expect = 2.9e-11 Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 0
BLAST of Clc11G07170 vs. TAIR 10
Match: AT5G66070.2 (RING/U-box superfamily protein ) HSP 1 Score: 67.4 bits (163), Expect = 2.9e-11 Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 0
BLAST of Clc11G07170 vs. TAIR 10
Match: AT1G80400.1 (RING/U-box superfamily protein ) HSP 1 Score: 67.0 bits (162), Expect = 3.8e-11 Identity = 35/109 (32.11%), Postives = 57/109 (52.29%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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