Clc11G05890 (gene) Watermelon (cordophanus) v2

Overview
NameClc11G05890
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionHEAT repeat-containing protein 5B isoform X2
LocationClcChr11: 5691105 .. 5693756 (+)
RNA-Seq ExpressionClc11G05890
SyntenyClc11G05890
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGAAGGACTGGGAGAAGGCATATGGGCAGCCTGAATATGGTTCCCAATGCTAAAGGACTTAAAGAAGGCATATGAGCAGCTTGAATTATAATTCCTATGTGCACATTGAGGGAGATTTGTTGTTGTTGTGTTTAAGATTATCCAAATTATTTGACGTTGGATACGATGAGATTATTCCATCCCAACTAAGGTTGTTTTGGACGTTGAGCAGTGTTGAGTTTACTCCACTTCAACTAAGAAAAATTCTTTCACATATATTTATAAGCTTTCAATGCTTTATTATTTAAATGACAAACATGATTTCATTGAGCTTTTAAGCCAAGAAGGGTTTTCAAAACTTGTTACTCACTGGGCTATCTAGCTCATATTTTCAAATGTTTTCCTACTATCCAGGTAGCGAGTGGAACCAGGGTGCTTAGCCTACTCGTCAAACTCGTCTGGATCTGCTGTTTAGTTTTGGACTTTGTAAATATTTATACTTAGACCTAGCATTGTACATGTTGAGGTCTAAGGAGCGGAAGTTGTGTAAAAACTCTGTTGTTATCTTAATAAAGGTTTAATTTTGAGATTATTATTTATGGCTTGGATGTGAATTATAATTATCTTATAAAGTGCTTGGTAAGAATTTGAGGAGAGTTAAGTTGACTATCCTTAAATTCTTACCAAACACTTTGTTCTTTAAGACTTTATATTCTTTAAAAAATGAGAGTTTTCTTGTTTACTCTTTACTAATGTAAACATAAAGTGAAATTACCAAAACAAAACTCTCACACAAGCAAAATGACTAATATCGCTCTTTGCTCTCTCGCTCCTCTCCTTTGTTCCCATTCTTTCTCTCATTGATTGTTTTCCTTCTCTCACATATCGCTCTCCTCTCTCTCTCTTTGTCTCACTTTCCTGATTTGGGGGCTCATTGGTAGCATGCGCAAGTTGGTGCTCGCTTGATTTGGTATGGTCACTCGCCGAAGAAGAGGAAGAAGAAAAACAGAAGGAAAAAAGACCTTCAGAGAAGAAGAGGAAGAAGAAGAGAAAAAAAAAAAAGAAAACAACCCTAGAAGAAGAAAAGAAGGAGGAAAAAACCCCTTACCCAAACCTACGATGAAGAAGAGGAAGAAGTCAAAAGAAACGAAAGAAGTGCAAATCTGTAACTTTACTCATCCATGATGTCAGCAGCAAAGTCAATTACCAATATTTTTAAAAAAGTGGTACATTTTTCATTTGGAGCCTACAAAATAGATTGCATGTGCATTTCTCACCTACTTTACTAAGGAAGGGAGGATACAATTGTCGAAAATAGGGCATTTTTACTTGGGCCATTTTAACAAATTTGATTTATGAAAAGAGCATTATGCCGAATTACCTAAATAAAAAAAAAAAAGAAGAAAGAAAAAAAAGGTGAAAAGGAGCGATCGGCAAACGATCGACTAATCAACACGGACTCTGATTCACCGGCTTCAATCGACATAGAATTGCCACTCTGCACACTGGAGCAGCTCAATTGTCGATTCCTGCTCCCACTCGACAATGGTGAAGACTTACGTGAGAGAGAATGTGCCTCTCTCTCGTTTTGGTGTCTTGGTAGCTCAGCTAGAATCCATAGTCGCCTCCGCTGCTCAGCAGCCTCCGGAGCCCCTTCTCTGTTTCGATCTTCTATCCGATCTCATTTCCGCCATCGATGAAGAGCCAAAGGTTCACTCTTTTAATTTCGCTGCATTTTCATGTTTAGCTAATTAGTATCCATCTTGTCGTCTTTCGGAAATGTTCTATTGGTTTTAACTGCCAACTTTTACATTAACAAGATACGATATTTAATTCTGCGATATTATGCGGATCTCGATGAATTTGATATCGGATATAGAATTATTATGCTCAGTCGGTTTTATTGTTATATGTTTCTGCTCTTGTCATCATTGTTTCCGTCTTGCATTGTCCACGGGTGGGAATATCTGTCTTCATTGGGTATGTGGCTATGAAGTTTTAATTTGCCTCCGTGCTAATGAAGGATATAGAGCTCGCATCATGTAATTGTAATTCAGCAGTGTACGACTGGTGAGAATAAAGGAGACTTGACATAAAAGCACAGAGCACGAAGACCTCCATAGATATTTAAAGAAGAAAATACAGTCGCATGTCTTGCTTAATATGGATAGAAAATAGCAGAAAAGGGTGAAAAGATAAAAGATACAAGGAGTAAAGTGAGCACGAGCTTGACTTTTAGACTGTGGAATCGGGAAGAAGGAAGCGATTTAGTCATAATATCAGCTAGCTGATGAACAAATGGAACAAATTTGACACAAAACTGCTTGTGACCTATCTTTTCACGAACATAATTGTGGTCAATTTCAACGTGTTTGGTTCAACTATGGATCACAGGGTTTGCAATCAAATAATAGCACTAAAATTATCACAAAGCAAAAGTGGGGAGGAAGATTATGCCTGCCAATCTCAAACATAATAAACTGAACCCACATTAATTCAGTGGTGACATTGGACATTCTACGATATTCCAACTTTGTGCTTGAATGAGACACCACATTTTGTTTCGAAGAACACCATGAAATCAAGATAGAACCGAGAACATGCAGATGTGTAGTCGCTGGAACATGGAGGAAATGACACAGTTCATTAATAGTGAAACAAATCTCTAG

mRNA sequence

ATGCTGAAGGACTGGGAGAAGGCATATGGGCAGCCTGAATATGGTGAAAAGGAGCGATCGGCAAACGATCGACTAATCAACACGGACTCTGATTCACCGGCTTCAATCGACATAGAATTGCCACTCTGCACACTGGAGCAGCTCAATTGTCGATTCCTGCTCCCACTCGACAATGGTGAAGACTTACCTCAGCTAGAATCCATAGTCGCCTCCGCTGCTCAGCAGCCTCCGGAGCCCCTTCTCTGTTTCGATCTTCTATCCGATCTCATTTCCGCCATCGATGAAGAGCCAAAGGATATAGAGCTCGCATCATGTAATTGTAATTCAGCAGTGTACGACTGTCGCTGGAACATGGAGGAAATGACACAGTTCATTAATAGTGAAACAAATCTCTAG

Coding sequence (CDS)

ATGCTGAAGGACTGGGAGAAGGCATATGGGCAGCCTGAATATGGTGAAAAGGAGCGATCGGCAAACGATCGACTAATCAACACGGACTCTGATTCACCGGCTTCAATCGACATAGAATTGCCACTCTGCACACTGGAGCAGCTCAATTGTCGATTCCTGCTCCCACTCGACAATGGTGAAGACTTACCTCAGCTAGAATCCATAGTCGCCTCCGCTGCTCAGCAGCCTCCGGAGCCCCTTCTCTGTTTCGATCTTCTATCCGATCTCATTTCCGCCATCGATGAAGAGCCAAAGGATATAGAGCTCGCATCATGTAATTGTAATTCAGCAGTGTACGACTGTCGCTGGAACATGGAGGAAATGACACAGTTCATTAATAGTGAAACAAATCTCTAG

Protein sequence

MLKDWEKAYGQPEYGEKERSANDRLINTDSDSPASIDIELPLCTLEQLNCRFLLPLDNGEDLPQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKDIELASCNCNSAVYDCRWNMEEMTQFINSETNL
Homology
[Close]
BLAST of Clc11G05890 vs. NCBI nr
Match: XP_018815433.1 (protein SWEETIE isoform X1 [Juglans regia] >KAF5457429.1 hypothetical protein F2P56_021531 [Juglans regia])

HSP 1 Score: 75.9 bits (185), Expect = 2.9e-10
Identity = 43/64 (67.19%), Postives = 48/64 (75.00%), Query Frame = 0 

Query: 51  RFLLPLDN-GEDLPQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKD-IELASCNCN 110
           R  +PL   G  + QLESIV+SAAQQPPEPLLCFDLLSDLISAIDEEPK+ I L    C 
Sbjct: 7   RETMPLSRFGVLVAQLESIVSSAAQQPPEPLLCFDLLSDLISAIDEEPKESILLCQRKCE 66

Query: 111 SAVY 113
            A+Y
Sbjct: 67  DALY 70

[Close]
BLAST of Clc11G05890 vs. NCBI nr
Match: XP_018815434.1 (protein SWEETIE isoform X2 [Juglans regia] >KAF5457430.1 hypothetical protein F2P56_021531 [Juglans regia])

HSP 1 Score: 75.9 bits (185), Expect = 2.9e-10
Identity = 43/64 (67.19%), Postives = 48/64 (75.00%), Query Frame = 0 

Query: 51  RFLLPLDN-GEDLPQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKD-IELASCNCN 110
           R  +PL   G  + QLESIV+SAAQQPPEPLLCFDLLSDLISAIDEEPK+ I L    C 
Sbjct: 7   RETMPLSRFGVLVAQLESIVSSAAQQPPEPLLCFDLLSDLISAIDEEPKESILLCQRKCE 66

Query: 111 SAVY 113
            A+Y
Sbjct: 67  DALY 70

[Close]
BLAST of Clc11G05890 vs. NCBI nr
Match: XP_041007570.1 (protein SWEETIE isoform X2 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 75.5 bits (184), Expect = 3.9e-10
Identity = 43/61 (70.49%), Postives = 47/61 (77.05%), Query Frame = 0 

Query: 54  LPLDN-GEDLPQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKD-IELASCNCNSAV 113
           +PL   G  + QLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPK+ I L    C  A+
Sbjct: 10  MPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKESILLWQRKCEDAL 69

[Close]
BLAST of Clc11G05890 vs. NCBI nr
Match: XP_041007569.1 (protein SWEETIE isoform X1 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 75.5 bits (184), Expect = 3.9e-10
Identity = 43/61 (70.49%), Postives = 47/61 (77.05%), Query Frame = 0 

Query: 54  LPLDN-GEDLPQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKD-IELASCNCNSAV 113
           +PL   G  + QLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPK+ I L    C  A+
Sbjct: 10  MPLSRFGVLVAQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKESILLWQRKCEDAL 69

[Close]
BLAST of Clc11G05890 vs. NCBI nr
Match: XP_022939608.1 (protein SWEETIE isoform X1 [Cucurbita moschata])

HSP 1 Score: 75.1 bits (183), Expect = 5.0e-10
Identity = 40/50 (80.00%), Postives = 42/50 (84.00%), Query Frame = 0 

Query: 64  QLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKD-IELASCNCNSAVY 113
           QLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPK+ I L    C  A+Y
Sbjct: 21  QLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKESILLWQRKCEEALY 70

[Close]
BLAST of Clc11G05890 vs. ExPASy Swiss-Prot
Match: F4HRS2 (Protein SWEETIE OS=Arabidopsis thaliana OX=3702 GN=SWEETIE PE=1 SV=2)

HSP 1 Score: 64.7 bits (156), Expect = 8.9e-10
Identity = 32/50 (64.00%), Postives = 41/50 (82.00%), Query Frame = 0 

Query: 64  QLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKD-IELASCNCNSAVY 113
           QLESIVASA+Q+ P+PLLCF++LSDLISAIDEEPK+ + +    C  A+Y
Sbjct: 21  QLESIVASASQKNPDPLLCFEILSDLISAIDEEPKESLLVTQRKCEDALY 70

[Close]
BLAST of Clc11G05890 vs. ExPASy TrEMBL
Match: A0A2I4E7Q6 (protein SWEETIE isoform X1 OS=Juglans regia OX=51240 GN=LOC108987048 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.4e-10
Identity = 43/64 (67.19%), Postives = 48/64 (75.00%), Query Frame = 0 

Query: 51  RFLLPLDN-GEDLPQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKD-IELASCNCN 110
           R  +PL   G  + QLESIV+SAAQQPPEPLLCFDLLSDLISAIDEEPK+ I L    C 
Sbjct: 7   RETMPLSRFGVLVAQLESIVSSAAQQPPEPLLCFDLLSDLISAIDEEPKESILLCQRKCE 66

Query: 111 SAVY 113
            A+Y
Sbjct: 67  DALY 70

[Close]
BLAST of Clc11G05890 vs. ExPASy TrEMBL
Match: A0A2I4E7R4 (protein SWEETIE isoform X2 OS=Juglans regia OX=51240 GN=LOC108987048 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.4e-10
Identity = 43/64 (67.19%), Postives = 48/64 (75.00%), Query Frame = 0 

Query: 51  RFLLPLDN-GEDLPQLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKD-IELASCNCN 110
           R  +PL   G  + QLESIV+SAAQQPPEPLLCFDLLSDLISAIDEEPK+ I L    C 
Sbjct: 7   RETMPLSRFGVLVAQLESIVSSAAQQPPEPLLCFDLLSDLISAIDEEPKESILLCQRKCE 66

Query: 111 SAVY 113
            A+Y
Sbjct: 67  DALY 70

[Close]
BLAST of Clc11G05890 vs. ExPASy TrEMBL
Match: A0A6J1K049 (protein SWEETIE isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111488992 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.4e-10
Identity = 40/50 (80.00%), Postives = 42/50 (84.00%), Query Frame = 0 

Query: 64  QLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKD-IELASCNCNSAVY 113
           QLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPK+ I L    C  A+Y
Sbjct: 21  QLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKESILLWQRKCEEALY 70

[Close]
BLAST of Clc11G05890 vs. ExPASy TrEMBL
Match: A0A6J1JQS3 (protein SWEETIE isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111488992 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.4e-10
Identity = 40/50 (80.00%), Postives = 42/50 (84.00%), Query Frame = 0 

Query: 64  QLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKD-IELASCNCNSAVY 113
           QLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPK+ I L    C  A+Y
Sbjct: 21  QLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKESILLWQRKCEEALY 70

[Close]
BLAST of Clc11G05890 vs. ExPASy TrEMBL
Match: A0A5A7T8T6 (HEAT repeat-containing protein 5B isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G001750 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.4e-10
Identity = 40/50 (80.00%), Postives = 42/50 (84.00%), Query Frame = 0 

Query: 64  QLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKD-IELASCNCNSAVY 113
           QLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPK+ I L    C  A+Y
Sbjct: 21  QLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKESILLWQRKCEEALY 70

[Close]
BLAST of Clc11G05890 vs. TAIR 10
Match: AT1G67140.1 (HEAT repeat-containing protein )

HSP 1 Score: 64.7 bits (156), Expect = 6.3e-11
Identity = 32/50 (64.00%), Postives = 41/50 (82.00%), Query Frame = 0 

Query: 64  QLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKD-IELASCNCNSAVY 113
           QLESIVASA+Q+ P+PLLCF++LSDLISAIDEEPK+ + +    C  A+Y
Sbjct: 21  QLESIVASASQKNPDPLLCFEILSDLISAIDEEPKESLLVTQRKCEDALY 70

[Close]
BLAST of Clc11G05890 vs. TAIR 10
Match: AT1G67140.3 (HEAT repeat-containing protein )

HSP 1 Score: 64.7 bits (156), Expect = 6.3e-11
Identity = 32/50 (64.00%), Postives = 41/50 (82.00%), Query Frame = 0 

Query: 64  QLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKD-IELASCNCNSAVY 113
           QLESIVASA+Q+ P+PLLCF++LSDLISAIDEEPK+ + +    C  A+Y
Sbjct: 21  QLESIVASASQKNPDPLLCFEILSDLISAIDEEPKESLLVTQRKCEDALY 70

[Close]
BLAST of Clc11G05890 vs. TAIR 10
Match: AT1G67140.2 (HEAT repeat-containing protein )

HSP 1 Score: 64.7 bits (156), Expect = 6.3e-11
Identity = 32/50 (64.00%), Postives = 41/50 (82.00%), Query Frame = 0 

Query: 64  QLESIVASAAQQPPEPLLCFDLLSDLISAIDEEPKD-IELASCNCNSAVY 113
           QLESIVASA+Q+ P+PLLCF++LSDLISAIDEEPK+ + +    C  A+Y
Sbjct: 21  QLESIVASASQKNPDPLLCFEILSDLISAIDEEPKESLLVTQRKCEDALY 70

The following BLAST results are available for this feature:
BLAST of Clc11G05890 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_018815433.12.9e-1067.19protein SWEETIE isoform X1 [Juglans regia] >KAF5457429.1 hypothetical protein F2... [more]
XP_018815434.12.9e-1067.19protein SWEETIE isoform X2 [Juglans regia] >KAF5457430.1 hypothetical protein F2... [more]
XP_041007570.13.9e-1070.49protein SWEETIE isoform X2 [Juglans microcarpa x Juglans regia][more]
XP_041007569.13.9e-1070.49protein SWEETIE isoform X1 [Juglans microcarpa x Juglans regia][more]
XP_022939608.15.0e-1080.00protein SWEETIE isoform X1 [Cucurbita moschata][more]
BLAST of Clc11G05890 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F4HRS28.9e-1064.00Protein SWEETIE OS=Arabidopsis thaliana OX=3702 GN=SWEETIE PE=1 SV=2[more]
BLAST of Clc11G05890 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2I4E7Q61.4e-1067.19protein SWEETIE isoform X1 OS=Juglans regia OX=51240 GN=LOC108987048 PE=4 SV=1[more]
A0A2I4E7R41.4e-1067.19protein SWEETIE isoform X2 OS=Juglans regia OX=51240 GN=LOC108987048 PE=4 SV=1[more]
A0A6J1K0492.4e-1080.00protein SWEETIE isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111488992 PE=4 SV=1[more]
A0A6J1JQS32.4e-1080.00protein SWEETIE isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111488992 PE=4 SV=1[more]
A0A5A7T8T62.4e-1080.00HEAT repeat-containing protein 5B isoform X2 OS=Cucumis melo var. makuwa OX=1194... [more]
BLAST of Clc11G05890 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G67140.16.3e-1164.00HEAT repeat-containing protein [more]
AT1G67140.36.3e-1164.00HEAT repeat-containing protein [more]
AT1G67140.26.3e-1164.00HEAT repeat-containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc11G05890.2Clc11G05890.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process