Clc11G05505 (gene) Watermelon (cordophanus) v2

Overview
NameClc11G05505
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Descriptionstress-induced protein KIN2-like
LocationClcChr11: 5312885 .. 5313230 (-)
RNA-Seq ExpressionClc11G05505
SyntenyClc11G05505
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAACTCTCAAAAGATGAGCTATCACGCTGGAGAAGCCAAGGGCCAAGCTCAGGTTTTTCATCTATTGTCATTGTTTTTCTTATCATACATCACTTTTTAAAAGTATATGAAATTTTATAATTTATTACCATCATTGAAAAATTATCCAAATTTATTTTTTCACATTTGATATTCAAAGAGTGATAGGTAACATGTCGGTTTGTGTTCTTATATAGGAAAAGGTGAGCAATATGATGGATAAGGCAGGCGATGCAGCTCAATCGGCTAAAGAGTCAATTCAAGAGGCAGGACAACAAATGAAAGCTAAGGCTCAAAGAGGTGCTGATGCTGTCAACAAATGA

mRNA sequence

ATGGATAACTCTCAAAAGATGAGCTATCACGCTGGAGAAGCCAAGGGCCAAGCTCAGGAAAAGGTGAGCAATATGATGGATAAGGCAGGCGATGCAGCTCAATCGGCTAAAGAGTCAATTCAAGAGGCAGGACAACAAATGAAAGCTAAGGCTCAAAGAGGTGCTGATGCTGTCAACAAATGA

Coding sequence (CDS)

ATGGATAACTCTCAAAAGATGAGCTATCACGCTGGAGAAGCCAAGGGCCAAGCTCAGGAAAAGGTGAGCAATATGATGGATAAGGCAGGCGATGCAGCTCAATCGGCTAAAGAGTCAATTCAAGAGGCAGGACAACAAATGAAAGCTAAGGCTCAAAGAGGTGCTGATGCTGTCAACAAATGA

Protein sequence

MDNSQKMSYHAGEAKGQAQEKVSNMMDKAGDAAQSAKESIQEAGQQMKAKAQRGADAVNK
Homology
BLAST of Clc11G05505 vs. NCBI nr
Match: XP_038891124.1 (late embryogenesis abundant protein 7-like [Benincasa hispida])

HSP 1 Score: 95.5 bits (236), Expect = 1.6e-16
Identity = 52/58 (89.66%), Postives = 54/58 (93.10%), Query Frame = 0

Query: 1  MDNSQKMSYHAGEAKGQAQEKVSNMMDKAGDAAQSAKESIQEAGQQMKAKAQRGADAV 59
          MDNSQKMSYHAGEAKGQAQEK+SNMMDKAGDAAQSAKES+QE GQQMKAK Q  ADAV
Sbjct: 1  MDNSQKMSYHAGEAKGQAQEKLSNMMDKAGDAAQSAKESVQEVGQQMKAKVQGAADAV 58

BLAST of Clc11G05505 vs. NCBI nr
Match: XP_038891080.1 (late embryogenesis abundant protein 2-like [Benincasa hispida])

HSP 1 Score: 93.2 bits (230), Expect = 8.2e-16
Identity = 52/58 (89.66%), Postives = 53/58 (91.38%), Query Frame = 0

Query: 1  MDNSQKMSYHAGEAKGQAQEKVSNMMDKAGDAAQSAKESIQEAGQQMKAKAQRGADAV 59
          MDNSQKMSYHAGEAKGQ QEKVSNMMDKA DAAQSAKESIQEAGQQ+KAKAQ   DAV
Sbjct: 1  MDNSQKMSYHAGEAKGQTQEKVSNMMDKASDAAQSAKESIQEAGQQVKAKAQGATDAV 58

BLAST of Clc11G05505 vs. NCBI nr
Match: KAF3443960.1 (hypothetical protein FNV43_RR13650 [Rhamnella rubrinervis])

HSP 1 Score: 92.8 bits (229), Expect = 1.1e-15
Identity = 51/57 (89.47%), Postives = 53/57 (92.98%), Query Frame = 0

Query: 2  DNSQKMSYHAGEAKGQAQEKVSNMMDKAGDAAQSAKESIQEAGQQMKAKAQRGADAV 59
          DNSQKMSYHAGEAKG+AQEK  NMMDKAGDAAQSAKES+QEAGQQMKAKAQ  ADAV
Sbjct: 3  DNSQKMSYHAGEAKGRAQEKAGNMMDKAGDAAQSAKESVQEAGQQMKAKAQGAADAV 59

BLAST of Clc11G05505 vs. NCBI nr
Match: XP_038891163.1 (stress-induced protein KIN2-like [Benincasa hispida])

HSP 1 Score: 92.0 bits (227), Expect = 1.8e-15
Identity = 51/58 (87.93%), Postives = 54/58 (93.10%), Query Frame = 0

Query: 1  MDNSQKMSYHAGEAKGQAQEKVSNMMDKAGDAAQSAKESIQEAGQQMKAKAQRGADAV 59
          MDNSQKMSYHAGEAKGQAQEKVSNMMDKA DAAQS KES+QEAGQQ+KAKAQ  A+AV
Sbjct: 1  MDNSQKMSYHAGEAKGQAQEKVSNMMDKANDAAQSTKESMQEAGQQIKAKAQGAAEAV 58

BLAST of Clc11G05505 vs. NCBI nr
Match: XP_022159706.1 (stress-induced protein KIN2-like [Momordica charantia])

HSP 1 Score: 92.0 bits (227), Expect = 1.8e-15
Identity = 51/57 (89.47%), Postives = 53/57 (92.98%), Query Frame = 0

Query: 2  DNSQKMSYHAGEAKGQAQEKVSNMMDKAGDAAQSAKESIQEAGQQMKAKAQRGADAV 59
          DNSQKMSYHAGEAKGQAQEK SNMMDKA DAAQSAKES+QEAGQQ+KAKAQ  ADAV
Sbjct: 3  DNSQKMSYHAGEAKGQAQEKASNMMDKASDAAQSAKESVQEAGQQVKAKAQGAADAV 59

BLAST of Clc11G05505 vs. ExPASy TrEMBL
Match: A0A6J1E4Q8 (stress-induced protein KIN2-like OS=Momordica charantia OX=3673 GN=LOC111026049 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 8.8e-16
Identity = 51/57 (89.47%), Postives = 53/57 (92.98%), Query Frame = 0

Query: 2  DNSQKMSYHAGEAKGQAQEKVSNMMDKAGDAAQSAKESIQEAGQQMKAKAQRGADAV 59
          DNSQKMSYHAGEAKGQAQEK SNMMDKA DAAQSAKES+QEAGQQ+KAKAQ  ADAV
Sbjct: 3  DNSQKMSYHAGEAKGQAQEKASNMMDKASDAAQSAKESVQEAGQQVKAKAQGAADAV 59

BLAST of Clc11G05505 vs. ExPASy TrEMBL
Match: A0A6J1E4S0 (stress-induced protein KIN2-like OS=Momordica charantia OX=3673 GN=LOC111026055 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.4e-15
Identity = 51/57 (89.47%), Postives = 53/57 (92.98%), Query Frame = 0

Query: 2  DNSQKMSYHAGEAKGQAQEKVSNMMDKAGDAAQSAKESIQEAGQQMKAKAQRGADAV 59
          DNSQKMSYHAGEAKGQAQEK SNMMDKA DAAQSAKES+QEAGQQ+KAKAQ  ADAV
Sbjct: 3  DNSQKMSYHAGEAKGQAQEKASNMMDKASDAAQSAKESMQEAGQQVKAKAQGVADAV 59

BLAST of Clc11G05505 vs. ExPASy TrEMBL
Match: A0A5A7TJP0 (Stress-induced protein KIN2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1167G00300 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.4e-15
Identity = 50/57 (87.72%), Postives = 51/57 (89.47%), Query Frame = 0

Query: 2  DNSQKMSYHAGEAKGQAQEKVSNMMDKAGDAAQSAKESIQEAGQQMKAKAQRGADAV 59
          DNSQKMSYH GEAKGQAQEK SNMMDKA D AQSAKES+QEAGQQMKAKAQ  ADAV
Sbjct: 3  DNSQKMSYHVGEAKGQAQEKASNMMDKASDTAQSAKESMQEAGQQMKAKAQGAADAV 59

BLAST of Clc11G05505 vs. ExPASy TrEMBL
Match: A0A1S3ASP1 (stress-induced protein KIN2-like OS=Cucumis melo OX=3656 GN=LOC103482578 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.4e-15
Identity = 50/57 (87.72%), Postives = 51/57 (89.47%), Query Frame = 0

Query: 2  DNSQKMSYHAGEAKGQAQEKVSNMMDKAGDAAQSAKESIQEAGQQMKAKAQRGADAV 59
          DNSQKMSYH GEAKGQAQEK SNMMDKA D AQSAKES+QEAGQQMKAKAQ  ADAV
Sbjct: 3  DNSQKMSYHVGEAKGQAQEKASNMMDKASDTAQSAKESMQEAGQQMKAKAQGAADAV 59

BLAST of Clc11G05505 vs. ExPASy TrEMBL
Match: A0A0A0KRE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G165860 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.7e-15
Identity = 49/57 (85.96%), Postives = 52/57 (91.23%), Query Frame = 0

Query: 2  DNSQKMSYHAGEAKGQAQEKVSNMMDKAGDAAQSAKESIQEAGQQMKAKAQRGADAV 59
          DNS+KMSYH GEAKGQAQEK SN+MDKAGD AQSAKES+QEAGQQMKAKAQ  ADAV
Sbjct: 3  DNSEKMSYHIGEAKGQAQEKASNLMDKAGDTAQSAKESMQEAGQQMKAKAQGAADAV 59

BLAST of Clc11G05505 vs. TAIR 10
Match: AT5G53820.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 69.3 bits (168), Expect = 1.2e-12
Identity = 37/59 (62.71%), Postives = 49/59 (83.05%), Query Frame = 0

Query: 2  DNSQKMSYHAGEAKGQAQEKVSNMMDKAGDAAQSAKESIQEAGQQMKAKAQRGADAVNK 61
          +NSQ MS++AG+AKGQ QEK SN++DKA +AAQSAKESIQE GQQ+K KAQ  ++ + +
Sbjct: 3  NNSQSMSFNAGQAKGQTQEKASNLIDKASNAAQSAKESIQEGGQQLKQKAQGASETIKE 61

BLAST of Clc11G05505 vs. TAIR 10
Match: AT5G38760.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 65.1 bits (157), Expect = 2.2e-11
Identity = 36/56 (64.29%), Postives = 45/56 (80.36%), Query Frame = 0

Query: 3  NSQKMSYHAGEAKGQAQEKVSNMMDKAGDAAQSAKESIQEAGQQMKAKAQRGADAV 59
          NSQ +S+ AG+AKGQ QEK S MMDKA +AAQSAKES++E GQQ+K KAQ   ++V
Sbjct: 4  NSQNISFQAGQAKGQTQEKASTMMDKASNAAQSAKESLKETGQQIKEKAQGATESV 59

BLAST of Clc11G05505 vs. TAIR 10
Match: AT3G02480.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 64.3 bits (155), Expect = 3.8e-11
Identity = 36/58 (62.07%), Postives = 42/58 (72.41%), Query Frame = 0

Query: 1  MDNSQKMSYHAGEAKGQAQEKVSNMMDKAGDAAQSAKESIQEAGQQMKAKAQRGADAV 59
          MDN Q  SY AG+A GQ +EK   MMDKA DAA SA++S+Q+ GQQMK KAQ  AD V
Sbjct: 1  MDNKQNASYQAGQATGQTKEKAGGMMDKAKDAAASAQDSLQQTGQQMKEKAQGAADVV 58

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038891124.11.6e-1689.66late embryogenesis abundant protein 7-like [Benincasa hispida][more]
XP_038891080.18.2e-1689.66late embryogenesis abundant protein 2-like [Benincasa hispida][more]
KAF3443960.11.1e-1589.47hypothetical protein FNV43_RR13650 [Rhamnella rubrinervis][more]
XP_038891163.11.8e-1587.93stress-induced protein KIN2-like [Benincasa hispida][more]
XP_022159706.11.8e-1589.47stress-induced protein KIN2-like [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1E4Q88.8e-1689.47stress-induced protein KIN2-like OS=Momordica charantia OX=3673 GN=LOC111026049 ... [more]
A0A6J1E4S03.4e-1589.47stress-induced protein KIN2-like OS=Momordica charantia OX=3673 GN=LOC111026055 ... [more]
A0A5A7TJP04.4e-1587.72Stress-induced protein KIN2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27... [more]
A0A1S3ASP14.4e-1587.72stress-induced protein KIN2-like OS=Cucumis melo OX=3656 GN=LOC103482578 PE=4 SV... [more]
A0A0A0KRE15.7e-1585.96Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G165860 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G53820.11.2e-1262.71Late embryogenesis abundant protein (LEA) family protein [more]
AT5G38760.12.2e-1164.29Late embryogenesis abundant protein (LEA) family protein [more]
AT3G02480.13.8e-1162.07Late embryogenesis abundant protein (LEA) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 33..53
NoneNo IPR availableGENE3D6.10.140.1430coord: 3..60
e-value: 8.4E-6
score: 27.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..60
NoneNo IPR availablePANTHERPTHR34191:SF15BNAA01G32930D PROTEINcoord: 1..59
IPR039624Stress-induced protein KIN1/KIN2PANTHERPTHR34191LATE EMBRYOGENESIS ABUNDANT PROTEIN (LEA) FAMILY PROTEINcoord: 1..59

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc11G05505.1Clc11G05505.1mRNA