Clc11G06020 (gene) Watermelon (cordophanus) v2

Overview
NameClc11G06020
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionComponent of oligomeric Golgi complex 2
LocationClcChr11: 5894689 .. 5896480 (+)
RNA-Seq ExpressionClc11G06020
SyntenyClc11G06020
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CGGTAGTTGATGGTTTAAATTCCAGTCTCCTGCATGAACAAATCTTCTATCCTCTCCAAAATTTGGTATATCGATCCGTGATCTCAATCTGACGTCTCCATTTTCATCGTTCAAAGTTCTTTGGAGATTGTTCAGGACGTTCGCCACTATTTGAAGCGACCGGAGAACTACTAGGAAAACCAAATACCATGGCGGATCTCATTCCACCACCACATAGATCGGCCAACGACTTCTTTTCCGATCCACTTGATTCTCATCCTCTCTGGTTCAAGCCCGACCTATTTCTCTCCCCGAATTTTGATTCCGAGTCCTACATATCTGAGCTTCGAACATTTGTCCCATTTGACACTCTCCGATCTCAGCTCCACTCTCATCTTTCCGCTCTGAACCGTGAGCTCATTGACTTGATCAATCGTGATTATACCGATTTTGTCAACCTGAGCACAAAGCTGGTCGATGTGGAAGCGGCAGTCGTACGAATGCGAGCTCCTTTGGTTGAACTCAGGGAGAAAATTGAGCAATTCAGGGGTTCCGTGGAGTTCTCTCTATCAGCTTTGCAGAATGGATTGCGGCAGAGATCAGAGGCAGCATCGGCCAGAGAGGTCTTGGAATTGTTGCTCGATACATTTCACGTCGTCTCGAAGGTAGCGTGTGCTTTCGAATTTCATTTTGATGGGATATGGCATCCATGACTAGGGTAGAGTGCATTTCAGTTGGAATTTCGAATTCCAAAATGTCTGAGAAGTTTTTAGAGAGTTGCGTCGACTGGAATATAGAGTGTCGACTACCAATTCACTTCCTAGTTCTCACGAATGCCGGAAACAAGTTTGTTTAGAGTAGTAGTATTCATCGGACCTGTGTAACACAAATAGGTCGTGTATGAGTTTAGCAGAAGGGAAAGTGTGCCAGAATTGGTAAGTTTTGATCTCTTATAGGTGTTTAATATAATTCCGATGGAATTTGATATGTTCCAAAGCTTTCTCATGAACTTTCTTGTGCATTTCGATGTCATCATTGTATGTGTTGTTTAAACTCCAGACTTTCTAGGATTGGCACCATCTGGAGAATAGAATGGAAAAAGAACTGTTTTAACATTTATAGAATTGTCTTGTTCCATTGTTGAAAGAGAACTTCACCATAGAGAAAAGGCTGGACAAGGAAAGTCAAATTTCACACAAGTTTGTCAAGTCTCTTTCTCTCTCTAATTGATATGCTTATAAATACATTCATGTTGCTTTCATGTTTATACCCACAAGTAGATATAGAGAGCTTAACTAAGGGGCGATATAAAGTTGGTCTCTCCTCTCTCCCTTTTCCTTATGGCCATTCTCTGCCCATTCTCCACCTTCTCGGTTTCAGATCTTTTCCTTTTCAAGGTTGAGTAAGTTGGAGGTTAAAAGTTGTTGTATTAACAATAACTACTTCTGTATTTGGCAAGATCAAGATGGATATTTTTTGGAAGACTTTAAGCTTCATCAGAAGACTTTCATTTCAAAACCAATGCTCTGGTGGCTTTTAGCAGGAGTGCTAGATCTGACTCATCTCCCTCAATCCTATTTTTACAAAAAGGAAAAGTGGATCTTGGAGTTATGCGTTTATCTAAGTTTAGGTCTTCAAAAGAATGGTTTATTGAATGTGCTGTTTGGCCTTCTTCGGGAGGTAGGAATAATTTAATATTCCTTTAGGTGAAATCAGTAGAGCTGGTTGGACTTCAAGGTTTTGCTCAGTGAAAGTGTTAGTCTTGTTAATGAATCAAGAGAGGAAAAGGCATCTTCCATTGTCCCAGCTGTGA

mRNA sequence

CGGTAGTTGATGGTTTAAATTCCAGTCTCCTGCATGAACAAATCTTCTATCCTCTCCAAAATTTGGTATATCGATCCGTGATCTCAATCTGACGTCTCCATTTTCATCGTTCAAAGTTCTTTGGAGATTGTTCAGGACGTTCGCCACTATTTGAAGCGACCGGAGAACTACTAGGAAAACCAAATACCATGGCGGATCTCATTCCACCACCACATAGATCGGCCAACGACTTCTTTTCCGATCCACTTGATTCTCATCCTCTCTGGTTCAAGCCCGACCTATTTCTCTCCCCGAATTTTGATTCCGAGTCCTACATATCTGAGCTTCGAACATTTGTCCCATTTGACACTCTCCGATCTCAGCTCCACTCTCATCTTTCCGCTCTGAACCGTGAGCTCATTGACTTGATCAATCGTGATTATACCGATTTTGTCAACCTGAGCACAAAGCTGGTCGATGTGGAAGCGGCAGTCGTACGAATGCGAGCTCCTTTGGTTGAACTCAGGGAGAAAATTGAGCAATTCAGGGGTTCCGTGGAGTTCTCTCTATCAGCTTTGCAGAATGGATTGCGGCAGAGATCAGAGGCAGCATCGGCCAGAGAGGTCTTGGAATTGTTGCTCGATACATTTCACGTCGTCTCGAAGGTCGTGTATGAGTTTAGCAGAAGGGAAAGTGTGCCAGAATTGATCTTTTCCTTTTCAAGGTTGAGTGAAATCAGTAGAGCTGGTTGGACTTCAAGGTTTTGCTCAGTGAAAGTGTTAGTCTTGTTAATGAATCAAGAGAGGAAAAGGCATCTTCCATTGTCCCAGCTGTGA

Coding sequence (CDS)

ATGGCGGATCTCATTCCACCACCACATAGATCGGCCAACGACTTCTTTTCCGATCCACTTGATTCTCATCCTCTCTGGTTCAAGCCCGACCTATTTCTCTCCCCGAATTTTGATTCCGAGTCCTACATATCTGAGCTTCGAACATTTGTCCCATTTGACACTCTCCGATCTCAGCTCCACTCTCATCTTTCCGCTCTGAACCGTGAGCTCATTGACTTGATCAATCGTGATTATACCGATTTTGTCAACCTGAGCACAAAGCTGGTCGATGTGGAAGCGGCAGTCGTACGAATGCGAGCTCCTTTGGTTGAACTCAGGGAGAAAATTGAGCAATTCAGGGGTTCCGTGGAGTTCTCTCTATCAGCTTTGCAGAATGGATTGCGGCAGAGATCAGAGGCAGCATCGGCCAGAGAGGTCTTGGAATTGTTGCTCGATACATTTCACGTCGTCTCGAAGGTCGTGTATGAGTTTAGCAGAAGGGAAAGTGTGCCAGAATTGATCTTTTCCTTTTCAAGGTTGAGTGAAATCAGTAGAGCTGGTTGGACTTCAAGGTTTTGCTCAGTGAAAGTGTTAGTCTTGTTAATGAATCAAGAGAGGAAAAGGCATCTTCCATTGTCCCAGCTGTGA

Protein sequence

MADLIPPPHRSANDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRAPLVELREKIEQFRGSVEFSLSALQNGLRQRSEAASAREVLELLLDTFHVVSKVVYEFSRRESVPELIFSFSRLSEISRAGWTSRFCSVKVLVLLMNQERKRHLPLSQL
Homology
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BLAST of Clc11G06020 vs. NCBI nr
Match: XP_038884882.1 (LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 2 [Benincasa hispida])

HSP 1 Score: 298.5 bits (763), Expect = 4.4e-77
Identity = 153/164 (93.29%), Postives = 155/164 (94.51%), Query Frame = 0 

Query: 1   MADLIPPPHRSANDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLH 60
           MADLIPPPHRSANDFFSDPLDSHPLWFKPDLFLSPNFDSESY+S+LRTFVPFDTLRSQLH
Sbjct: 1   MADLIPPPHRSANDFFSDPLDSHPLWFKPDLFLSPNFDSESYVSDLRTFVPFDTLRSQLH 60

Query: 61  SHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRAPLVELREKIEQFRGSVEFSL 120
           SHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRAPLVELREKIEQFRGSVEFSL
Sbjct: 61  SHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRAPLVELREKIEQFRGSVEFSL 120

Query: 121 SALQNGLRQRSEAASAREVLELLLDTFHVVSKVVYEFSRRESVP 165
           SALQNGLRQRSEAASAREVLELLLDTFHVVSKV        S P
Sbjct: 121 SALQNGLRQRSEAASAREVLELLLDTFHVVSKVEKLIKELPSAP 164

[Close]
BLAST of Clc11G06020 vs. NCBI nr
Match: XP_031743585.1 (conserved oligomeric Golgi complex subunit 2 [Cucumis sativus] >KGN45847.1 hypothetical protein Csa_004794 [Cucumis sativus])

HSP 1 Score: 297.7 bits (761), Expect = 7.6e-77
Identity = 154/164 (93.90%), Postives = 154/164 (93.90%), Query Frame = 0 

Query: 1   MADLIPPPHRSANDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLH 60
           MADLIPPPHRSAND FSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLH
Sbjct: 1   MADLIPPPHRSANDLFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLH 60

Query: 61  SHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRAPLVELREKIEQFRGSVEFSL 120
           SHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRAPLVELREKIEQFRGSVEFSL
Sbjct: 61  SHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRAPLVELREKIEQFRGSVEFSL 120

Query: 121 SALQNGLRQRSEAASAREVLELLLDTFHVVSKVVYEFSRRESVP 165
           SALQNGLRQRSEAASAREVLELLLDTFHVVSKV        S P
Sbjct: 121 SALQNGLRQRSEAASAREVLELLLDTFHVVSKVEKLIKELPSAP 164

[Close]
BLAST of Clc11G06020 vs. NCBI nr
Match: KAG7019738.1 (Conserved oligomeric Golgi complex subunit 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 296.2 bits (757), Expect = 2.2e-76
Identity = 153/164 (93.29%), Postives = 153/164 (93.29%), Query Frame = 0 

Query: 1   MADLIPPPHRSANDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLH 60
           MADLIPPPHRS NDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLH
Sbjct: 1   MADLIPPPHRSTNDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLH 60

Query: 61  SHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRAPLVELREKIEQFRGSVEFSL 120
           SHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRAPLVELREKIEQFR SVEFSL
Sbjct: 61  SHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRAPLVELREKIEQFRASVEFSL 120

Query: 121 SALQNGLRQRSEAASAREVLELLLDTFHVVSKVVYEFSRRESVP 165
           SALQNGLRQRSEAASAREVLELLLDTFHVVSKV        S P
Sbjct: 121 SALQNGLRQRSEAASAREVLELLLDTFHVVSKVEKLIKELPSAP 164

[Close]
BLAST of Clc11G06020 vs. NCBI nr
Match: KAG6584147.1 (Conserved oligomeric Golgi complex subunit 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 296.2 bits (757), Expect = 2.2e-76
Identity = 153/164 (93.29%), Postives = 153/164 (93.29%), Query Frame = 0 

Query: 1    MADLIPPPHRSANDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLH 60
            MADLIPPPHRS NDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLH
Sbjct: 1227 MADLIPPPHRSTNDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLH 1286

Query: 61   SHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRAPLVELREKIEQFRGSVEFSL 120
            SHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRAPLVELREKIEQFR SVEFSL
Sbjct: 1287 SHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRAPLVELREKIEQFRASVEFSL 1346

Query: 121  SALQNGLRQRSEAASAREVLELLLDTFHVVSKVVYEFSRRESVP 165
            SALQNGLRQRSEAASAREVLELLLDTFHVVSKV        S P
Sbjct: 1347 SALQNGLRQRSEAASAREVLELLLDTFHVVSKVEKLIKELPSAP 1390

[Close]
BLAST of Clc11G06020 vs. NCBI nr
Match: XP_022924123.1 (conserved oligomeric Golgi complex subunit 2 [Cucurbita moschata])

HSP 1 Score: 296.2 bits (757), Expect = 2.2e-76
Identity = 153/164 (93.29%), Postives = 153/164 (93.29%), Query Frame = 0 

Query: 1   MADLIPPPHRSANDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLH 60
           MADLIPPPHRS NDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLH
Sbjct: 1   MADLIPPPHRSTNDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLH 60

Query: 61  SHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRAPLVELREKIEQFRGSVEFSL 120
           SHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRAPLVELREKIEQFR SVEFSL
Sbjct: 61  SHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRAPLVELREKIEQFRASVEFSL 120

Query: 121 SALQNGLRQRSEAASAREVLELLLDTFHVVSKVVYEFSRRESVP 165
           SALQNGLRQRSEAASAREVLELLLDTFHVVSKV        S P
Sbjct: 121 SALQNGLRQRSEAASAREVLELLLDTFHVVSKVEKLIKELPSAP 164

[Close]
BLAST of Clc11G06020 vs. ExPASy Swiss-Prot
Match: F4JRR1 (Conserved oligomeric Golgi complex subunit 2 OS=Arabidopsis thaliana OX=3702 GN=COG2 PE=1 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 4.5e-64
Identity = 128/159 (80.50%), Postives = 142/159 (89.31%), Query Frame = 0 

Query: 1   MADLI---PPPH---RSANDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDT 60
           M+DL+   P P    RSA DFFSDP DSHPLWFKP LFLSPNFDSESYISELRTFVPFDT
Sbjct: 1   MSDLVATSPSPSSAPRSATDFFSDPYDSHPLWFKPSLFLSPNFDSESYISELRTFVPFDT 60

Query: 61  LRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRAPLVELREKIEQFRG 120
           LRS+L SHL++LNREL+DLINRDY DFVNLSTKLVD++AAVVRMRAPL+ELREKI  FRG
Sbjct: 61  LRSELRSHLASLNRELVDLINRDYADFVNLSTKLVDIDAAVVRMRAPLLELREKITGFRG 120

Query: 121 SVEFSLSALQNGLRQRSEAASAREVLELLLDTFHVVSKV 154
           SVE +L AL+NGL+QRS+AA+AREVLELLLDTFHVVSKV
Sbjct: 121 SVEAALFALRNGLQQRSDAAAAREVLELLLDTFHVVSKV 159

[Close]
BLAST of Clc11G06020 vs. ExPASy Swiss-Prot
Match: Q14746 (Conserved oligomeric Golgi complex subunit 2 OS=Homo sapiens OX=9606 GN=COG2 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.7e-13
Identity = 41/135 (30.37%), Postives = 71/135 (52.59%), Query Frame = 0 

Query: 19  PLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDY 78
           P     L F  D F+  +FD + ++S+ R  V  + LR  L  +   L   +++LIN+DY
Sbjct: 9   PKGPDTLCFDKDEFMKEDFDVDHFVSDCRKRVQLEELRDDLELYYKLLKTAMVELINKDY 68

Query: 79  TDFVNLSTKLVDVEAAVVRMRAPLVELREKIEQFRGSVEFSLSALQNGLRQRSEAASARE 138
            DFVNLST LV ++ A+ ++  PL +LRE++   R SV   + A+   + ++ +    + 
Sbjct: 69  ADFVNLSTNLVGMDKALNQLSVPLGQLREEVLSLRSSVSEGIRAVDERMSKQEDIRKKKM 128

Query: 139 VLELLLDTFHVVSKV 154
            +  L+     V K+
Sbjct: 129 CVLRLIQVIRSVEKI 143

[Close]
BLAST of Clc11G06020 vs. ExPASy Swiss-Prot
Match: Q921L5 (Conserved oligomeric Golgi complex subunit 2 OS=Mus musculus OX=10090 GN=Cog2 PE=1 SV=2)

HSP 1 Score: 75.9 bits (185), Expect = 6.1e-13
Identity = 41/135 (30.37%), Postives = 71/135 (52.59%), Query Frame = 0 

Query: 19  PLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDY 78
           P     L F  D F+  +FD + ++S+ R  V  + LR  L  +   L   +++LIN+DY
Sbjct: 9   PTGPDTLCFDKDEFMKEDFDVDHFVSDCRKRVQLEELRDDLELYYKLLKTAMVELINKDY 68

Query: 79  TDFVNLSTKLVDVEAAVVRMRAPLVELREKIEQFRGSVEFSLSALQNGLRQRSEAASARE 138
            DFVNLST LV ++ A+ ++  PL +LRE++   R SV   + A+   + ++ +    + 
Sbjct: 69  ADFVNLSTNLVGMDRALNQLSVPLGQLREEVLSLRSSVSEGILAVDERMSKQEDIRKKKM 128

Query: 139 VLELLLDTFHVVSKV 154
            +  L+     V K+
Sbjct: 129 SVLRLIQVIRSVEKI 143

[Close]
BLAST of Clc11G06020 vs. ExPASy Swiss-Prot
Match: Q9VF78 (Conserved oligomeric Golgi complex subunit 2 OS=Drosophila melanogaster OX=7227 GN=Cog2 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.6e-11
Identity = 40/147 (27.21%), Postives = 73/147 (49.66%), Query Frame = 0 

Query: 7   PPHRSANDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSAL 66
           P  +SA+        +  L F  + F+  NF  + ++ + R     + LR  L  +L  L
Sbjct: 4   PVKKSAHLTAGSTSTAEKLCFDKNEFMKANFSVDEFLHKNRNAPSLEQLRDNLGLYLKGL 63

Query: 67  NRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRAPLVELREKIEQFRGSVEFSLSALQNG 126
              +IDLIN DY DFVNLS  LV ++  +  ++ PL + R  IE   G ++ +++ L+  
Sbjct: 64  RAAMIDLINEDYADFVNLSANLVGLDQNIKTIQQPLEQFRSDIESIHGLIDENVTELRAQ 123

Query: 127 LRQRSEAASAREVLELLLDTFHVVSKV 154
           L ++ +    +  L+ L   +  ++K+
Sbjct: 124 LEEKRQLREFKRGLQSLKKVYETINKL 150

[Close]
BLAST of Clc11G06020 vs. ExPASy Swiss-Prot
Match: Q54UC2 (Conserved oligomeric Golgi complex subunit 2 OS=Dictyostelium discoideum OX=44689 GN=cog2 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.7e-08
Identity = 32/136 (23.53%), Postives = 69/136 (50.74%), Query Frame = 0 

Query: 24  PLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVN 83
           PL F  D+F S  F+ + +IS+ R  V  ++++  L  +   L+ ELI+LIN++Y  F +
Sbjct: 52  PLCFSKDVFTSNTFEVDQFISDCRKRVNLESVQKDLREYSKHLDSELIELINKEYQSFFS 111

Query: 84  LSTKLVDVEAAVVRMRAPLVELREKIEQFRGSVEFSLSALQNGLRQRSEAASAREVLELL 143
           LST LV  +  +         ++ +I+ F   +      +++ L ++      +++L+L 
Sbjct: 112 LSTSLVGFDTILNEFSISQSSIKSEIKSFNNEIVKVRGLVEDKLNEKKSIEQKKKLLQLY 171

Query: 144 LDTFHVVSKVVYEFSR 160
           +     ++ + + F +
Sbjct: 172 ISISETLNNMNHLFDQ 187

[Close]
BLAST of Clc11G06020 vs. ExPASy TrEMBL
Match: A0A0A0KBT8 (Component of oligomeric Golgi complex 2 OS=Cucumis sativus OX=3659 GN=Csa_6G014670 PE=3 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 3.7e-77
Identity = 154/164 (93.90%), Postives = 154/164 (93.90%), Query Frame = 0 

Query: 1   MADLIPPPHRSANDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLH 60
           MADLIPPPHRSAND FSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLH
Sbjct: 1   MADLIPPPHRSANDLFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLH 60

Query: 61  SHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRAPLVELREKIEQFRGSVEFSL 120
           SHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRAPLVELREKIEQFRGSVEFSL
Sbjct: 61  SHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRAPLVELREKIEQFRGSVEFSL 120

Query: 121 SALQNGLRQRSEAASAREVLELLLDTFHVVSKVVYEFSRRESVP 165
           SALQNGLRQRSEAASAREVLELLLDTFHVVSKV        S P
Sbjct: 121 SALQNGLRQRSEAASAREVLELLLDTFHVVSKVEKLIKELPSAP 164

[Close]
BLAST of Clc11G06020 vs. ExPASy TrEMBL
Match: A0A6J1EBH3 (Component of oligomeric Golgi complex 2 OS=Cucurbita moschata OX=3662 GN=LOC111431651 PE=3 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 1.1e-76
Identity = 153/164 (93.29%), Postives = 153/164 (93.29%), Query Frame = 0 

Query: 1   MADLIPPPHRSANDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLH 60
           MADLIPPPHRS NDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLH
Sbjct: 1   MADLIPPPHRSTNDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLH 60

Query: 61  SHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRAPLVELREKIEQFRGSVEFSL 120
           SHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRAPLVELREKIEQFR SVEFSL
Sbjct: 61  SHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRAPLVELREKIEQFRASVEFSL 120

Query: 121 SALQNGLRQRSEAASAREVLELLLDTFHVVSKVVYEFSRRESVP 165
           SALQNGLRQRSEAASAREVLELLLDTFHVVSKV        S P
Sbjct: 121 SALQNGLRQRSEAASAREVLELLLDTFHVVSKVEKLIKELPSAP 164

[Close]
BLAST of Clc11G06020 vs. ExPASy TrEMBL
Match: A0A6J1KHC6 (Component of oligomeric Golgi complex 2 OS=Cucurbita maxima OX=3661 GN=LOC111495261 PE=3 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 2.4e-76
Identity = 152/164 (92.68%), Postives = 153/164 (93.29%), Query Frame = 0 

Query: 1   MADLIPPPHRSANDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLH 60
           MADLIPPPHRS NDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLH
Sbjct: 1   MADLIPPPHRSTNDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLH 60

Query: 61  SHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRAPLVELREKIEQFRGSVEFSL 120
           SHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRAPLVELREKIEQFR SVEFSL
Sbjct: 61  SHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRAPLVELREKIEQFRASVEFSL 120

Query: 121 SALQNGLRQRSEAASAREVLELLLDTFHVVSKVVYEFSRRESVP 165
           S+LQNGLRQRSEAASAREVLELLLDTFHVVSKV        S P
Sbjct: 121 SSLQNGLRQRSEAASAREVLELLLDTFHVVSKVEKLIKELPSAP 164

[Close]
BLAST of Clc11G06020 vs. ExPASy TrEMBL
Match: A0A5D3BRV0 (Component of oligomeric Golgi complex 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G001100 PE=3 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 6.9e-76
Identity = 152/164 (92.68%), Postives = 153/164 (93.29%), Query Frame = 0 

Query: 1   MADLIPPPHRSANDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLH 60
           MADLIPPPHRSAND FSDPLDSHPLWFKP+LFLSPNFDSESYISELRTFVPFDTLRSQLH
Sbjct: 1   MADLIPPPHRSANDLFSDPLDSHPLWFKPNLFLSPNFDSESYISELRTFVPFDTLRSQLH 60

Query: 61  SHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRAPLVELREKIEQFRGSVEFSL 120
           SHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRAPLVELREKIEQFR SVEFSL
Sbjct: 61  SHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRAPLVELREKIEQFRASVEFSL 120

Query: 121 SALQNGLRQRSEAASAREVLELLLDTFHVVSKVVYEFSRRESVP 165
           SALQNGLRQRSEAASAREVLELLLDTFHVVSKV        S P
Sbjct: 121 SALQNGLRQRSEAASAREVLELLLDTFHVVSKVEKLIKELPSAP 164

[Close]
BLAST of Clc11G06020 vs. ExPASy TrEMBL
Match: A0A5A7U0M8 (Component of oligomeric Golgi complex 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1059G00300 PE=3 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 6.9e-76
Identity = 152/164 (92.68%), Postives = 153/164 (93.29%), Query Frame = 0 

Query: 1   MADLIPPPHRSANDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLH 60
           MADLIPPPHRSAND FSDPLDSHPLWFKP+LFLSPNFDSESYISELRTFVPFDTLRSQLH
Sbjct: 1   MADLIPPPHRSANDLFSDPLDSHPLWFKPNLFLSPNFDSESYISELRTFVPFDTLRSQLH 60

Query: 61  SHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRAPLVELREKIEQFRGSVEFSL 120
           SHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRAPLVELREKIEQFR SVEFSL
Sbjct: 61  SHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRAPLVELREKIEQFRASVEFSL 120

Query: 121 SALQNGLRQRSEAASAREVLELLLDTFHVVSKVVYEFSRRESVP 165
           SALQNGLRQRSEAASAREVLELLLDTFHVVSKV        S P
Sbjct: 121 SALQNGLRQRSEAASAREVLELLLDTFHVVSKVEKLIKELPSAP 164

[Close]
BLAST of Clc11G06020 vs. TAIR 10
Match: AT4G24840.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein transport, Golgi organization; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: COG complex component, COG2 (InterPro:IPR009316); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 245.7 bits (626), Expect = 3.2e-65
Identity = 128/159 (80.50%), Postives = 142/159 (89.31%), Query Frame = 0 

Query: 1   MADLI---PPPH---RSANDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDT 60
           M+DL+   P P    RSA DFFSDP DSHPLWFKP LFLSPNFDSESYISELRTFVPFDT
Sbjct: 1   MSDLVATSPSPSSAPRSATDFFSDPYDSHPLWFKPSLFLSPNFDSESYISELRTFVPFDT 60

Query: 61  LRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRAPLVELREKIEQFRG 120
           LRS+L SHL++LNREL+DLINRDY DFVNLSTKLVD++AAVVRMRAPL+ELREKI  FRG
Sbjct: 61  LRSELRSHLASLNRELVDLINRDYADFVNLSTKLVDIDAAVVRMRAPLLELREKITGFRG 120

Query: 121 SVEFSLSALQNGLRQRSEAASAREVLELLLDTFHVVSKV 154
           SVE +L AL+NGL+QRS+AA+AREVLELLLDTFHVVSKV
Sbjct: 121 SVEAALFALRNGLQQRSDAAAAREVLELLLDTFHVVSKV 159

The following BLAST results are available for this feature:
BLAST of Clc11G06020 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038884882.14.4e-7793.29LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 2 [Benincasa his... [more]
XP_031743585.17.6e-7793.90conserved oligomeric Golgi complex subunit 2 [Cucumis sativus] >KGN45847.1 hypot... [more]
KAG7019738.12.2e-7693.29Conserved oligomeric Golgi complex subunit 2 [Cucurbita argyrosperma subsp. argy... [more]
KAG6584147.12.2e-7693.29Conserved oligomeric Golgi complex subunit 2, partial [Cucurbita argyrosperma su... [more]
XP_022924123.12.2e-7693.29conserved oligomeric Golgi complex subunit 2 [Cucurbita moschata][more]
BLAST of Clc11G06020 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F4JRR14.5e-6480.50Conserved oligomeric Golgi complex subunit 2 OS=Arabidopsis thaliana OX=3702 GN=... [more]
Q147464.7e-1330.37Conserved oligomeric Golgi complex subunit 2 OS=Homo sapiens OX=9606 GN=COG2 PE=... [more]
Q921L56.1e-1330.37Conserved oligomeric Golgi complex subunit 2 OS=Mus musculus OX=10090 GN=Cog2 PE... [more]
Q9VF782.6e-1127.21Conserved oligomeric Golgi complex subunit 2 OS=Drosophila melanogaster OX=7227 ... [more]
Q54UC22.7e-0823.53Conserved oligomeric Golgi complex subunit 2 OS=Dictyostelium discoideum OX=4468... [more]
BLAST of Clc11G06020 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBT83.7e-7793.90Component of oligomeric Golgi complex 2 OS=Cucumis sativus OX=3659 GN=Csa_6G0146... [more]
A0A6J1EBH31.1e-7693.29Component of oligomeric Golgi complex 2 OS=Cucurbita moschata OX=3662 GN=LOC1114... [more]
A0A6J1KHC62.4e-7692.68Component of oligomeric Golgi complex 2 OS=Cucurbita maxima OX=3661 GN=LOC111495... [more]
A0A5D3BRV06.9e-7692.68Component of oligomeric Golgi complex 2 OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7U0M86.9e-7692.68Component of oligomeric Golgi complex 2 OS=Cucumis melo var. makuwa OX=1194695 G... [more]
BLAST of Clc11G06020 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G24840.13.2e-6580.50FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein transport, Golgi ... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024602Conserved oligomeric Golgi complex, subunit 2, N-terminalPFAMPF06148COG2coord: 25..153
e-value: 6.2E-37
score: 126.7
NoneNo IPR availablePANTHERPTHR12961:SF1BNAA01G14200D PROTEINcoord: 9..154
IPR009316COG complex component, COG2PANTHERPTHR12961CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 2coord: 9..154

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc11G06020.2Clc11G06020.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007030 Golgi organization
biological_process GO:0015031 protein transport
biological_process GO:0060178 regulation of exocyst localization
cellular_component GO:0031410 cytoplasmic vesicle
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0016020 membrane
molecular_function GO:0042803 protein homodimerization activity