Clc11G05512 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G05512
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	stress-induced protein KIN2-like
Location	ClcChr11: 5338601 .. 5338983 (-)
RNA-Seq Expression	Clc11G05512
Synteny	Clc11G05512

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAACTCCCAAAAGATGAGCTACCATGTAGGAGAAGCCAAGGGTCAAGCGCAGGTTTACATCACTATAAATTTAATAACATCATTACCATTTAATAATTTCATTCAATAAGTTTGTTTTATATCATTTTTTAATTGTTTGTCAATTAGTCGTACATTTTTATTGTCACTTCATATTACTTTTTGGTTCTTGTTGGAAAATATCTAATTTGGTGTGTTTTGTTAATTTGTGGTGTTATATAGGAGAAAGTGAGCAATATGATGGACAAGGCAAGCGATGTAGCTCAATCAGCTAAGGAATCAGTGCAGGAAGCAGGACAACAAATGAAGGCCAAAGCACAAGGAGCTGCTGATGCTGTCAAAGATGCAGTTAATAAATGA

mRNA sequence

ATGGATAACTCCCAAAAGATGAGCTACCATGTAGGAGAAGCCAAGGGTCAAGCGCAGGTTTACATCACTATAAATTTAGAGAAAGTGAGCAATATGATGGACAAGGCAAGCGATGTAGCTCAATCAGCTAAGGAATCAGTGCAGGAAGCAGGACAACAAATGAAGGCCAAAGCACAAGGAGCTGCTGATGCTGTCAAAGATGCAGTTAATAAATGA

Coding sequence (CDS)

ATGGATAACTCCCAAAAGATGAGCTACCATGTAGGAGAAGCCAAGGGTCAAGCGCAGGTTTACATCACTATAAATTTAGAGAAAGTGAGCAATATGATGGACAAGGCAAGCGATGTAGCTCAATCAGCTAAGGAATCAGTGCAGGAAGCAGGACAACAAATGAAGGCCAAAGCACAAGGAGCTGCTGATGCTGTCAAAGATGCAGTTAATAAATGA

Protein sequence

MDNSQKMSYHVGEAKGQAQVYITINLEKVSNMMDKASDVAQSAKESVQEAGQQMKAKAQGAADAVKDAVNK

Homology

[Close]

BLAST of Clc11G05512 vs. NCBI nr
Match: XP_038891080.1 (late embryogenesis abundant protein 2-like [Benincasa hispida])

HSP 1 Score: 102.4 bits (254), Expect = 1.6e-18
Identity = 57/71 (80.28%), Postives = 60/71 (84.51%), Query Frame = 0


Query: 1  MDNSQKMSYHVGEAKGQAQVYITINLEKVSNMMDKASDVAQSAKESVQEAGQQMKAKAQG 60
          MDNSQKMSYH GEAKGQ Q       EKVSNMMDKASD AQSAKES+QEAGQQ+KAKAQG
Sbjct: 1  MDNSQKMSYHAGEAKGQTQ-------EKVSNMMDKASDAAQSAKESIQEAGQQVKAKAQG 60

Query: 61 AADAVKDAVNK 72
          A DAVKDA+NK
Sbjct: 61 ATDAVKDAINK 64

[Close]

BLAST of Clc11G05512 vs. NCBI nr
Match: XP_038891124.1 (late embryogenesis abundant protein 7-like [Benincasa hispida])

HSP 1 Score: 101.7 bits (252), Expect = 2.7e-18
Identity = 57/71 (80.28%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 1  MDNSQKMSYHVGEAKGQAQVYITINLEKVSNMMDKASDVAQSAKESVQEAGQQMKAKAQG 60
          MDNSQKMSYH GEAKGQAQ       EK+SNMMDKA D AQSAKESVQE GQQMKAK QG
Sbjct: 1  MDNSQKMSYHAGEAKGQAQ-------EKLSNMMDKAGDAAQSAKESVQEVGQQMKAKVQG 60

Query: 61 AADAVKDAVNK 72
          AADAVKDA+NK
Sbjct: 61 AADAVKDAINK 64

[Close]

BLAST of Clc11G05512 vs. NCBI nr
Match: XP_038891139.1 (stress-induced protein KIN2-like [Benincasa hispida])

HSP 1 Score: 101.3 bits (251), Expect = 3.6e-18
Identity = 57/71 (80.28%), Postives = 61/71 (85.92%), Query Frame = 0


Query: 1  MDNSQKMSYHVGEAKGQAQVYITINLEKVSNMMDKASDVAQSAKESVQEAGQQMKAKAQG 60
          MDNSQKMSYH GEAKGQAQ       EKVS+MMDKASDVAQSAKE+VQEAGQQ+KAK QG
Sbjct: 1  MDNSQKMSYHAGEAKGQAQ-------EKVSSMMDKASDVAQSAKETVQEAGQQVKAKVQG 60

Query: 61 AADAVKDAVNK 72
          A DAVKDA+NK
Sbjct: 61 ATDAVKDAINK 64

[Close]

BLAST of Clc11G05512 vs. NCBI nr
Match: XP_038891163.1 (stress-induced protein KIN2-like [Benincasa hispida])

HSP 1 Score: 100.9 bits (250), Expect = 4.6e-18
Identity = 57/71 (80.28%), Postives = 61/71 (85.92%), Query Frame = 0


Query: 1  MDNSQKMSYHVGEAKGQAQVYITINLEKVSNMMDKASDVAQSAKESVQEAGQQMKAKAQG 60
          MDNSQKMSYH GEAKGQAQ       EKVSNMMDKA+D AQS KES+QEAGQQ+KAKAQG
Sbjct: 1  MDNSQKMSYHAGEAKGQAQ-------EKVSNMMDKANDAAQSTKESMQEAGQQIKAKAQG 60

Query: 61 AADAVKDAVNK 72
          AA+AVKDAVNK
Sbjct: 61 AAEAVKDAVNK 64

[Close]

BLAST of Clc11G05512 vs. NCBI nr
Match: XP_004141485.1 (late embryogenesis abundant protein 2 [Cucumis sativus] >KGN52546.1 hypothetical protein Csa_008504 [Cucumis sativus])

HSP 1 Score: 99.4 bits (246), Expect = 1.4e-17
Identity = 57/70 (81.43%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 2  DNSQKMSYHVGEAKGQAQVYITINLEKVSNMMDKASDVAQSAKESVQEAGQQMKAKAQGA 61
          DNSQKMSYH GEAKGQ Q       EK+SNMMDKASD AQSAKESVQE GQQM AKAQGA
Sbjct: 3  DNSQKMSYHAGEAKGQTQ-------EKMSNMMDKASDAAQSAKESVQETGQQMMAKAQGA 62

Query: 62 ADAVKDAVNK 72
          ADAVKDAVNK
Sbjct: 63 ADAVKDAVNK 65

[Close]

BLAST of Clc11G05512 vs. ExPASy TrEMBL
Match: A0A0A0KXN2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G643250 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 6.5e-18
Identity = 57/70 (81.43%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 2  DNSQKMSYHVGEAKGQAQVYITINLEKVSNMMDKASDVAQSAKESVQEAGQQMKAKAQGA 61
          DNSQKMSYH GEAKGQ Q       EK+SNMMDKASD AQSAKESVQE GQQM AKAQGA
Sbjct: 3  DNSQKMSYHAGEAKGQTQ-------EKMSNMMDKASDAAQSAKESVQETGQQMMAKAQGA 62

Query: 62 ADAVKDAVNK 72
          ADAVKDAVNK
Sbjct: 63 ADAVKDAVNK 65

[Close]

BLAST of Clc11G05512 vs. ExPASy TrEMBL
Match: A0A5D3BPC0 (Stress-induced protein KIN2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002090 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 8.5e-18
Identity = 57/71 (80.28%), Postives = 58/71 (81.69%), Query Frame = 0


Query: 1  MDNSQKMSYHVGEAKGQAQVYITINLEKVSNMMDKASDVAQSAKESVQEAGQQMKAKAQG 60
          MDNSQKMSYH GEAKGQ Q       EKVSNMMDKAS+ AQS KESVQEAGQQM AKAQG
Sbjct: 1  MDNSQKMSYHAGEAKGQTQ-------EKVSNMMDKASNAAQSTKESVQEAGQQMMAKAQG 60

Query: 61 AADAVKDAVNK 72
          A DAVKDAVNK
Sbjct: 61 ATDAVKDAVNK 64

[Close]

BLAST of Clc11G05512 vs. ExPASy TrEMBL
Match: A0A5A7TJP0 (Stress-induced protein KIN2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1167G00300 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 8.5e-18
Identity = 57/67 (85.07%), Postives = 58/67 (86.57%), Query Frame = 0


Query: 2  DNSQKMSYHVGEAKGQAQVYITINLEKVSNMMDKASDVAQSAKESVQEAGQQMKAKAQGA 61
          DNSQKMSYHVGEAKGQAQ       EK SNMMDKASD AQSAKES+QEAGQQMKAKAQGA
Sbjct: 3  DNSQKMSYHVGEAKGQAQ-------EKASNMMDKASDTAQSAKESMQEAGQQMKAKAQGA 62

Query: 62 ADAVKDA 69
          ADAVKDA
Sbjct: 63 ADAVKDA 62

[Close]

BLAST of Clc11G05512 vs. ExPASy TrEMBL
Match: A0A1S3ASP1 (stress-induced protein KIN2-like OS=Cucumis melo OX=3656 GN=LOC103482578 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 8.5e-18
Identity = 57/67 (85.07%), Postives = 58/67 (86.57%), Query Frame = 0


Query: 2  DNSQKMSYHVGEAKGQAQVYITINLEKVSNMMDKASDVAQSAKESVQEAGQQMKAKAQGA 61
          DNSQKMSYHVGEAKGQAQ       EK SNMMDKASD AQSAKES+QEAGQQMKAKAQGA
Sbjct: 3  DNSQKMSYHVGEAKGQAQ-------EKASNMMDKASDTAQSAKESMQEAGQQMKAKAQGA 62

Query: 62 ADAVKDA 69
          ADAVKDA
Sbjct: 63 ADAVKDA 62

[Close]

BLAST of Clc11G05512 vs. ExPASy TrEMBL
Match: A0A1S3CA67 (stress-induced protein KIN2-like OS=Cucumis melo OX=3656 GN=LOC103498580 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 8.5e-18
Identity = 57/71 (80.28%), Postives = 58/71 (81.69%), Query Frame = 0


Query: 1  MDNSQKMSYHVGEAKGQAQVYITINLEKVSNMMDKASDVAQSAKESVQEAGQQMKAKAQG 60
          MDNSQKMSYH GEAKGQ Q       EKVSNMMDKAS+ AQS KESVQEAGQQM AKAQG
Sbjct: 1  MDNSQKMSYHAGEAKGQTQ-------EKVSNMMDKASNAAQSTKESVQEAGQQMMAKAQG 60

Query: 61 AADAVKDAVNK 72
          A DAVKDAVNK
Sbjct: 61 ATDAVKDAVNK 64

[Close]

BLAST of Clc11G05512 vs. TAIR 10
Match: AT5G53820.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 70.9 bits (172), Expect = 4.8e-13
Identity = 38/66 (57.58%), Postives = 51/66 (77.27%), Query Frame = 0


Query: 2  DNSQKMSYHVGEAKGQAQVYITINLEKVSNMMDKASDVAQSAKESVQEAGQQMKAKAQGA 61
          +NSQ MS++ G+AKGQ Q       EK SN++DKAS+ AQSAKES+QE GQQ+K KAQGA
Sbjct: 3  NNSQSMSFNAGQAKGQTQ-------EKASNLIDKASNAAQSAKESIQEGGQQLKQKAQGA 61

Query: 62 ADAVKD 68
          ++ +K+
Sbjct: 63 SETIKE 61

[Close]

BLAST of Clc11G05512 vs. TAIR 10
Match: AT5G38760.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 67.4 bits (163), Expect = 5.3e-12
Identity = 39/66 (59.09%), Postives = 49/66 (74.24%), Query Frame = 0


Query: 3  NSQKMSYHVGEAKGQAQVYITINLEKVSNMMDKASDVAQSAKESVQEAGQQMKAKAQGAA 62
          NSQ +S+  G+AKGQ Q       EK S MMDKAS+ AQSAKES++E GQQ+K KAQGA 
Sbjct: 4  NSQNISFQAGQAKGQTQ-------EKASTMMDKASNAAQSAKESLKETGQQIKEKAQGAT 62

Query: 63 DAVKDA 69
          ++VK+A
Sbjct: 64 ESVKNA 62

[Close]

BLAST of Clc11G05512 vs. TAIR 10
Match: AT3G02480.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 66.2 bits (160), Expect = 1.2e-11
Identity = 38/67 (56.72%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 1  MDNSQKMSYHVGEAKGQAQVYITINLEKVSNMMDKASDVAQSAKESVQEAGQQMKAKAQG 60
          MDN Q  SY  G+A GQ +       EK   MMDKA D A SA++S+Q+ GQQMK KAQG
Sbjct: 1  MDNKQNASYQAGQATGQTK-------EKAGGMMDKAKDAAASAQDSLQQTGQQMKEKAQG 60

Query: 61 AADAVKD 68
          AAD VKD
Sbjct: 61 AADVVKD 60

The following BLAST results are available for this feature:

BLAST of Clc11G05512 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891080.1	1.6e-18	80.28	late embryogenesis abundant protein 2-like [Benincasa hispida]	[more]
XP_038891124.1	2.7e-18	80.28	late embryogenesis abundant protein 7-like [Benincasa hispida]	[more]
XP_038891139.1	3.6e-18	80.28	stress-induced protein KIN2-like [Benincasa hispida]	[more]
XP_038891163.1	4.6e-18	80.28	stress-induced protein KIN2-like [Benincasa hispida]	[more]
XP_004141485.1	1.4e-17	81.43	late embryogenesis abundant protein 2 [Cucumis sativus] >KGN52546.1 hypothetical...	[more]

BLAST of Clc11G05512 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc11G05512 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXN2	6.5e-18	81.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G643250 PE=4 SV=1	[more]
A0A5D3BPC0	8.5e-18	80.28	Stress-induced protein KIN2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5A7TJP0	8.5e-18	85.07	Stress-induced protein KIN2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A1S3ASP1	8.5e-18	85.07	stress-induced protein KIN2-like OS=Cucumis melo OX=3656 GN=LOC103482578 PE=4 SV...	[more]
A0A1S3CA67	8.5e-18	80.28	stress-induced protein KIN2-like OS=Cucumis melo OX=3656 GN=LOC103498580 PE=4 SV...	[more]

BLAST of Clc11G05512 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G53820.1	4.8e-13	57.58	Late embryogenesis abundant protein (LEA) family protein	[more]
AT5G38760.1	5.3e-12	59.09	Late embryogenesis abundant protein (LEA) family protein	[more]
AT3G02480.1	1.2e-11	56.72	Late embryogenesis abundant protein (LEA) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.120.20	Apolipoprotein	coord: 5..71 e-value: 3.2E-5 score: 25.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..71
None	No IPR available	PANTHER	PTHR34191:SF15	BNAA01G32930D PROTEIN	coord: 1..69
IPR039624	Stress-induced protein KIN1/KIN2	PANTHER	PTHR34191	LATE EMBRYOGENESIS ABUNDANT PROTEIN (LEA) FAMILY PROTEIN	coord: 1..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G05512.1	Clc11G05512.1	mRNA