Homology
BLAST of Clc11G05420 vs. NCBI nr
Match:
XP_038890080.1 (DNA-directed RNA polymerase 2, chloroplastic/mitochondrial-like isoform X1 [Benincasa hispida])
HSP 1 Score: 1775.8 bits (4598), Expect = 0.0e+00
Identity = 896/1054 (85.01%), Postives = 941/1054 (89.28%), Query Frame = 0
Query: 1 MPFCQCSSNLTSKFDNFFLLQHPTNFHQNPSMISPSMWKTIAKQAISRNRQFHLDWHCFS 60
M FCQCSSNLTSKFDNF LL++PT FH+NP MIS SMWKT+AKQAI RNRQFHL WHCFS
Sbjct: 1 MSFCQCSSNLTSKFDNFLLLKNPTIFHENPPMISTSMWKTLAKQAICRNRQFHLGWHCFS 60
Query: 61 RSHGVLGRPNESLFRKKLISSNFVLSSLPKFGILEMGIGQNEFLSQEDYGNRFFIGSMGA 120
S GVLGRPNESLFR+KLIS NFVLSSLPKFG EMGIG+NE LSQEDYG+R GSMGA
Sbjct: 61 CSSGVLGRPNESLFREKLISGNFVLSSLPKFGSWEMGIGRNEVLSQEDYGSRLCFGSMGA 120
Query: 121 RIGLNGSCPKSYSSVAEAVSSTDVDEDASVDDEIQELLEEMSKEEKRQRQVKYRRRRLKM 180
RIGLNGSC K YSSVAEAVSSTDVDEDASVD+EIQELL+EMSKEEKRQ + RRR+KM
Sbjct: 121 RIGLNGSCSKGYSSVAEAVSSTDVDEDASVDNEIQELLQEMSKEEKRQVTCSW-RRRMKM 180
Query: 181 VNGMGEGKKYQMLRRRQVTIETEAWEQAVKEYQELLMDMCEQKLAPNLPYMKSLFLGWFE 240
V GMG G KYQMLRRRQV IETEAWEQAVKEY+ELLMDMCEQKLAP LPYMKSLFLGWFE
Sbjct: 181 VKGMGAG-KYQMLRRRQVAIETEAWEQAVKEYKELLMDMCEQKLAPTLPYMKSLFLGWFE 240
Query: 241 PLRDAISQEQELIRKGKNRTAYAPYFDQLPADMMSVITMHKLTGLLMMGHEHGSARVVQA 300
PL DAIS+EQELIR+GKNRT YAPYFDQLPADMMSVITMHKL GLLMMGHE G+ RVVQA
Sbjct: 241 PLCDAISKEQELIRQGKNRTPYAPYFDQLPADMMSVITMHKLMGLLMMGHERGNTRVVQA 300
Query: 301 ACVIGDAIEQEVRIHNFLEKMKKKKHDKDNENNDQLDSQMNEQERLRKKVTNLIKKQKLL 360
ACVIGDAIEQEVRIH FLEK KKK HDKDNENNDQ DSQM E E LR+KV+NLIKKQKL
Sbjct: 301 ACVIGDAIEQEVRIHKFLEKKKKKTHDKDNENNDQPDSQMKEHEGLRQKVSNLIKKQKLP 360
Query: 361 AVRQIVKGTDDSRPWGKDTKAKVGSRLIELLTQTAYIQPPAEQLADGPPDIRPAFRHSFR 420
AVRQI+KGTDDSRPWG+D KAKVGSRLIELLTQTAYIQPPA+QLADGPPDIRPAFRHS R
Sbjct: 361 AVRQILKGTDDSRPWGQDAKAKVGSRLIELLTQTAYIQPPADQLADGPPDIRPAFRHSLR 420
Query: 421 TAMKEATKNC-RRYGVIECHPLVVKGLERTVKHMVIPYMPMLVPPVNWTGYDKGGHIFLP 480
T MK+ATKN RRYGVIEC PLVVKGLERT +H+VIPYMPMLVPPVNWTGYDKGGHIFLP
Sbjct: 421 TVMKKATKNSGRRYGVIECDPLVVKGLERTARHIVIPYMPMLVPPVNWTGYDKGGHIFLP 480
Query: 481 SFFMRTHGAKQQRDAVKRAPKQQLTPVFEALDTLGSTKWRINKKILSVVDRIWTSGGRLA 540
SF MRTHGAKQQR+AVKRAPKQQL PVFEALDTLGSTKWRIN KILSVVDRIWTSGGRLA
Sbjct: 481 SFVMRTHGAKQQREAVKRAPKQQLAPVFEALDTLGSTKWRINVKILSVVDRIWTSGGRLA 540
Query: 541 DLVDRDDVPLPEKPDSEDETLLRKWKWDVRSLKKENMERHSQRCDIELKLAVARKMKDEE 600
DLVDRDDVP PEKPDSEDE LLRKWKW V+S+KKENMERHSQRCDIELKLAVA KMKDEE
Sbjct: 541 DLVDRDDVPFPEKPDSEDEVLLRKWKWKVKSVKKENMERHSQRCDIELKLAVAGKMKDEE 600
Query: 601 GFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLRKSGLSWLKIHLANLFAGG 660
GFYYPHN+DFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLRKSGL WLKIHLANLFAGG
Sbjct: 601 GFYYPHNIDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLRKSGLGWLKIHLANLFAGG 660
Query: 661 VDKLSHEGRMTFVENHLEEIFDSADRPLEGRRWWLNAEDPFQFLAACMNLTEALRSSSPE 720
VDKLSH+GRMTF+ENHLE+IFDSADRPLEGRRWWLNAEDPFQFLAACMNLTEALRSSSPE
Sbjct: 661 VDKLSHDGRMTFIENHLEDIFDSADRPLEGRRWWLNAEDPFQFLAACMNLTEALRSSSPE 720
Query: 721 AFISHIPIHQDGSCNGLQHYAALGRDELGAAAVNLVAGEKPADVYSGIAASIRTSNYAVV 780
FISHIPIHQDGSCNGLQHYAALGRD+LGAAAVNLVAGEKPADVY GIAA
Sbjct: 721 TFISHIPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYLGIAA---------- 780
Query: 781 LMHESVGNIFMLHLNIASNYDDLNQVLEIMRRDAQKDPATFPDALRAKTLMEQVDRKLVK 840
+VLEIMRRDAQKDPATFPDALRAKTL++QVDRKLVK
Sbjct: 781 ------------------------RVLEIMRRDAQKDPATFPDALRAKTLIDQVDRKLVK 840
Query: 841 QTVMTSVYGVTYIGARDQIKRRLKERAAISDDSEIFGCSCYAAKTTLMALGEMFEAARGI 900
QTVMTSVYGVTYIGARDQIKRRLKERAAISDDS++FGCSCYAAKTT+ ALGEMFEAARGI
Sbjct: 841 QTVMTSVYGVTYIGARDQIKRRLKERAAISDDSDLFGCSCYAAKTTMTALGEMFEAARGI 900
Query: 901 MSWLGHCAKIIASENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVLTRR 960
M+WLG CAKIIASENQPVRWTTP+GLPVVQPYRKLG H IKTSLQVLTL+RETDKVLTRR
Sbjct: 901 MNWLGDCAKIIASENQPVRWTTPIGLPVVQPYRKLGEHHIKTSLQVLTLRRETDKVLTRR 960
Query: 961 QRTAFPPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDVDEMNRILREKFVEL 1020
QRTAFPPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDVDEMNRILREKFVEL
Sbjct: 961 QRTAFPPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDVDEMNRILREKFVEL 1010
Query: 1021 YETPILENVRLSFLIFHFEHYEKQLPVCLIRVLP 1054
YETPILEN+ E +++ P + LP
Sbjct: 1021 YETPILENL--------LEGFQRSFPGLVFPPLP 1010
BLAST of Clc11G05420 vs. NCBI nr
Match:
XP_022993982.1 (DNA-directed RNA polymerase 2, chloroplastic/mitochondrial-like [Cucurbita maxima])
HSP 1 Score: 1761.9 bits (4562), Expect = 0.0e+00
Identity = 881/1056 (83.43%), Postives = 941/1056 (89.11%), Query Frame = 0
Query: 1 MPFCQCSSNLTSKFDNFFLLQHPTNFHQNPSMISPSMWKTIAKQAISRNRQFHLDWHCFS 60
M FCQCS NLT KF+NF LLQ PTNFHQNP MIS SMWKTIAKQAIS+NRQFHLDWHC S
Sbjct: 1 MSFCQCSFNLTGKFENFLLLQQPTNFHQNPPMISTSMWKTIAKQAISKNRQFHLDWHCLS 60
Query: 61 RSHGVLGRPNESLFRKKLISSNFVLSSLPKFGILEMGIGQNEFLSQEDYGNRFFIGSMGA 120
RSHGV+GR NES+ R+KLIS FVLSSLPKFGI E+GIG++E LSQ+DYG+RF GSMG
Sbjct: 61 RSHGVMGRLNESIIREKLISDKFVLSSLPKFGISELGIGRSEVLSQDDYGSRFCFGSMGV 120
Query: 121 RIGLNGSCPKSYSSVAEAVSSTDVDEDASVDDEIQELLEEMSKEEKRQRQVKYRRRRLKM 180
RIGLNGSCPK YSSVAEAVSSTDVDED+S+D+EIQELL+EM KEEK RQV+ RRR LK
Sbjct: 121 RIGLNGSCPKGYSSVAEAVSSTDVDEDSSIDEEIQELLQEMRKEEK--RQVQRRRRGLKR 180
Query: 181 VNGMGEGKKYQMLRRRQVTIETEAWEQAVKEYQELLMDMCEQKLAPNLPYMKSLFLGWFE 240
V GMGE +KYQML+RRQV IETEAW+QAVKEY+ELLMDMCEQKLAPNLPYMKSLFLGWFE
Sbjct: 181 VKGMGE-EKYQMLKRRQVAIETEAWKQAVKEYKELLMDMCEQKLAPNLPYMKSLFLGWFE 240
Query: 241 PLRDAISQEQELIRKGKNRTAYAPYFDQLPADMMSVITMHKLTGLLMMGHEHGSARVVQA 300
PLRDAIS+EQELIR GKNRTAYAPYFDQL ADMMSV+TMHKL GLLMMGHEHG+ARVVQA
Sbjct: 241 PLRDAISKEQELIRIGKNRTAYAPYFDQLSADMMSVVTMHKLMGLLMMGHEHGNARVVQA 300
Query: 301 ACVIGDAIEQEVRIHNFLEKMKKKKHDKDNENNDQLDSQMNEQERLRKKVTNLIKKQKLL 360
ACVIGDAIEQEVRIH FLEKMKKKKHDKDNENND+ DSQ+ EQERLRKKVTNLIK QKL
Sbjct: 301 ACVIGDAIEQEVRIHRFLEKMKKKKHDKDNENNDKPDSQLKEQERLRKKVTNLIKMQKLP 360
Query: 361 AVRQIVKGTDDSRPWGKDTKAKVGSRLIELLTQTAYIQPPAEQLADGPPDIRPAFRHSFR 420
AVR IVKG DDS+PWG D KAKVGSRLIELLTQTAYIQPPA+QLADGPPDIRPAFRHSFR
Sbjct: 361 AVRHIVKGADDSKPWGPDAKAKVGSRLIELLTQTAYIQPPADQLADGPPDIRPAFRHSFR 420
Query: 421 TAMKEATKN-CRRYGVIECHPLVVKGLERTVKHMVIPYMPMLVPPVNWTGYDKGGHIFLP 480
MKEA KN RRYGVIEC PLVVKGLERT +HMVIPYMPMLVPPVNWTGYDKGGHIFLP
Sbjct: 421 IVMKEANKNSSRRYGVIECDPLVVKGLERTARHMVIPYMPMLVPPVNWTGYDKGGHIFLP 480
Query: 481 SFFMRTHGAKQQRDAVKRAPKQQLTPVFEALDTLGSTKWRINKKILSVVDRIWTSGGRLA 540
SF MRT GA QQR+AVKR PKQQLTPVFEALDTLG+TKWRINKKILS+VDRIWTSGG LA
Sbjct: 481 SFIMRTRGANQQREAVKRTPKQQLTPVFEALDTLGNTKWRINKKILSIVDRIWTSGGCLA 540
Query: 541 DLVDRDDVPLPEKPDSEDETLLRKWKWDVRSLKKENMERHSQRCDIELKLAVARKMKDEE 600
DLVDRDDVPLPEKPDSEDETLLRKWKW V+S+KKEN+ERHSQRCDIELKLAVARKMKDEE
Sbjct: 541 DLVDRDDVPLPEKPDSEDETLLRKWKWKVKSVKKENVERHSQRCDIELKLAVARKMKDEE 600
Query: 601 GFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLRKSGLSWLKIHLANLFAGG 660
GFY+PHN+DFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLRKSGL WLKIHLANLFAGG
Sbjct: 601 GFYFPHNIDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLRKSGLRWLKIHLANLFAGG 660
Query: 661 VDKLSHEGRMTFVENHLEEIFDSADRPLEGRRWWLNAEDPFQFLAACMNLTEALRSSSPE 720
VDKLSH+GR+TF+++H+E+IFDSADRPLEGRRWWLNAEDPFQFLA CMNLTEALRSSSPE
Sbjct: 661 VDKLSHDGRITFIDDHVEDIFDSADRPLEGRRWWLNAEDPFQFLAGCMNLTEALRSSSPE 720
Query: 721 AFISHIPIHQDGSCNGLQHYAALGRDELGAAAVNLVAGEKPADVYSGIAASIRTSNYAVV 780
ISHIPIHQDGSCNGLQHYAALGRD+LGAAAVNL EKPADVYSGIAA
Sbjct: 721 TVISHIPIHQDGSCNGLQHYAALGRDKLGAAAVNLTVTEKPADVYSGIAA---------- 780
Query: 781 LMHESVGNIFMLHLNIASNYDDLNQVLEIMRRDAQKDPATFPDALRAKTLMEQVDRKLVK 840
+VLEI+R+DAQ+DP TFPDALRAKTL++QVDRKLVK
Sbjct: 781 ------------------------RVLEIVRKDAQRDPETFPDALRAKTLIDQVDRKLVK 840
Query: 841 QTVMTSVYGVTYIGARDQIKRRLKERAAISDDSEIFGCSCYAAKTTLMALGEMFEAARGI 900
QTVMTSVYGVTYIGARDQIKRRLKERAAISDD+E+FGC+CYAAKTTL ALGEMFEAARGI
Sbjct: 841 QTVMTSVYGVTYIGARDQIKRRLKERAAISDDTELFGCACYAAKTTLTALGEMFEAARGI 900
Query: 901 MSWLGHCAKIIASENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVLTRR 960
MSWLG CAKIIASENQPVRWTTPLGLPVVQPYRKLGRHL+KTSLQVLTLQ+ETDKVL +R
Sbjct: 901 MSWLGDCAKIIASENQPVRWTTPLGLPVVQPYRKLGRHLVKTSLQVLTLQQETDKVLVKR 960
Query: 961 QRTAFPPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDVDEMNRILREKFVEL 1020
QRTAFPPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDVDEMNRILREKFVEL
Sbjct: 961 QRTAFPPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDVDEMNRILREKFVEL 1011
Query: 1021 YETPILENVRLSFLIFHFEHYEKQLPVCLIRVLPAK 1056
YETPILEN+ E +++ PV LP +
Sbjct: 1021 YETPILENL--------LEGFQQSFPVLDFPPLPER 1011
BLAST of Clc11G05420 vs. NCBI nr
Match:
XP_022939617.1 (DNA-directed RNA polymerase 2, chloroplastic/mitochondrial-like [Cucurbita moschata])
HSP 1 Score: 1749.2 bits (4529), Expect = 0.0e+00
Identity = 872/1033 (84.41%), Postives = 929/1033 (89.93%), Query Frame = 0
Query: 1 MPFCQCSSNLTSKFDNFFLLQHPTNFHQNPSMISPSMWKTIAKQAISRNRQFHLDWHCFS 60
M FCQCS NLT KF+NF LLQ PTNFHQNP MIS SMWKTIAKQAIS+NRQFHLDWHC S
Sbjct: 1 MSFCQCSFNLTGKFENFLLLQQPTNFHQNPPMISTSMWKTIAKQAISKNRQFHLDWHCLS 60
Query: 61 RSHGVLGRPNESLFRKKLISSNFVLSSLPKFGILEMGIGQNEFLSQEDYGNRFFIGSMGA 120
RSHGV+GR NES+ R+KLIS FVLSSLPKFGI E+GIG++E LSQEDYG+RF GSMG
Sbjct: 61 RSHGVMGRLNESIIREKLISDKFVLSSLPKFGISELGIGRSEVLSQEDYGSRFCFGSMGV 120
Query: 121 RIGLNGSCPKSYSSVAEAVSSTDVDEDASVDDEIQELLEEMSKEEKRQRQVKYRRRRLKM 180
RIGLNGS PK YSSVAEAVSSTDVDED+S D+EIQELL+EM KEEK RQV+ RRRRLK
Sbjct: 121 RIGLNGSIPKGYSSVAEAVSSTDVDEDSSSDEEIQELLQEMRKEEK--RQVQRRRRRLKW 180
Query: 181 VNGMGEGKKYQMLRRRQVTIETEAWEQAVKEYQELLMDMCEQKLAPNLPYMKSLFLGWFE 240
V GMGE +KYQML+RRQV IETEAW+QAVKEY+ELLMDMCEQKLAPNLPYMKSLFLGWFE
Sbjct: 181 VKGMGE-QKYQMLKRRQVAIETEAWKQAVKEYKELLMDMCEQKLAPNLPYMKSLFLGWFE 240
Query: 241 PLRDAISQEQELIRKGKNRTAYAPYFDQLPADMMSVITMHKLTGLLMMGHEHGSARVVQA 300
PLRDAIS+EQELIR GKNR AYAPYFDQL ADMMSV+TMHKL GLLMMGHEHG+ARVVQA
Sbjct: 241 PLRDAISKEQELIRIGKNRAAYAPYFDQLSADMMSVVTMHKLIGLLMMGHEHGNARVVQA 300
Query: 301 ACVIGDAIEQEVRIHNFLEKMKKKKHDKDNENNDQLDSQMNEQERLRKKVTNLIKKQKLL 360
AC IGDAIEQEVRIH FLEKMKKKKHDKDNENND+ DSQ+ EQE LRKKVTNLIKKQKL
Sbjct: 301 ACAIGDAIEQEVRIHRFLEKMKKKKHDKDNENNDKPDSQLKEQEWLRKKVTNLIKKQKLP 360
Query: 361 AVRQIVKGTDDSRPWGKDTKAKVGSRLIELLTQTAYIQPPAEQLADGPPDIRPAFRHSFR 420
AVR IVKG DDS+PWG D KAKVGSRLIELLTQTAYIQPPA+QLADGPPDIRPAFRHSFR
Sbjct: 361 AVRHIVKGADDSKPWGPDAKAKVGSRLIELLTQTAYIQPPADQLADGPPDIRPAFRHSFR 420
Query: 421 TAMKEATKN-CRRYGVIECHPLVVKGLERTVKHMVIPYMPMLVPPVNWTGYDKGGHIFLP 480
MKEA KN RRYGVIEC PLVVKGLE+T +HMVIPYMPMLVPPVNWTGYDKGGHIFLP
Sbjct: 421 IVMKEANKNSSRRYGVIECDPLVVKGLEKTARHMVIPYMPMLVPPVNWTGYDKGGHIFLP 480
Query: 481 SFFMRTHGAKQQRDAVKRAPKQQLTPVFEALDTLGSTKWRINKKILSVVDRIWTSGGRLA 540
SF MRT GA QQR+AVKR PKQQLTPVFEALDTLG+TKWRINKKILS+VDRIWTSGGRLA
Sbjct: 481 SFIMRTRGANQQREAVKRTPKQQLTPVFEALDTLGNTKWRINKKILSIVDRIWTSGGRLA 540
Query: 541 DLVDRDDVPLPEKPDSEDETLLRKWKWDVRSLKKENMERHSQRCDIELKLAVARKMKDEE 600
DLVDRDDVPLPEKPDSEDETLLRKWKW V+S+KKEN+ERHSQRCDIELKLAVA KMKDEE
Sbjct: 541 DLVDRDDVPLPEKPDSEDETLLRKWKWKVKSVKKENVERHSQRCDIELKLAVAHKMKDEE 600
Query: 601 GFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLRKSGLSWLKIHLANLFAGG 660
GFYYPHN+DFRGRAYPMHP+LNHLGSDLCRGILEFAEGRPL KSGL WLKIHLANLFAGG
Sbjct: 601 GFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLFAGG 660
Query: 661 VDKLSHEGRMTFVENHLEEIFDSADRPLEGRRWWLNAEDPFQFLAACMNLTEALRSSSPE 720
VDKLSH+GR+TF+++H+E+IFDSADRPLEGRRWWLNAEDPFQFLA CMNLTEALRSSSPE
Sbjct: 661 VDKLSHDGRITFIDDHVEDIFDSADRPLEGRRWWLNAEDPFQFLAGCMNLTEALRSSSPE 720
Query: 721 AFISHIPIHQDGSCNGLQHYAALGRDELGAAAVNLVAGEKPADVYSGIAASIRTSNYAVV 780
ISHIPIHQDGSCNGLQHYAALGRD+LGAAAVNL EKPADVYSGIAA
Sbjct: 721 TVISHIPIHQDGSCNGLQHYAALGRDKLGAAAVNLAVREKPADVYSGIAA---------- 780
Query: 781 LMHESVGNIFMLHLNIASNYDDLNQVLEIMRRDAQKDPATFPDALRAKTLMEQVDRKLVK 840
+VLEI+R+DAQ+DP TFPDALRAKTL++QVDRKLVK
Sbjct: 781 ------------------------RVLEIVRKDAQRDPETFPDALRAKTLIDQVDRKLVK 840
Query: 841 QTVMTSVYGVTYIGARDQIKRRLKERAAISDDSEIFGCSCYAAKTTLMALGEMFEAARGI 900
QTVMTSVYGVTYIGARDQIKRRLKERAAISDD+E+FGC+CYAAKTTL ALGEMFEAARGI
Sbjct: 841 QTVMTSVYGVTYIGARDQIKRRLKERAAISDDTELFGCACYAAKTTLTALGEMFEAARGI 900
Query: 901 MSWLGHCAKIIASENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVLTRR 960
MSWLG CAKIIASENQPVRWTTPLGLPVVQPYRKLG+HL+KTSLQVLTLQ+ETDKVL +R
Sbjct: 901 MSWLGDCAKIIASENQPVRWTTPLGLPVVQPYRKLGKHLVKTSLQVLTLQQETDKVLVKR 960
Query: 961 QRTAFPPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDVDEMNRILREKFVEL 1020
QRTAFPPNFVHSLDGSHMMMTAVACK+AGLNFAGVHDSYWTHACDVDEMNRILREKFVEL
Sbjct: 961 QRTAFPPNFVHSLDGSHMMMTAVACKRAGLNFAGVHDSYWTHACDVDEMNRILREKFVEL 996
Query: 1021 YETPILENVRLSF 1033
YETPILEN+ F
Sbjct: 1021 YETPILENLLEGF 996
BLAST of Clc11G05420 vs. NCBI nr
Match:
XP_022134053.1 (DNA-directed RNA polymerase 2, chloroplastic/mitochondrial-like [Momordica charantia])
HSP 1 Score: 1720.7 bits (4455), Expect = 0.0e+00
Identity = 869/1058 (82.14%), Postives = 928/1058 (87.71%), Query Frame = 0
Query: 1 MPFCQCSSNLTSKFDNF--FLLQHPTNFHQNPSMISPSMWKTIAKQAISRNRQFHLDWHC 60
M FCQCSSNLTSKFD+ LQ PTNFH PSMIS S+WK IAKQAISRNR+F LDWH
Sbjct: 1 MSFCQCSSNLTSKFDHHHSLPLQKPTNFHLAPSMISTSVWKIIAKQAISRNRKFRLDWHS 60
Query: 61 FSRSHGVLGRPNESLFRKKLISSNFVLSSLPKFGILEMGIGQNEFLSQEDYGNRFFIGSM 120
FSRSHGVLGRP+ESLF +K +S + V SSLPKFG EM IG+NE LSQE YG+RF GS+
Sbjct: 61 FSRSHGVLGRPHESLFPEKFMSGSSVFSSLPKFGTWEMDIGRNEILSQEVYGSRFCFGSV 120
Query: 121 GARIGLNGSCPKSYSSVAEAVSSTDVDEDASVDDEIQELLEEMSKEEKRQRQVKYRRRRL 180
G RIGLNG CPK +SSVAEAVSSTDVDEDASVDDEIQELL+EM+KEEK RQV+YRRRR
Sbjct: 121 GTRIGLNGMCPKGFSSVAEAVSSTDVDEDASVDDEIQELLQEMTKEEK--RQVEYRRRRQ 180
Query: 181 KMVNGMGEGKKYQMLRRRQVTIETEAWEQAVKEYQELLMDMCEQKLAPNLPYMKSLFLGW 240
KM GMG+G KYQML+RRQV IETEAWE AVKEY+ELLMDMCEQKLAPNLPYMKSLFLGW
Sbjct: 181 KMAKGMGQG-KYQMLKRRQVKIETEAWELAVKEYKELLMDMCEQKLAPNLPYMKSLFLGW 240
Query: 241 FEPLRDAISQEQELIRKGKNRTAYAPYFDQLPADMMSVITMHKLTGLLMMGHEHGSARVV 300
FEPLRDAI +EQELIR+GKNRTAYAPYFD+LPADMMSVITMHKL GLLMMGHEHG+ARVV
Sbjct: 241 FEPLRDAIIKEQELIREGKNRTAYAPYFDRLPADMMSVITMHKLMGLLMMGHEHGNARVV 300
Query: 301 QAACVIGDAIEQEVRIHNFLEKMKKKKHDKDNENNDQLDSQMNEQERLRKKVTNLIKKQK 360
QAACVIGDAIEQE+RIHNFLEKMKKKKHDKD ENND+ DS + EQE+LRKKVTNLIKKQK
Sbjct: 301 QAACVIGDAIEQEIRIHNFLEKMKKKKHDKDGENNDKPDSLIKEQEKLRKKVTNLIKKQK 360
Query: 361 LLAVRQIVKGTDDSRPWGKDTKAKVGSRLIELLTQTAYIQPPAEQLADGPPDIRPAFRHS 420
L AVRQIVKG DDS+PWG+D KAKVGSRLIELLTQTAYIQPPA+QLADGPPDIRPAFRHS
Sbjct: 361 LPAVRQIVKGADDSKPWGQDAKAKVGSRLIELLTQTAYIQPPADQLADGPPDIRPAFRHS 420
Query: 421 FRTAMKEATKN-CRRYGVIECHPLVVKGLERTVKHMVIPYMPMLVPPVNWTGYDKGGHIF 480
FRT MKEA KN RRYGVIEC PLVVKGLERT +HMVIPYMPMLVPPVNWTGYDKGGHIF
Sbjct: 421 FRTVMKEANKNSSRRYGVIECDPLVVKGLERTARHMVIPYMPMLVPPVNWTGYDKGGHIF 480
Query: 481 LPSFFMRTHGAKQQRDAVKRAPKQQLTPVFEALDTLGSTKWRINKKILSVVDRIWTSGGR 540
LPSF MRTHGAKQQRDAVKR PKQQLTPVFEALDTLG+TKWRINK+ILSVVDRIWT GGR
Sbjct: 481 LPSFVMRTHGAKQQRDAVKRTPKQQLTPVFEALDTLGNTKWRINKRILSVVDRIWTGGGR 540
Query: 541 LADLVDRDDVPLPEKPDSEDETLLRKWKWDVRSLKKENMERHSQRCDIELKLAVARKMKD 600
LADLVDRDDVPLPEKPDSEDETLLRKWKW V+S+KKENMERHSQRCDIELKLAVARKMKD
Sbjct: 541 LADLVDRDDVPLPEKPDSEDETLLRKWKWKVKSVKKENMERHSQRCDIELKLAVARKMKD 600
Query: 601 EEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLRKSGLSWLKIHLANLFA 660
EEGFYYPHN+DFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLRKSGL+WLKIHLANLFA
Sbjct: 601 EEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLRKSGLNWLKIHLANLFA 660
Query: 661 GGVDKLSHEGRMTFVENHLEEIFDSADRPLEGRRWWLNAEDPFQFLAACMNLTEALRSSS 720
GGVDKLSH+GRMTF+ENHLE+IFDSADRPLEGRRWWLNAEDPFQFLAACMNLTEALRS S
Sbjct: 661 GGVDKLSHDGRMTFIENHLEDIFDSADRPLEGRRWWLNAEDPFQFLAACMNLTEALRSFS 720
Query: 721 PEAFISHIPIHQDGSCNGLQHYAALGRDELGAAAVNLVAGEKPADVYSGIAASIRTSNYA 780
PE FISHIP+HQDGSCNGLQHYAALGRD+LGA AVNLV GEKPADVY+GIAA
Sbjct: 721 PETFISHIPVHQDGSCNGLQHYAALGRDKLGATAVNLVTGEKPADVYTGIAA-------- 780
Query: 781 VVLMHESVGNIFMLHLNIASNYDDLNQVLEIMRRDAQKDPATFPDALRAKTLMEQVDRKL 840
+VLEIM+RDAQ+DPA FPDALRAK L++QVDRKL
Sbjct: 781 --------------------------RVLEIMQRDAQRDPAIFPDALRAKRLIDQVDRKL 840
Query: 841 VKQTVMTSVYGVTYIGARDQIKRRLKERAAISDDSEIFGCSCYAAKTTLMALGEMFEAAR 900
VKQTVMTSVYGVTYIGARDQIKRRLKERA+IS + + + + TL ALGEMFEAAR
Sbjct: 841 VKQTVMTSVYGVTYIGARDQIKRRLKERASISXXXXVMSSNIMSEQITLTALGEMFEAAR 900
Query: 901 GIMSWLGHCAKIIASENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVLT 960
GIM+WLG CAKIIASENQPVRWTTPLGLPVVQPYR LGRHLIKTSLQVLTLQRETDKVL
Sbjct: 901 GIMNWLGDCAKIIASENQPVRWTTPLGLPVVQPYRVLGRHLIKTSLQVLTLQRETDKVLA 960
Query: 961 RRQRTAFPPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDVDEMNRILREKFV 1020
+RQRTAFPPNFVHSLDGSHMMMTAVACKKAGL+FAGVHDSYWTHACDVDEMNRILREKFV
Sbjct: 961 KRQRTAFPPNFVHSLDGSHMMMTAVACKKAGLSFAGVHDSYWTHACDVDEMNRILREKFV 1013
Query: 1021 ELYETPILENVRLSFLIFHFEHYEKQLPVCLIRVLPAK 1056
ELYE PILEN+ E +++ P LP +
Sbjct: 1021 ELYEMPILENL--------LEGFQRSFPTLNFPPLPER 1013
BLAST of Clc11G05420 vs. NCBI nr
Match:
XP_023551171.1 (DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 1704.5 bits (4413), Expect = 0.0e+00
Identity = 850/1002 (84.83%), Postives = 904/1002 (90.22%), Query Frame = 0
Query: 32 MISPSMWKTIAKQAISRNRQFHLDWHCFSRSHGVLGRPNESLFRKKLISSNFVLSSLPKF 91
MIS SMWKTIAKQAIS+NRQFHLDWHC SRSHGV+GR NES+ +KLIS FVLSSLPKF
Sbjct: 1 MISTSMWKTIAKQAISKNRQFHLDWHCLSRSHGVMGRLNESIISEKLISDKFVLSSLPKF 60
Query: 92 GILEMGIGQNEFLSQEDYGNRFFIGSMGARIGLNGSCPKSYSSVAEAVSSTDVDEDASVD 151
GI E+GIG++E LSQEDYG+RF GSMG RIGLNGS PK YSSVAEAVSSTDVDED+S+D
Sbjct: 61 GISELGIGRSEVLSQEDYGSRFCFGSMGVRIGLNGSFPKGYSSVAEAVSSTDVDEDSSID 120
Query: 152 DEIQELLEEMSKEEKRQRQVKYRRRRLKMVNGMGEGKKYQMLRRRQVTIETEAWEQAVKE 211
+EIQELL+EM KEEK RQV+ RRRRLK V GMGE +KYQML+RRQV IETEAW+QAVKE
Sbjct: 121 EEIQELLQEMRKEEK--RQVQRRRRRLKRVKGMGE-QKYQMLKRRQVAIETEAWKQAVKE 180
Query: 212 YQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAISQEQELIRKGKNRTAYAPYFDQLPA 271
Y+ELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIS+EQELIR GKNR AYAPYFDQL A
Sbjct: 181 YKELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAISKEQELIRIGKNRAAYAPYFDQLSA 240
Query: 272 DMMSVITMHKLTGLLMMGHEHGSARVVQAACVIGDAIEQEVRIHNFLEKMKKKKHDKDNE 331
DMMSV+TMHKL GLLMMGHEHG+ARVVQAAC IGDAIEQEVRIH FLEKMKKKKHDKDNE
Sbjct: 241 DMMSVVTMHKLIGLLMMGHEHGNARVVQAACAIGDAIEQEVRIHRFLEKMKKKKHDKDNE 300
Query: 332 NNDQLDSQMNEQERLRKKVTNLIKKQKLLAVRQIVKGTDDSRPWGKDTKAKVGSRLIELL 391
NND+ DSQ+ EQE LRKKVTNLIKKQKL AVR IVKGTDDS+PWG D KAKVGSRLIELL
Sbjct: 301 NNDKPDSQLKEQEWLRKKVTNLIKKQKLPAVRHIVKGTDDSKPWGPDAKAKVGSRLIELL 360
Query: 392 TQTAYIQPPAEQLADGPPDIRPAFRHSFRTAMKEATKN-CRRYGVIECHPLVVKGLERTV 451
TQTAYIQPP +QLADGPPDIRPAFRHSFR MKEA KN RRYGVIEC PLVV GLERT
Sbjct: 361 TQTAYIQPPVDQLADGPPDIRPAFRHSFRIVMKEANKNSSRRYGVIECDPLVVNGLERTA 420
Query: 452 KHMVIPYMPMLVPPVNWTGYDKGGHIFLPSFFMRTHGAKQQRDAVKRAPKQQLTPVFEAL 511
+HMVIPYMPMLVPPVNWTGYDKGGHIFLPSF MRT GA QQR+AVKR PKQQLTPVFEAL
Sbjct: 421 RHMVIPYMPMLVPPVNWTGYDKGGHIFLPSFIMRTRGANQQREAVKRTPKQQLTPVFEAL 480
Query: 512 DTLGSTKWRINKKILSVVDRIWTSGGRLADLVDRDDVPLPEKPDSEDETLLRKWKWDVRS 571
DTLG+TKWRINKKILS+VDRIWTSGGRLADLVDRDDVPLPEKPDSEDETLLRKWKW V+S
Sbjct: 481 DTLGNTKWRINKKILSIVDRIWTSGGRLADLVDRDDVPLPEKPDSEDETLLRKWKWKVKS 540
Query: 572 LKKENMERHSQRCDIELKLAVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRG 631
+KKENMERHSQRCDIELKLAVARKMKDEEGFYYPHN+DFRGRAYPMHPYLNHLGSDLCRG
Sbjct: 541 VKKENMERHSQRCDIELKLAVARKMKDEEGFYYPHNIDFRGRAYPMHPYLNHLGSDLCRG 600
Query: 632 ILEFAEGRPLRKSGLSWLKIHLANLFAGGVDKLSHEGRMTFVENHLEEIFDSADRPLEGR 691
ILEFAEGRPLRKSGL WLKIHLANLFAGGVDKLSH+GRMTF++NH+E+IFDSADRPLEGR
Sbjct: 601 ILEFAEGRPLRKSGLRWLKIHLANLFAGGVDKLSHDGRMTFIDNHVEDIFDSADRPLEGR 660
Query: 692 RWWLNAEDPFQFLAACMNLTEALRSSSPEAFISHIPIHQDGSCNGLQHYAALGRDELGAA 751
RWWLNAEDPFQFLA CMNLTEALR+SSPE ISHIPIHQDGSCNGLQHYAALGRD+LGAA
Sbjct: 661 RWWLNAEDPFQFLAGCMNLTEALRNSSPETVISHIPIHQDGSCNGLQHYAALGRDKLGAA 720
Query: 752 AVNLVAGEKPADVYSGIAASIRTSNYAVVLMHESVGNIFMLHLNIASNYDDLNQVLEIMR 811
AVNL EKPADVYSGIAA +VLEI+R
Sbjct: 721 AVNLAVREKPADVYSGIAA----------------------------------RVLEIVR 780
Query: 812 RDAQKDPATFPDALRAKTLMEQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERAAISD 871
+DAQ+DP TFPDALRAKTL++QVDRKLVKQTVMTSVYGVTYIGAR+QIKRRLKERA ISD
Sbjct: 781 KDAQRDPETFPDALRAKTLIDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLKERAVISD 840
Query: 872 DSEIFGCSCYAAKTTLMALGEMFEAARGIMSWLGHCAKIIASENQPVRWTTPLGLPVVQP 931
D+E+FGC+CYAAKTTL ALGEMFEAARGIMSWLG CAKIIASENQPVRWTTPLGLPVVQP
Sbjct: 841 DTELFGCACYAAKTTLTALGEMFEAARGIMSWLGDCAKIIASENQPVRWTTPLGLPVVQP 900
Query: 932 YRKLGRHLIKTSLQVLTLQRETDKVLTRRQRTAFPPNFVHSLDGSHMMMTAVACKKAGLN 991
YRKLG+H++KTSLQVLTLQ+ETDKVL +RQRTAFPPNFVHSLDGSHMMMTAVACKKAGLN
Sbjct: 901 YRKLGKHIVKTSLQVLTLQQETDKVLVKRQRTAFPPNFVHSLDGSHMMMTAVACKKAGLN 960
Query: 992 FAGVHDSYWTHACDVDEMNRILREKFVELYETPILENVRLSF 1033
FAGVHDSYWTHACDVDEMNRILREKFVELYETPILEN+ F
Sbjct: 961 FAGVHDSYWTHACDVDEMNRILREKFVELYETPILENLLEGF 965
BLAST of Clc11G05420 vs. ExPASy Swiss-Prot
Match:
Q8VWF8 (DNA-directed RNA polymerase 2, chloroplastic/mitochondrial OS=Nicotiana sylvestris OX=4096 GN=RPOT2 PE=2 SV=2)
HSP 1 Score: 1393.3 bits (3605), Expect = 0.0e+00
Identity = 713/1049 (67.97%), Postives = 831/1049 (79.22%), Query Frame = 0
Query: 9 NLTSKFDNFFLLQHPTNFHQNPSMISPSMWKTIAKQAISRNRQFHLDWHCFSRSHGVLGR 68
+LT K + F PT NP SP MW+ I KQ SR Q L + +R++ LG
Sbjct: 9 SLTIKLNQF--TDKPTGLDINPYHNSPIMWRNIIKQLSSRTPQ-KLLFSSKNRTYSFLGF 68
Query: 69 PNESLFRKKLISSNFVLSSLPKFGILEMGIGQNEFLSQEDYGNRFFIGSMGARIGLNGSC 128
+S+F+ + + S + +G E+L +++ +R I + ++ N C
Sbjct: 69 GQDSIFKDNTKFRSLIPISCSNIVMGFQNLG--EYLPGDEFLSRPLIKN---QVNNNFCC 128
Query: 129 PKSYSSVAE--AVSSTDVDEDASVDDEIQELLEEMSKEEKRQRQVKYRRRRLKMVNGMGE 188
KSY+SVAE AVSSTD +ED SV DE+ ELL E+ KEEK+Q + R++R+ + +GMG
Sbjct: 129 RKSYASVAEAVAVSSTDAEEDVSVVDEVHELLTELKKEEKKQFAFRRRKQRM-LTSGMGH 188
Query: 189 GKKYQMLRRRQVTIETEAWEQAVKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAI 248
+KYQ L+RRQV +ETEAWEQA KEY+ELL DMCEQKLAPNLPY+KSLFLGWFEPLRD I
Sbjct: 189 -RKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKI 248
Query: 249 SQEQELIRKGKNRTAYAPYFDQLPADMMSVITMHKLTGLLMMGHEHGSARVVQAACVIGD 308
++EQEL +GK++ AYA YF QLPADMM+VITMHKL GLLM G +HG+ARVVQAA VIGD
Sbjct: 249 AEEQELCSQGKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQAALVIGD 308
Query: 309 AIEQEVRIHNFLEKMKKKKHDKDNENNDQLDSQMNEQERLRKKVTNLIKKQKLLAVRQIV 368
AIEQEVRIHNFLEK KK+K +KD + D + EQE+LRKKVTNL+KKQKL AV QIV
Sbjct: 309 AIEQEVRIHNFLEKTKKQKAEKDKQKEDG-EHVTQEQEKLRKKVTNLMKKQKLRAVGQIV 368
Query: 369 KGTDDSRPWGKDTKAKVGSRLIELLTQTAYIQPPAEQLADGPPDIRPAFRHSFRTAMKEA 428
+ DDS+PWG+D +AKVGSRLI+LL QTAYIQPPA QLA PPDIRPAF HS RT KE
Sbjct: 369 RRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDIRPAFVHSVRTVAKET 428
Query: 429 TKNCRRYGVIECHPLVVKGLERTVKHMVIPYMPMLVPPVNWTGYDKGGHIFLPSFFMRTH 488
RRYG+I+C LV KGLERT +HMVIPYMPMLVPPV WTGYDKGGH++LPS+ MRTH
Sbjct: 429 KSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMRTH 488
Query: 489 GAKQQRDAVKRAPKQQLTPVFEALDTLGSTKWRINKKILSVVDRIWTSGGRLADLVDRDD 548
GA+QQR+AVKRA + QL PVFEALDTLG+TKWRINK++LSVVDRIW GGRLADLVDRDD
Sbjct: 489 GARQQREAVKRASRNQLQPVFEALDTLGNTKWRINKRVLSVVDRIWAGGGRLADLVDRDD 548
Query: 549 VPLPEKPDSEDETLLRKWKWDVRSLKKENMERHSQRCDIELKLAVARKMKDEEGFYYPHN 608
PLPE+PD+EDE L KW+W V+S+KKEN ERHSQRCDIELKLAVARKMKDEE F+YPHN
Sbjct: 549 APLPEEPDTEDEALRTKWRWKVKSVKKENRERHSQRCDIELKLAVARKMKDEESFFYPHN 608
Query: 609 VDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLRKSGLSWLKIHLANLFAGGVDKLSHE 668
VDFRGRAYPMHP+LNHLGSD+CRG+LEFAEGRPL +SGL WLKIHLANLFAGGV+KLS E
Sbjct: 609 VDFRGRAYPMHPHLNHLGSDICRGVLEFAEGRPLGESGLRWLKIHLANLFAGGVEKLSLE 668
Query: 669 GRMTFVENHLEEIFDSADRPLEGRRWWLNAEDPFQFLAACMNLTEALRSSSPEAFISHIP 728
GR+ F ENH+++IFDS+D+PLEGRRWWLNAEDPFQ LA C+NL+EA+RSSSPE +SHIP
Sbjct: 669 GRIGFTENHMDDIFDSSDKPLEGRRWWLNAEDPFQCLAVCINLSEAVRSSSPETSVSHIP 728
Query: 729 IHQDGSCNGLQHYAALGRDELGAAAVNLVAGEKPADVYSGIAASIRTSNYAVVLMHESVG 788
+HQDGSCNGLQHYAALGRD+LGAAAVNLVAGEKPADVYSGIAA
Sbjct: 729 VHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAA----------------- 788
Query: 789 NIFMLHLNIASNYDDLNQVLEIMRRDAQKDPATFPDALRAKTLMEQVDRKLVKQTVMTSV 848
+VL+IM+RDAQ+DPA FPDA+RA+ L+ QVDRKLVKQTVMTSV
Sbjct: 789 -----------------RVLDIMKRDAQRDPAEFPDAVRARVLVNQVDRKLVKQTVMTSV 848
Query: 849 YGVTYIGARDQIKRRLKERAAISDDSEIFGCSCYAAKTTLMALGEMFEAARGIMSWLGHC 908
YGVTYIGARDQIKRRLKER AI+DDSE+FG +CYAAK TL ALGEMFEAAR IM+WLG C
Sbjct: 849 YGVTYIGARDQIKRRLKERGAIADDSELFGAACYAAKVTLTALGEMFEAARSIMTWLGEC 908
Query: 909 AKIIASENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVLTRRQRTAFPP 968
AKIIASEN+PVRWTTPLGLPVVQPYRK+GRHLIKTSLQ+LTLQRET+KV+ +RQRTAFPP
Sbjct: 909 AKIIASENEPVRWTTPLGLPVVQPYRKIGRHLIKTSLQILTLQRETEKVMVKRQRTAFPP 968
Query: 969 NFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYETPILE 1028
NF+HSLDGSHMMMTAVAC++AGLNFAGVHDSYWTHACDVD++NRILREKFVELYE PILE
Sbjct: 969 NFIHSLDGSHMMMTAVACRRAGLNFAGVHDSYWTHACDVDKLNRILREKFVELYEAPILE 1004
Query: 1029 NVRLSFLIFHFEHYEKQLPVCLIRVLPAK 1056
+ E ++ P L LP +
Sbjct: 1029 KL--------LESFQTSYPTLLFPPLPER 1004
BLAST of Clc11G05420 vs. ExPASy Swiss-Prot
Match:
Q8L6J3 (DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial OS=Nicotiana tabacum OX=4097 GN=RPOT2-TOM PE=2 SV=2)
HSP 1 Score: 1392.1 bits (3602), Expect = 0.0e+00
Identity = 716/1050 (68.19%), Postives = 831/1050 (79.14%), Query Frame = 0
Query: 9 NLTSKFDNFFLLQHPTNFHQNPSMISPSMWKTIAKQAISRNRQFHLDWHCFSRSHGVLGR 68
+LT K + F PT N SP MW+ I KQ SR Q L + +R++ LG
Sbjct: 9 SLTIKLNQF--TDKPTGLDINRYHNSPIMWRNIIKQLSSRTPQ-KLLFSSKNRTYSFLGF 68
Query: 69 PNESLFRKKLISSNFVLSSLPKFGILEMGIGQNEFLSQEDYGNRFFIGSMGARIGLNG-S 128
+S+F+ + + S + +G E+L +++ +R + + ++ N
Sbjct: 69 GQDSVFKDNTKFRSLIPISCSNIVMGFQNLG--EYLPGDEFLSRPLLKN---QVNSNDFC 128
Query: 129 CPKSYSSVAE--AVSSTDVDEDASVDDEIQELLEEMSKEEKRQRQVKYRRRRLKMVNGMG 188
C KSY+SVAE AVSSTD +ED SV DE+QELL E+ KEEK+Q + R++R+ + +GMG
Sbjct: 129 CRKSYASVAEAVAVSSTDAEEDVSVVDEVQELLTELKKEEKKQFAFRRRKQRM-LTSGMG 188
Query: 189 EGKKYQMLRRRQVTIETEAWEQAVKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDA 248
+KYQ L+RRQV +ETEAWEQA KEY+ELL DMCEQKLAPNLPY+KSLFLGWFEPLRD
Sbjct: 189 H-RKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDK 248
Query: 249 ISQEQELIRKGKNRTAYAPYFDQLPADMMSVITMHKLTGLLMMGHEHGSARVVQAACVIG 308
I++EQEL +GK++ AYA Y QLPADMM+VITMHKL GLLM G +HG+ARVVQAA VIG
Sbjct: 249 IAEEQELCSQGKSKAAYAKYLYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQAALVIG 308
Query: 309 DAIEQEVRIHNFLEKMKKKKHDKDNENNDQLDSQMNEQERLRKKVTNLIKKQKLLAVRQI 368
DAIEQEVRIHNFLEK KK+K +KD + D + EQE+LRKKVTNL+KKQKL AV QI
Sbjct: 309 DAIEQEVRIHNFLEKTKKQKAEKDKQKEDG-EHVTQEQEKLRKKVTNLMKKQKLRAVGQI 368
Query: 369 VKGTDDSRPWGKDTKAKVGSRLIELLTQTAYIQPPAEQLADGPPDIRPAFRHSFRTAMKE 428
V+ DDS+PWG+D KAKVGSRLIELL QTAYIQPPA QLA PPDIRPAF HS RT KE
Sbjct: 369 VRRQDDSKPWGQDAKAKVGSRLIELLLQTAYIQPPANQLAVDPPDIRPAFLHSVRTVAKE 428
Query: 429 ATKNCRRYGVIECHPLVVKGLERTVKHMVIPYMPMLVPPVNWTGYDKGGHIFLPSFFMRT 488
RRYG+I+C LV KGLERT +HMVIPYMPMLVPPV WTGYDKGGH++LPS+ MRT
Sbjct: 429 TKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMRT 488
Query: 489 HGAKQQRDAVKRAPKQQLTPVFEALDTLGSTKWRINKKILSVVDRIWTSGGRLADLVDRD 548
HGA+QQR+AVKRA + QL PVFEALDTLGSTKWRINK++LSV+DRIW GGRLADLVDRD
Sbjct: 489 HGARQQREAVKRASRNQLQPVFEALDTLGSTKWRINKRVLSVIDRIWAGGGRLADLVDRD 548
Query: 549 DVPLPEKPDSEDETLLRKWKWDVRSLKKENMERHSQRCDIELKLAVARKMKDEEGFYYPH 608
D PLPE+PD+EDE L KW+W V+S+KKEN ERHSQRCDIELKLAVARKMKDEEGF+YPH
Sbjct: 549 DAPLPEEPDTEDEALRTKWRWKVKSVKKENRERHSQRCDIELKLAVARKMKDEEGFFYPH 608
Query: 609 NVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLRKSGLSWLKIHLANLFAGGVDKLSH 668
NVDFRGRAYPMHP+LNHLGSD+CRG+L FAEGRPL +SGL WLKIHLANLFAGGV+KLS
Sbjct: 609 NVDFRGRAYPMHPHLNHLGSDICRGVLVFAEGRPLGESGLRWLKIHLANLFAGGVEKLSL 668
Query: 669 EGRMTFVENHLEEIFDSADRPLEGRRWWLNAEDPFQFLAACMNLTEALRSSSPEAFISHI 728
EGR+ F ENH+++IFDSAD+PLEGRRWWLNAEDPFQ LA C+NL+EA+RSSSPE ISHI
Sbjct: 669 EGRIAFTENHMDDIFDSADKPLEGRRWWLNAEDPFQCLAVCINLSEAVRSSSPETSISHI 728
Query: 729 PIHQDGSCNGLQHYAALGRDELGAAAVNLVAGEKPADVYSGIAASIRTSNYAVVLMHESV 788
P+HQDGSCNGLQHYAALGRDELGAAAVNLVAGEKPADVYSGIAA
Sbjct: 729 PVHQDGSCNGLQHYAALGRDELGAAAVNLVAGEKPADVYSGIAA---------------- 788
Query: 789 GNIFMLHLNIASNYDDLNQVLEIMRRDAQKDPATFPDALRAKTLMEQVDRKLVKQTVMTS 848
+VL+IM+RDAQ+DPA FPDA+RA+ L+ QVDRKLVKQTVMTS
Sbjct: 789 ------------------RVLDIMKRDAQRDPAEFPDAVRARALVNQVDRKLVKQTVMTS 848
Query: 849 VYGVTYIGARDQIKRRLKERAAISDDSEIFGCSCYAAKTTLMALGEMFEAARGIMSWLGH 908
VYGVTYIGARDQIKRRLKER AI+DDSE+FG +CYAAK TL ALGEMFEAAR IM+WLG
Sbjct: 849 VYGVTYIGARDQIKRRLKERGAIADDSELFGAACYAAKVTLTALGEMFEAARSIMTWLGE 908
Query: 909 CAKIIASENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVLTRRQRTAFP 968
CAKIIASEN+PVRWTTPLGLPVVQPYRK+GRHLIKTSLQ+LTLQ+ET+KV+ +RQRTAFP
Sbjct: 909 CAKIIASENEPVRWTTPLGLPVVQPYRKIGRHLIKTSLQILTLQQETEKVMVKRQRTAFP 968
Query: 969 PNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYETPIL 1028
PNF+HSLDGSHMMMTAVAC++AGLNFAGVHDSYWTHACDVD++NRILREKFVELYETPIL
Sbjct: 969 PNFIHSLDGSHMMMTAVACRRAGLNFAGVHDSYWTHACDVDKLNRILREKFVELYETPIL 1005
Query: 1029 ENVRLSFLIFHFEHYEKQLPVCLIRVLPAK 1056
E + E ++ P L LP +
Sbjct: 1029 EKL--------LESFQTSYPTLLFPPLPER 1005
BLAST of Clc11G05420 vs. ExPASy Swiss-Prot
Match:
Q8L6J5 (DNA-directed RNA polymerase 1B, mitochondrial OS=Nicotiana tabacum OX=4097 GN=RPOT1-TOM PE=2 SV=2)
HSP 1 Score: 1302.7 bits (3370), Expect = 0.0e+00
Identity = 681/1019 (66.83%), Postives = 783/1019 (76.84%), Query Frame = 0
Query: 37 MWKTIAKQAISRN-RQFH----LDWHCFSRSHGVLGRPNESLFRKKLISSNFVLSSLPKF 96
MW+ I+K A SR R H L + +S S G RP + L + N LS F
Sbjct: 1 MWRYISKHAYSRKFRNSHDSALLGFSQYSSSFGKT-RPLQCLCEESTTHPNLGLSQNSIF 60
Query: 97 -----------GILE-------MGIGQNEFLSQEDYGNRFFIGSMGARIGLNGSCPKSYS 156
GI E +G+ QN S G+ G G+ G G +SY
Sbjct: 61 SRISRKVRHLEGICEESSKNPHLGLSQNSTFSSVK-GDFRICGKRGS--GSLGRL-RSYG 120
Query: 157 SVAEAVSSTDVDEDASVDDEIQELLEEMSKEEKRQRQVKYRRRRLKMVNGMGEGKKYQML 216
S AEA+ ST +ED DEIQEL+EEM KE + + + ++ K + GMG G KY L
Sbjct: 121 SAAEAIVSTS-EEDI---DEIQELIEEMDKENEALK-ANLQPKQPKTIGGMGVG-KYNFL 180
Query: 217 RRRQVTIETEAWEQAVKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAISQEQELI 276
RRRQ+ +ETEAWE+A KEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAI+ EQ+L
Sbjct: 181 RRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLC 240
Query: 277 RKGKNRTAYAPYFDQLPADMMSVITMHKLTGLLMMGHEHGSARVVQAACVIGDAIEQEVR 336
+GKNR AYAP+FDQLPA+MM+VITMHKL GLLM G GSARVVQAA IG+AIE E R
Sbjct: 241 DEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYIGEAIEHEAR 300
Query: 337 IHNFLEKMKKKKHDKDNENNDQLDSQMNEQERLRKKVTNLIKKQKLLAVRQIVKGTDDSR 396
IH FLEK KK + + + M E+ERLRKKV L+KKQKL VR+IVK DD +
Sbjct: 301 IHRFLEK-TKKSNALSGDLEETPGDMMKERERLRKKVKILMKKQKLRQVRKIVKQQDDEK 360
Query: 397 PWGKDTKAKVGSRLIELLTQTAYIQPPAEQLADGPPDIRPAFRHSFRTAMKEATKNCRRY 456
PWG+D KVG RLI++L +TAYIQPP +QL DGPPDIRPAF H+ +T E K RRY
Sbjct: 361 PWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTV--ETMKGSRRY 420
Query: 457 GVIECHPLVVKGLERTVKHMVIPYMPMLVPPVNWTGYDKGGHIFLPSFFMRTHGAKQQRD 516
GVI+C PLV KGL++T +HMVIPYMPMLVPP +W GYDKGG++FLPS+ MRTHGAKQQR+
Sbjct: 421 GVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQQRE 480
Query: 517 AVKRAPKQQLTPVFEALDTLGSTKWRINKKILSVVDRIWTSGGRLADLVDRDDVPLPEKP 576
AVKR PK+QL PVF+ALDTLG+TKWR+N+K+L +VDRIW SGGRLADLVDR+DVPLPE P
Sbjct: 481 AVKRVPKKQLEPVFQALDTLGNTKWRVNRKVLGIVDRIWASGGRLADLVDREDVPLPEAP 540
Query: 577 DSEDETLLRKWKWDVRSLKKENMERHSQRCDIELKLAVARKMKDEEGFYYPHNVDFRGRA 636
D+EDE +RKWKW V+ +KKEN ERHSQRCDIELKLAVARKMKDE+GFYYPHN+DFRGRA
Sbjct: 541 DTEDEAEIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRA 600
Query: 637 YPMHPYLNHLGSDLCRGILEFAEGRPLRKSGLSWLKIHLANLFAGGVDKLSHEGRMTFVE 696
YPMHPYLNHLGSDLCRGILEFAEGRPL SGL WLKIHLAN++ GGVDKLS+EGR+ F E
Sbjct: 601 YPMHPYLNHLGSDLCRGILEFAEGRPLGTSGLRWLKIHLANVYGGGVDKLSYEGRVAFSE 660
Query: 697 NHLEEIFDSADRPLEGRRWWLNAEDPFQFLAACMNLTEALRSSSPEAFISHIPIHQDGSC 756
NHLE+IFDSA+RPLEG+RWWL AEDPFQ LA C+N+ EALRS SPE IS++PIHQDGSC
Sbjct: 661 NHLEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSC 720
Query: 757 NGLQHYAALGRDELGAAAVNLVAGEKPADVYSGIAASIRTSNYAVVLMHESVGNIFMLHL 816
NGLQHYAALGRD+LGAAAVNLVAG+KPADVYSGIAA
Sbjct: 721 NGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAA------------------------ 780
Query: 817 NIASNYDDLNQVLEIMRRDAQKDPATFPDALRAKTLMEQVDRKLVKQTVMTSVYGVTYIG 876
+VL+IM+RDA KDPA P+ +RA+ L+ QVDRKLVKQTVMTSVYGVTYIG
Sbjct: 781 ----------RVLDIMKRDAAKDPANDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIG 840
Query: 877 ARDQIKRRLKERAAISDDSEIFGCSCYAAKTTLMALGEMFEAARGIMSWLGHCAKIIASE 936
ARDQIK+RLKER I DD+E+F +CYAAKTTL ALGEMFEAAR IMSWLG CAKIIA E
Sbjct: 841 ARDQIKKRLKERGVIEDDNELFAAACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIAME 900
Query: 937 NQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVLTRRQRTAFPPNFVHSLD 996
N PVRWTTPLGLPVVQPYRKLGRHLIKTSLQ+LTLQRETDKV+ +RQRTAFPPNFVHSLD
Sbjct: 901 NHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNFVHSLD 960
Query: 997 GSHMMMTAVACKKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYETPILENVRLSF 1033
GSHMMMTA+ACK++GL+FAGVHDSYWTHACDVD+MN+ILREKFVELY+ PILEN+ SF
Sbjct: 961 GSHMMMTAIACKESGLSFAGVHDSYWTHACDVDQMNKILREKFVELYDAPILENLLESF 971
BLAST of Clc11G05420 vs. ExPASy Swiss-Prot
Match:
Q93Y94 (DNA-directed RNA polymerase 1, mitochondrial OS=Nicotiana sylvestris OX=4096 GN=RPOT1 PE=2 SV=1)
HSP 1 Score: 1298.9 bits (3360), Expect = 0.0e+00
Identity = 680/1019 (66.73%), Postives = 786/1019 (77.13%), Query Frame = 0
Query: 37 MWKTIAKQAISRN-RQFH----LDWHCFSRSHGVLGRPNESLFRKKLISSNFVLSSLPKF 96
MW+ I+KQA SR R H L + +S S G RP + L + + N LS F
Sbjct: 1 MWRYISKQAYSRKFRNSHDSALLGFSQYSSSFGKT-RPLQCLCEESTTNPNLGLSQNSIF 60
Query: 97 -----------GILE-------MGIGQNEFLSQEDYGNRFFIGSMGARIGLNGSCPKSYS 156
GI E +G+ QN S G+ G G+ G G +SY
Sbjct: 61 SRISRKVRHLEGICEESSKNPHLGLSQNSLFSSVK-GDFRVCGKRGS--GSLGFL-RSYG 120
Query: 157 SVAEAVSSTDVDEDASVDDEIQELLEEMSKEEKRQRQVKYRRRRLKMVNGMGEGKKYQML 216
S AEA++ST +ED DEIQEL+EEM+KE + + + ++ K + GMG G KY +L
Sbjct: 121 SAAEAIASTS-EEDI---DEIQELIEEMNKENEALK-TNLQPKQPKTIGGMGVG-KYNLL 180
Query: 217 RRRQVTIETEAWEQAVKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAISQEQELI 276
RRRQ+ +ETEAWE+A KEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAI+ EQ+L
Sbjct: 181 RRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLC 240
Query: 277 RKGKNRTAYAPYFDQLPADMMSVITMHKLTGLLMMGHEHGSARVVQAACVIGDAIEQEVR 336
+GKNR AYAP+FDQLPA+MM+VITMHKL GLLM G GSARVVQAA IG+AIE E R
Sbjct: 241 DEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASHIGEAIEHEAR 300
Query: 337 IHNFLEKMKKKKHDKDNENNDQLDSQMNEQERLRKKVTNLIKKQKLLAVRQIVKGTDDSR 396
IH FLEK KK + + D M E+ER+RKKV L+KKQKL VR+IVK DD +
Sbjct: 301 IHRFLEK-TKKSNALSGDLEDTPGDIMKERERVRKKVKILMKKQKLQQVRKIVKQQDDEK 360
Query: 397 PWGKDTKAKVGSRLIELLTQTAYIQPPAEQLADGPPDIRPAFRHSFRTAMKEATKNCRRY 456
PWG+D KVG RLI++L +TAYIQPP +QL D PPDIRPAF H+ +T E K RRY
Sbjct: 361 PWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTV--ETMKGSRRY 420
Query: 457 GVIECHPLVVKGLERTVKHMVIPYMPMLVPPVNWTGYDKGGHIFLPSFFMRTHGAKQQRD 516
GVI+C PLV KGL++T +HMVIPYMPMLVPP +W GYDKG ++FLPS+ MRTHGAKQQR+
Sbjct: 421 GVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQQRE 480
Query: 517 AVKRAPKQQLTPVFEALDTLGSTKWRINKKILSVVDRIWTSGGRLADLVDRDDVPLPEKP 576
AVKR PK+QL PVF+ALDTLG+TKWR+N+K+L +VDRIW SGGRLADLVDR+DVPLPE+P
Sbjct: 481 AVKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADLVDREDVPLPEEP 540
Query: 577 DSEDETLLRKWKWDVRSLKKENMERHSQRCDIELKLAVARKMKDEEGFYYPHNVDFRGRA 636
D+EDE +RKWKW V+ +KKEN ERHSQRCDIELKLAVARKMKDE+GFYYPHN+DFRGRA
Sbjct: 541 DAEDEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRA 600
Query: 637 YPMHPYLNHLGSDLCRGILEFAEGRPLRKSGLSWLKIHLANLFAGGVDKLSHEGRMTFVE 696
YPMHPYLNHLGSDLCRGILEFAEGRPL KSGL WLKIHLAN++ GGVDKLS+EGR+ F E
Sbjct: 601 YPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVYGGGVDKLSYEGRVAFSE 660
Query: 697 NHLEEIFDSADRPLEGRRWWLNAEDPFQFLAACMNLTEALRSSSPEAFISHIPIHQDGSC 756
NH+E+IFDSA+RPLEG+RWWL AEDPFQ LA C+N+ EALRS SPE IS++PIHQDGSC
Sbjct: 661 NHVEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSC 720
Query: 757 NGLQHYAALGRDELGAAAVNLVAGEKPADVYSGIAASIRTSNYAVVLMHESVGNIFMLHL 816
NGLQHYAALGRD LGAAAVNLVAG+KPADVYSGIAA
Sbjct: 721 NGLQHYAALGRDTLGAAAVNLVAGDKPADVYSGIAA------------------------ 780
Query: 817 NIASNYDDLNQVLEIMRRDAQKDPATFPDALRAKTLMEQVDRKLVKQTVMTSVYGVTYIG 876
+VL+IM+RDA KDPA P+ +RA+ L+ QVDRKLVKQTVMTSVYGVTYIG
Sbjct: 781 ----------RVLDIMKRDAAKDPANDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIG 840
Query: 877 ARDQIKRRLKERAAISDDSEIFGCSCYAAKTTLMALGEMFEAARGIMSWLGHCAKIIASE 936
ARDQIKRRLKER I DD+E+F +CYAAKTTL ALGEMFEAAR IMSWLG CAKIIA E
Sbjct: 841 ARDQIKRRLKERGVIEDDNELFAAACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIAME 900
Query: 937 NQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVLTRRQRTAFPPNFVHSLD 996
N PVRWTTPLGLPVVQPYRKLGRHLIKTSLQ+LTLQRETDKV+ +RQRTAFPPNFVHSLD
Sbjct: 901 NHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNFVHSLD 960
Query: 997 GSHMMMTAVACKKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYETPILENVRLSF 1033
GSHMMMTA+ACK++GL+FAGVHDSYWTHA DVD+MN+ILREKFVELY+ PILEN+ SF
Sbjct: 961 GSHMMMTAIACKESGLSFAGVHDSYWTHASDVDQMNKILREKFVELYDAPILENLLESF 971
BLAST of Clc11G05420 vs. ExPASy Swiss-Prot
Match:
Q9LFV6 (DNA-directed RNA polymerase 2, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPOT2 PE=1 SV=1)
HSP 1 Score: 1241.5 bits (3211), Expect = 0.0e+00
Identity = 649/1030 (63.01%), Postives = 775/1030 (75.24%), Query Frame = 0
Query: 8 SNLTSKFDNFFLLQHPTNFHQNPSMISPSMWKTIAKQAISRNRQFHLDWHCFSRSHGVLG 67
+N T FD+ L P NP S MW+ IAKQAISR+ + S++ G+L
Sbjct: 11 ANQTKVFDHLIPLHKPFISSPNPVSQSFPMWRNIAKQAISRSA---ARLNVSSQTRGLLV 70
Query: 68 RPNESLFRKKLISSNFVLSSLPKFG---ILEMGIGQNEFLSQEDYGNRFFIGSMGARIGL 127
ES+F K L S F + P G GI + E S+ + L
Sbjct: 71 SSPESIFSKNL-SFRFPVLGSPCHGKGFRCLSGITRREEFSKSER-------------CL 130
Query: 128 NGSCPKSYSSVA-EAVSSTDVDEDASVDDEIQELLEEMSKEEKRQRQVKYRRRRLKMVNG 187
+G+ + Y+SVA E V STDV+E+ VD ELL+EM KE+KR+ +R R+K +
Sbjct: 131 SGTLARGYTSVAEEEVLSTDVEEEPEVD----ELLKEMKKEKKRE---SHRSWRMKKQDQ 190
Query: 188 MGEGK-KYQMLRRRQVTIETEAWEQAVKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPL 247
G G+ K+Q L RRQV IETE WE+A EY ELL DMCEQKLAPNLPY+KSLFLGWFEPL
Sbjct: 191 FGMGRTKFQNLWRRQVKIETEEWERAAAEYMELLTDMCEQKLAPNLPYVKSLFLGWFEPL 250
Query: 248 RDAISQEQELIRKGKNRTAYAPYFDQLPADMMSVITMHKLTGLLMMGHEHGSARVVQAAC 307
RDAI+++QEL R GK++ YA Y DQLPAD +SVITMHKL G LM G ++G +VV AAC
Sbjct: 251 RDAIAKDQELYRLGKSKATYAHYLDQLPADKISVITMHKLMGHLMTGGDNGCVKVVHAAC 310
Query: 308 VIGDAIEQEVRIHNFLEKMKKKKHDKDNENNDQLDSQMNEQERLRKKVTNLIKKQKLLAV 367
+GDAIEQE+RI FL+K KKK D + + ++ M EQ++LRKKV LIKKQKL AV
Sbjct: 311 TVGDAIEQEIRICTFLDK-KKKGDDNEESGGVENETSMKEQDKLRKKVNELIKKQKLSAV 370
Query: 368 RQIVKGTDDSRPWGKDTKAKVGSRLIELLTQTAYIQPPAEQLADGPPDIRPAFRHSFRTA 427
R+I++ D ++PW D +AKVGSRLIELL +TAYIQ PA+Q + PD+RPAF H+F+ A
Sbjct: 371 RKILQSHDYTKPWIADVRAKVGSRLIELLVRTAYIQSPADQQDNDLPDVRPAFVHTFKVA 430
Query: 428 MKEATKNCRRYGVIECHPLVVKGLERTVKHMVIPYMPMLVPPVNWTGYDKGGHIFLPSFF 487
K + + R+YGVIEC PLV KGLE++ ++ V+PYMPMLVPP+ W+GYDKG ++FL S+
Sbjct: 431 -KGSMNSGRKYGVIECDPLVRKGLEKSGRYAVMPYMPMLVPPLKWSGYDKGAYLFLTSYI 490
Query: 488 MRTHGAKQQRDAVKRAPKQQLTPVFEALDTLGSTKWRINKKILSVVDRIWTSGGRLADLV 547
M+THGAKQQR+A+K APK QL PVFEALDTLGSTKWR+NK++L+VVDRIW+SGG +AD+V
Sbjct: 491 MKTHGAKQQREALKSAPKGQLQPVFEALDTLGSTKWRVNKRVLTVVDRIWSSGGCVADMV 550
Query: 548 DRDDVPLPEKPDSEDETLLRKWKWDVRSLKKENMERHSQRCDIELKLAVARKMKDEEGFY 607
DR DVPLPEKPD+EDE +L+KWKW+V+S KK N ERHSQRCD ELKL+VARKMKDEE FY
Sbjct: 551 DRSDVPLPEKPDTEDEGILKKWKWEVKSAKKVNSERHSQRCDTELKLSVARKMKDEEAFY 610
Query: 608 YPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLRKSGLSWLKIHLANLFAGGVDK 667
YPHN+DFRGRAYPM P+LNHLGSDLCRG+LEFAEGRP+ SGL WLKIHLANL+AGGVDK
Sbjct: 611 YPHNMDFRGRAYPMPPHLNHLGSDLCRGVLEFAEGRPMGISGLRWLKIHLANLYAGGVDK 670
Query: 668 LSHEGRMTFVENHLEEIFDSADRPLEGRRWWLNAEDPFQFLAACMNLTEALRSSSPEAFI 727
LS +GR+ F ENHL++IFDSADRPLEG RWWL AEDPFQ LA C++LTEALRS SPE +
Sbjct: 671 LSLDGRLAFTENHLDDIFDSADRPLEGSRWWLQAEDPFQCLAVCISLTEALRSPSPETVL 730
Query: 728 SHIPIHQDGSCNGLQHYAALGRDELGAAAVNLVAGEKPADVYSGIAASIRTSNYAVVLMH 787
SHIPIHQDGSCNGLQHYAALGRD LGA AVNLVAGEKPADVYSGIA
Sbjct: 731 SHIPIHQDGSCNGLQHYAALGRDTLGAEAVNLVAGEKPADVYSGIA-------------- 790
Query: 788 ESVGNIFMLHLNIASNYDDLNQVLEIMRRDAQKDPATFPDALRAKTLMEQVDRKLVKQTV 847
+VL+IMRRDA +DP FP+ALRA+ L+ QVDRKLVKQTV
Sbjct: 791 --------------------TRVLDIMRRDADRDPEVFPEALRARKLLNQVDRKLVKQTV 850
Query: 848 MTSVYGVTYIGARDQIKRRLKERAAISDDSEIFGCSCYAAKTTLMALGEMFEAARGIMSW 907
MTSVYGVTYIGARDQIKRRLKER+ D+ E+FG +CYAAK TL A+ EMF+AAR IM W
Sbjct: 851 MTSVYGVTYIGARDQIKRRLKERSDFGDEKEVFGAACYAAKVTLAAIDEMFQAARAIMRW 910
Query: 908 LGHCAKIIASENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVLTRRQRT 967
G CAKIIASEN+ VRWTTPLGLPVVQPY ++G L+KTSLQ L+LQ ETD+V+ RRQRT
Sbjct: 911 FGECAKIIASENETVRWTTPLGLPVVQPYHQMGTKLVKTSLQTLSLQHETDQVIVRRQRT 970
Query: 968 AFPPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYET 1027
AFPPNF+HSLDGSHMMMTAVACK+AG+ FAGVHDS+WTHACDVD++N ILREKFVELY
Sbjct: 971 AFPPNFIHSLDGSHMMMTAVACKRAGVCFAGVHDSFWTHACDVDKLNIILREKFVELYSQ 980
Query: 1028 PILENVRLSF 1033
PILEN+ SF
Sbjct: 1031 PILENLLESF 980
BLAST of Clc11G05420 vs. ExPASy TrEMBL
Match:
A0A6J1JUF5 (DNA-directed RNA polymerase OS=Cucurbita maxima OX=3661 GN=LOC111489816 PE=3 SV=1)
HSP 1 Score: 1761.9 bits (4562), Expect = 0.0e+00
Identity = 881/1056 (83.43%), Postives = 941/1056 (89.11%), Query Frame = 0
Query: 1 MPFCQCSSNLTSKFDNFFLLQHPTNFHQNPSMISPSMWKTIAKQAISRNRQFHLDWHCFS 60
M FCQCS NLT KF+NF LLQ PTNFHQNP MIS SMWKTIAKQAIS+NRQFHLDWHC S
Sbjct: 1 MSFCQCSFNLTGKFENFLLLQQPTNFHQNPPMISTSMWKTIAKQAISKNRQFHLDWHCLS 60
Query: 61 RSHGVLGRPNESLFRKKLISSNFVLSSLPKFGILEMGIGQNEFLSQEDYGNRFFIGSMGA 120
RSHGV+GR NES+ R+KLIS FVLSSLPKFGI E+GIG++E LSQ+DYG+RF GSMG
Sbjct: 61 RSHGVMGRLNESIIREKLISDKFVLSSLPKFGISELGIGRSEVLSQDDYGSRFCFGSMGV 120
Query: 121 RIGLNGSCPKSYSSVAEAVSSTDVDEDASVDDEIQELLEEMSKEEKRQRQVKYRRRRLKM 180
RIGLNGSCPK YSSVAEAVSSTDVDED+S+D+EIQELL+EM KEEK RQV+ RRR LK
Sbjct: 121 RIGLNGSCPKGYSSVAEAVSSTDVDEDSSIDEEIQELLQEMRKEEK--RQVQRRRRGLKR 180
Query: 181 VNGMGEGKKYQMLRRRQVTIETEAWEQAVKEYQELLMDMCEQKLAPNLPYMKSLFLGWFE 240
V GMGE +KYQML+RRQV IETEAW+QAVKEY+ELLMDMCEQKLAPNLPYMKSLFLGWFE
Sbjct: 181 VKGMGE-EKYQMLKRRQVAIETEAWKQAVKEYKELLMDMCEQKLAPNLPYMKSLFLGWFE 240
Query: 241 PLRDAISQEQELIRKGKNRTAYAPYFDQLPADMMSVITMHKLTGLLMMGHEHGSARVVQA 300
PLRDAIS+EQELIR GKNRTAYAPYFDQL ADMMSV+TMHKL GLLMMGHEHG+ARVVQA
Sbjct: 241 PLRDAISKEQELIRIGKNRTAYAPYFDQLSADMMSVVTMHKLMGLLMMGHEHGNARVVQA 300
Query: 301 ACVIGDAIEQEVRIHNFLEKMKKKKHDKDNENNDQLDSQMNEQERLRKKVTNLIKKQKLL 360
ACVIGDAIEQEVRIH FLEKMKKKKHDKDNENND+ DSQ+ EQERLRKKVTNLIK QKL
Sbjct: 301 ACVIGDAIEQEVRIHRFLEKMKKKKHDKDNENNDKPDSQLKEQERLRKKVTNLIKMQKLP 360
Query: 361 AVRQIVKGTDDSRPWGKDTKAKVGSRLIELLTQTAYIQPPAEQLADGPPDIRPAFRHSFR 420
AVR IVKG DDS+PWG D KAKVGSRLIELLTQTAYIQPPA+QLADGPPDIRPAFRHSFR
Sbjct: 361 AVRHIVKGADDSKPWGPDAKAKVGSRLIELLTQTAYIQPPADQLADGPPDIRPAFRHSFR 420
Query: 421 TAMKEATKN-CRRYGVIECHPLVVKGLERTVKHMVIPYMPMLVPPVNWTGYDKGGHIFLP 480
MKEA KN RRYGVIEC PLVVKGLERT +HMVIPYMPMLVPPVNWTGYDKGGHIFLP
Sbjct: 421 IVMKEANKNSSRRYGVIECDPLVVKGLERTARHMVIPYMPMLVPPVNWTGYDKGGHIFLP 480
Query: 481 SFFMRTHGAKQQRDAVKRAPKQQLTPVFEALDTLGSTKWRINKKILSVVDRIWTSGGRLA 540
SF MRT GA QQR+AVKR PKQQLTPVFEALDTLG+TKWRINKKILS+VDRIWTSGG LA
Sbjct: 481 SFIMRTRGANQQREAVKRTPKQQLTPVFEALDTLGNTKWRINKKILSIVDRIWTSGGCLA 540
Query: 541 DLVDRDDVPLPEKPDSEDETLLRKWKWDVRSLKKENMERHSQRCDIELKLAVARKMKDEE 600
DLVDRDDVPLPEKPDSEDETLLRKWKW V+S+KKEN+ERHSQRCDIELKLAVARKMKDEE
Sbjct: 541 DLVDRDDVPLPEKPDSEDETLLRKWKWKVKSVKKENVERHSQRCDIELKLAVARKMKDEE 600
Query: 601 GFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLRKSGLSWLKIHLANLFAGG 660
GFY+PHN+DFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLRKSGL WLKIHLANLFAGG
Sbjct: 601 GFYFPHNIDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLRKSGLRWLKIHLANLFAGG 660
Query: 661 VDKLSHEGRMTFVENHLEEIFDSADRPLEGRRWWLNAEDPFQFLAACMNLTEALRSSSPE 720
VDKLSH+GR+TF+++H+E+IFDSADRPLEGRRWWLNAEDPFQFLA CMNLTEALRSSSPE
Sbjct: 661 VDKLSHDGRITFIDDHVEDIFDSADRPLEGRRWWLNAEDPFQFLAGCMNLTEALRSSSPE 720
Query: 721 AFISHIPIHQDGSCNGLQHYAALGRDELGAAAVNLVAGEKPADVYSGIAASIRTSNYAVV 780
ISHIPIHQDGSCNGLQHYAALGRD+LGAAAVNL EKPADVYSGIAA
Sbjct: 721 TVISHIPIHQDGSCNGLQHYAALGRDKLGAAAVNLTVTEKPADVYSGIAA---------- 780
Query: 781 LMHESVGNIFMLHLNIASNYDDLNQVLEIMRRDAQKDPATFPDALRAKTLMEQVDRKLVK 840
+VLEI+R+DAQ+DP TFPDALRAKTL++QVDRKLVK
Sbjct: 781 ------------------------RVLEIVRKDAQRDPETFPDALRAKTLIDQVDRKLVK 840
Query: 841 QTVMTSVYGVTYIGARDQIKRRLKERAAISDDSEIFGCSCYAAKTTLMALGEMFEAARGI 900
QTVMTSVYGVTYIGARDQIKRRLKERAAISDD+E+FGC+CYAAKTTL ALGEMFEAARGI
Sbjct: 841 QTVMTSVYGVTYIGARDQIKRRLKERAAISDDTELFGCACYAAKTTLTALGEMFEAARGI 900
Query: 901 MSWLGHCAKIIASENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVLTRR 960
MSWLG CAKIIASENQPVRWTTPLGLPVVQPYRKLGRHL+KTSLQVLTLQ+ETDKVL +R
Sbjct: 901 MSWLGDCAKIIASENQPVRWTTPLGLPVVQPYRKLGRHLVKTSLQVLTLQQETDKVLVKR 960
Query: 961 QRTAFPPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDVDEMNRILREKFVEL 1020
QRTAFPPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDVDEMNRILREKFVEL
Sbjct: 961 QRTAFPPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDVDEMNRILREKFVEL 1011
Query: 1021 YETPILENVRLSFLIFHFEHYEKQLPVCLIRVLPAK 1056
YETPILEN+ E +++ PV LP +
Sbjct: 1021 YETPILENL--------LEGFQQSFPVLDFPPLPER 1011
BLAST of Clc11G05420 vs. ExPASy TrEMBL
Match:
A0A6J1FHA8 (DNA-directed RNA polymerase OS=Cucurbita moschata OX=3662 GN=LOC111445458 PE=3 SV=1)
HSP 1 Score: 1749.2 bits (4529), Expect = 0.0e+00
Identity = 872/1033 (84.41%), Postives = 929/1033 (89.93%), Query Frame = 0
Query: 1 MPFCQCSSNLTSKFDNFFLLQHPTNFHQNPSMISPSMWKTIAKQAISRNRQFHLDWHCFS 60
M FCQCS NLT KF+NF LLQ PTNFHQNP MIS SMWKTIAKQAIS+NRQFHLDWHC S
Sbjct: 1 MSFCQCSFNLTGKFENFLLLQQPTNFHQNPPMISTSMWKTIAKQAISKNRQFHLDWHCLS 60
Query: 61 RSHGVLGRPNESLFRKKLISSNFVLSSLPKFGILEMGIGQNEFLSQEDYGNRFFIGSMGA 120
RSHGV+GR NES+ R+KLIS FVLSSLPKFGI E+GIG++E LSQEDYG+RF GSMG
Sbjct: 61 RSHGVMGRLNESIIREKLISDKFVLSSLPKFGISELGIGRSEVLSQEDYGSRFCFGSMGV 120
Query: 121 RIGLNGSCPKSYSSVAEAVSSTDVDEDASVDDEIQELLEEMSKEEKRQRQVKYRRRRLKM 180
RIGLNGS PK YSSVAEAVSSTDVDED+S D+EIQELL+EM KEEK RQV+ RRRRLK
Sbjct: 121 RIGLNGSIPKGYSSVAEAVSSTDVDEDSSSDEEIQELLQEMRKEEK--RQVQRRRRRLKW 180
Query: 181 VNGMGEGKKYQMLRRRQVTIETEAWEQAVKEYQELLMDMCEQKLAPNLPYMKSLFLGWFE 240
V GMGE +KYQML+RRQV IETEAW+QAVKEY+ELLMDMCEQKLAPNLPYMKSLFLGWFE
Sbjct: 181 VKGMGE-QKYQMLKRRQVAIETEAWKQAVKEYKELLMDMCEQKLAPNLPYMKSLFLGWFE 240
Query: 241 PLRDAISQEQELIRKGKNRTAYAPYFDQLPADMMSVITMHKLTGLLMMGHEHGSARVVQA 300
PLRDAIS+EQELIR GKNR AYAPYFDQL ADMMSV+TMHKL GLLMMGHEHG+ARVVQA
Sbjct: 241 PLRDAISKEQELIRIGKNRAAYAPYFDQLSADMMSVVTMHKLIGLLMMGHEHGNARVVQA 300
Query: 301 ACVIGDAIEQEVRIHNFLEKMKKKKHDKDNENNDQLDSQMNEQERLRKKVTNLIKKQKLL 360
AC IGDAIEQEVRIH FLEKMKKKKHDKDNENND+ DSQ+ EQE LRKKVTNLIKKQKL
Sbjct: 301 ACAIGDAIEQEVRIHRFLEKMKKKKHDKDNENNDKPDSQLKEQEWLRKKVTNLIKKQKLP 360
Query: 361 AVRQIVKGTDDSRPWGKDTKAKVGSRLIELLTQTAYIQPPAEQLADGPPDIRPAFRHSFR 420
AVR IVKG DDS+PWG D KAKVGSRLIELLTQTAYIQPPA+QLADGPPDIRPAFRHSFR
Sbjct: 361 AVRHIVKGADDSKPWGPDAKAKVGSRLIELLTQTAYIQPPADQLADGPPDIRPAFRHSFR 420
Query: 421 TAMKEATKN-CRRYGVIECHPLVVKGLERTVKHMVIPYMPMLVPPVNWTGYDKGGHIFLP 480
MKEA KN RRYGVIEC PLVVKGLE+T +HMVIPYMPMLVPPVNWTGYDKGGHIFLP
Sbjct: 421 IVMKEANKNSSRRYGVIECDPLVVKGLEKTARHMVIPYMPMLVPPVNWTGYDKGGHIFLP 480
Query: 481 SFFMRTHGAKQQRDAVKRAPKQQLTPVFEALDTLGSTKWRINKKILSVVDRIWTSGGRLA 540
SF MRT GA QQR+AVKR PKQQLTPVFEALDTLG+TKWRINKKILS+VDRIWTSGGRLA
Sbjct: 481 SFIMRTRGANQQREAVKRTPKQQLTPVFEALDTLGNTKWRINKKILSIVDRIWTSGGRLA 540
Query: 541 DLVDRDDVPLPEKPDSEDETLLRKWKWDVRSLKKENMERHSQRCDIELKLAVARKMKDEE 600
DLVDRDDVPLPEKPDSEDETLLRKWKW V+S+KKEN+ERHSQRCDIELKLAVA KMKDEE
Sbjct: 541 DLVDRDDVPLPEKPDSEDETLLRKWKWKVKSVKKENVERHSQRCDIELKLAVAHKMKDEE 600
Query: 601 GFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLRKSGLSWLKIHLANLFAGG 660
GFYYPHN+DFRGRAYPMHP+LNHLGSDLCRGILEFAEGRPL KSGL WLKIHLANLFAGG
Sbjct: 601 GFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLFAGG 660
Query: 661 VDKLSHEGRMTFVENHLEEIFDSADRPLEGRRWWLNAEDPFQFLAACMNLTEALRSSSPE 720
VDKLSH+GR+TF+++H+E+IFDSADRPLEGRRWWLNAEDPFQFLA CMNLTEALRSSSPE
Sbjct: 661 VDKLSHDGRITFIDDHVEDIFDSADRPLEGRRWWLNAEDPFQFLAGCMNLTEALRSSSPE 720
Query: 721 AFISHIPIHQDGSCNGLQHYAALGRDELGAAAVNLVAGEKPADVYSGIAASIRTSNYAVV 780
ISHIPIHQDGSCNGLQHYAALGRD+LGAAAVNL EKPADVYSGIAA
Sbjct: 721 TVISHIPIHQDGSCNGLQHYAALGRDKLGAAAVNLAVREKPADVYSGIAA---------- 780
Query: 781 LMHESVGNIFMLHLNIASNYDDLNQVLEIMRRDAQKDPATFPDALRAKTLMEQVDRKLVK 840
+VLEI+R+DAQ+DP TFPDALRAKTL++QVDRKLVK
Sbjct: 781 ------------------------RVLEIVRKDAQRDPETFPDALRAKTLIDQVDRKLVK 840
Query: 841 QTVMTSVYGVTYIGARDQIKRRLKERAAISDDSEIFGCSCYAAKTTLMALGEMFEAARGI 900
QTVMTSVYGVTYIGARDQIKRRLKERAAISDD+E+FGC+CYAAKTTL ALGEMFEAARGI
Sbjct: 841 QTVMTSVYGVTYIGARDQIKRRLKERAAISDDTELFGCACYAAKTTLTALGEMFEAARGI 900
Query: 901 MSWLGHCAKIIASENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVLTRR 960
MSWLG CAKIIASENQPVRWTTPLGLPVVQPYRKLG+HL+KTSLQVLTLQ+ETDKVL +R
Sbjct: 901 MSWLGDCAKIIASENQPVRWTTPLGLPVVQPYRKLGKHLVKTSLQVLTLQQETDKVLVKR 960
Query: 961 QRTAFPPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDVDEMNRILREKFVEL 1020
QRTAFPPNFVHSLDGSHMMMTAVACK+AGLNFAGVHDSYWTHACDVDEMNRILREKFVEL
Sbjct: 961 QRTAFPPNFVHSLDGSHMMMTAVACKRAGLNFAGVHDSYWTHACDVDEMNRILREKFVEL 996
Query: 1021 YETPILENVRLSF 1033
YETPILEN+ F
Sbjct: 1021 YETPILENLLEGF 996
BLAST of Clc11G05420 vs. ExPASy TrEMBL
Match:
A0A6J1C0Y4 (DNA-directed RNA polymerase OS=Momordica charantia OX=3673 GN=LOC111006419 PE=3 SV=1)
HSP 1 Score: 1720.7 bits (4455), Expect = 0.0e+00
Identity = 869/1058 (82.14%), Postives = 928/1058 (87.71%), Query Frame = 0
Query: 1 MPFCQCSSNLTSKFDNF--FLLQHPTNFHQNPSMISPSMWKTIAKQAISRNRQFHLDWHC 60
M FCQCSSNLTSKFD+ LQ PTNFH PSMIS S+WK IAKQAISRNR+F LDWH
Sbjct: 1 MSFCQCSSNLTSKFDHHHSLPLQKPTNFHLAPSMISTSVWKIIAKQAISRNRKFRLDWHS 60
Query: 61 FSRSHGVLGRPNESLFRKKLISSNFVLSSLPKFGILEMGIGQNEFLSQEDYGNRFFIGSM 120
FSRSHGVLGRP+ESLF +K +S + V SSLPKFG EM IG+NE LSQE YG+RF GS+
Sbjct: 61 FSRSHGVLGRPHESLFPEKFMSGSSVFSSLPKFGTWEMDIGRNEILSQEVYGSRFCFGSV 120
Query: 121 GARIGLNGSCPKSYSSVAEAVSSTDVDEDASVDDEIQELLEEMSKEEKRQRQVKYRRRRL 180
G RIGLNG CPK +SSVAEAVSSTDVDEDASVDDEIQELL+EM+KEEK RQV+YRRRR
Sbjct: 121 GTRIGLNGMCPKGFSSVAEAVSSTDVDEDASVDDEIQELLQEMTKEEK--RQVEYRRRRQ 180
Query: 181 KMVNGMGEGKKYQMLRRRQVTIETEAWEQAVKEYQELLMDMCEQKLAPNLPYMKSLFLGW 240
KM GMG+G KYQML+RRQV IETEAWE AVKEY+ELLMDMCEQKLAPNLPYMKSLFLGW
Sbjct: 181 KMAKGMGQG-KYQMLKRRQVKIETEAWELAVKEYKELLMDMCEQKLAPNLPYMKSLFLGW 240
Query: 241 FEPLRDAISQEQELIRKGKNRTAYAPYFDQLPADMMSVITMHKLTGLLMMGHEHGSARVV 300
FEPLRDAI +EQELIR+GKNRTAYAPYFD+LPADMMSVITMHKL GLLMMGHEHG+ARVV
Sbjct: 241 FEPLRDAIIKEQELIREGKNRTAYAPYFDRLPADMMSVITMHKLMGLLMMGHEHGNARVV 300
Query: 301 QAACVIGDAIEQEVRIHNFLEKMKKKKHDKDNENNDQLDSQMNEQERLRKKVTNLIKKQK 360
QAACVIGDAIEQE+RIHNFLEKMKKKKHDKD ENND+ DS + EQE+LRKKVTNLIKKQK
Sbjct: 301 QAACVIGDAIEQEIRIHNFLEKMKKKKHDKDGENNDKPDSLIKEQEKLRKKVTNLIKKQK 360
Query: 361 LLAVRQIVKGTDDSRPWGKDTKAKVGSRLIELLTQTAYIQPPAEQLADGPPDIRPAFRHS 420
L AVRQIVKG DDS+PWG+D KAKVGSRLIELLTQTAYIQPPA+QLADGPPDIRPAFRHS
Sbjct: 361 LPAVRQIVKGADDSKPWGQDAKAKVGSRLIELLTQTAYIQPPADQLADGPPDIRPAFRHS 420
Query: 421 FRTAMKEATKN-CRRYGVIECHPLVVKGLERTVKHMVIPYMPMLVPPVNWTGYDKGGHIF 480
FRT MKEA KN RRYGVIEC PLVVKGLERT +HMVIPYMPMLVPPVNWTGYDKGGHIF
Sbjct: 421 FRTVMKEANKNSSRRYGVIECDPLVVKGLERTARHMVIPYMPMLVPPVNWTGYDKGGHIF 480
Query: 481 LPSFFMRTHGAKQQRDAVKRAPKQQLTPVFEALDTLGSTKWRINKKILSVVDRIWTSGGR 540
LPSF MRTHGAKQQRDAVKR PKQQLTPVFEALDTLG+TKWRINK+ILSVVDRIWT GGR
Sbjct: 481 LPSFVMRTHGAKQQRDAVKRTPKQQLTPVFEALDTLGNTKWRINKRILSVVDRIWTGGGR 540
Query: 541 LADLVDRDDVPLPEKPDSEDETLLRKWKWDVRSLKKENMERHSQRCDIELKLAVARKMKD 600
LADLVDRDDVPLPEKPDSEDETLLRKWKW V+S+KKENMERHSQRCDIELKLAVARKMKD
Sbjct: 541 LADLVDRDDVPLPEKPDSEDETLLRKWKWKVKSVKKENMERHSQRCDIELKLAVARKMKD 600
Query: 601 EEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLRKSGLSWLKIHLANLFA 660
EEGFYYPHN+DFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLRKSGL+WLKIHLANLFA
Sbjct: 601 EEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLRKSGLNWLKIHLANLFA 660
Query: 661 GGVDKLSHEGRMTFVENHLEEIFDSADRPLEGRRWWLNAEDPFQFLAACMNLTEALRSSS 720
GGVDKLSH+GRMTF+ENHLE+IFDSADRPLEGRRWWLNAEDPFQFLAACMNLTEALRS S
Sbjct: 661 GGVDKLSHDGRMTFIENHLEDIFDSADRPLEGRRWWLNAEDPFQFLAACMNLTEALRSFS 720
Query: 721 PEAFISHIPIHQDGSCNGLQHYAALGRDELGAAAVNLVAGEKPADVYSGIAASIRTSNYA 780
PE FISHIP+HQDGSCNGLQHYAALGRD+LGA AVNLV GEKPADVY+GIAA
Sbjct: 721 PETFISHIPVHQDGSCNGLQHYAALGRDKLGATAVNLVTGEKPADVYTGIAA-------- 780
Query: 781 VVLMHESVGNIFMLHLNIASNYDDLNQVLEIMRRDAQKDPATFPDALRAKTLMEQVDRKL 840
+VLEIM+RDAQ+DPA FPDALRAK L++QVDRKL
Sbjct: 781 --------------------------RVLEIMQRDAQRDPAIFPDALRAKRLIDQVDRKL 840
Query: 841 VKQTVMTSVYGVTYIGARDQIKRRLKERAAISDDSEIFGCSCYAAKTTLMALGEMFEAAR 900
VKQTVMTSVYGVTYIGARDQIKRRLKERA+IS + + + + TL ALGEMFEAAR
Sbjct: 841 VKQTVMTSVYGVTYIGARDQIKRRLKERASISXXXXVMSSNIMSEQITLTALGEMFEAAR 900
Query: 901 GIMSWLGHCAKIIASENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVLT 960
GIM+WLG CAKIIASENQPVRWTTPLGLPVVQPYR LGRHLIKTSLQVLTLQRETDKVL
Sbjct: 901 GIMNWLGDCAKIIASENQPVRWTTPLGLPVVQPYRVLGRHLIKTSLQVLTLQRETDKVLA 960
Query: 961 RRQRTAFPPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDVDEMNRILREKFV 1020
+RQRTAFPPNFVHSLDGSHMMMTAVACKKAGL+FAGVHDSYWTHACDVDEMNRILREKFV
Sbjct: 961 KRQRTAFPPNFVHSLDGSHMMMTAVACKKAGLSFAGVHDSYWTHACDVDEMNRILREKFV 1013
Query: 1021 ELYETPILENVRLSFLIFHFEHYEKQLPVCLIRVLPAK 1056
ELYE PILEN+ E +++ P LP +
Sbjct: 1021 ELYEMPILENL--------LEGFQRSFPTLNFPPLPER 1013
BLAST of Clc11G05420 vs. ExPASy TrEMBL
Match:
A0A0A0KXM5 (DNA-directed RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_5G642180 PE=3 SV=1)
HSP 1 Score: 1563.1 bits (4046), Expect = 0.0e+00
Identity = 790/1003 (78.76%), Postives = 858/1003 (85.54%), Query Frame = 0
Query: 32 MISPSMWKTIAKQAISRNRQFHLDWHCFSRSHGVLGRPNESLFRKKLISSNFVLSSLPKF 91
MIS SMWKTIAK+ I RNRQFH DW SR +GVLGRPNESLFR KLIS NFV SSLPKF
Sbjct: 1 MISTSMWKTIAKRGICRNRQFHPDWRWLSRFNGVLGRPNESLFRDKLISGNFVPSSLPKF 60
Query: 92 GILEMGIGQNEFLSQED-YGNRFFIGSMGARIGLNGSCPKSYSSVAEAVSSTDVDEDASV 151
G EMG+G++E LSQED Y +RF GSMGARIGLNG CPK YSSVAEAVSSTDVDEDASV
Sbjct: 61 GSFEMGVGRSEILSQEDYYRSRFCFGSMGARIGLNGLCPKGYSSVAEAVSSTDVDEDASV 120
Query: 152 DDEIQELLEEMSKEEKRQRQVKYRRRRLKMVNGMGEGKKYQMLRRRQVTIETEAWEQAVK 211
D ++QE ++EMSKEEK RLK V GMG+ KY MLRRRQVTIE EAWE A K
Sbjct: 121 DGKVQESVQEMSKEEK----------RLKPVKGMGQW-KYNMLRRRQVTIEAEAWENAAK 180
Query: 212 EYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAISQEQELIRKGK-NRTAYAPYFDQL 271
EY+ELL+DMC+QKLAPNLPY+KSLFLGWFEP +DAI +EQELI++GK +R YAPYF QL
Sbjct: 181 EYRELLVDMCKQKLAPNLPYVKSLFLGWFEPFQDAIIKEQELIQEGKRSRAPYAPYFLQL 240
Query: 272 PADMMSVITMHKLTGLLMMGHEHGSARVVQAACVIGDAIEQEVRIHNFLEKMKKKKHDKD 331
PAD MSVITMHKL GLLM G EHGS RVVQAAC IGDAIEQEVRIH FLEK K++ H+KD
Sbjct: 241 PADKMSVITMHKLMGLLMRGSEHGSVRVVQAACAIGDAIEQEVRIHKFLEKKKERTHNKD 300
Query: 332 NENNDQLDSQMNEQERLRKKVTNLIKKQKLLAVRQIVKGTDDSRPWGKDTKAKVGSRLIE 391
NENNDQ D + EQERLRKKVTNLIKK+K LA QI K DDSRPWG++ KAKVG+RLIE
Sbjct: 301 NENNDQPDIERKEQERLRKKVTNLIKKKKHLAAGQIAKRADDSRPWGRELKAKVGARLIE 360
Query: 392 LLTQTAYIQPPAEQLADGPPDIRPAFRHSFRTAMKEATKNCRRYGVIECHPLVVKGLERT 451
LL QTAYIQPPA+QLADGPPD RPAF HS +T++K+ T R GVIEC PLVVKGL+ T
Sbjct: 361 LLIQTAYIQPPADQLADGPPDPRPAFVHSLKTSVKDGTNFMGRLGVIECDPLVVKGLDWT 420
Query: 452 VKHMVIPYMPMLVPPVNWTGYDKGGHIFLPSFFMRTHGAKQQRDAVKRAPKQQLTPVFEA 511
+ +VIPYMPML+PPV W GYDKGGHI LPSF MRTHGAKQQRDA KR PKQQLTPVFEA
Sbjct: 421 ARQIVIPYMPMLMPPVKWRGYDKGGHILLPSFAMRTHGAKQQRDAFKRTPKQQLTPVFEA 480
Query: 512 LDTLGSTKWRINKKILSVVDRIWTSGGRLADLVDRDDVPLPEKPDSEDETLLRKWKWDVR 571
LDTLG+TKWRINK+IL+VV+RIWTSGG LA LVD+DDVPLPEKPD+EDETL++KWKW+VR
Sbjct: 481 LDTLGNTKWRINKRILNVVERIWTSGGHLAGLVDQDDVPLPEKPDTEDETLIKKWKWEVR 540
Query: 572 SLKKENMERHSQRCDIELKLAVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCR 631
S+KKENMERHSQRCDIELKL VARKMKDEEGFYYPHNVDFRGRAYPMHP+LNHLGSDLCR
Sbjct: 541 SVKKENMERHSQRCDIELKLTVARKMKDEEGFYYPHNVDFRGRAYPMHPHLNHLGSDLCR 600
Query: 632 GILEFAEGRPLRKSGLSWLKIHLANLFAGGVDKLSHEGRMTFVENHLEEIFDSADRPLEG 691
GILEFAEGR LRKSGL WLKIHLANLFAGGVDKLSH+GRMTF+ENHLE+IFDSADRPLEG
Sbjct: 601 GILEFAEGRSLRKSGLIWLKIHLANLFAGGVDKLSHDGRMTFIENHLEDIFDSADRPLEG 660
Query: 692 RRWWLNAEDPFQFLAACMNLTEALRSSSPEAFISHIPIHQDGSCNGLQHYAALGRDELGA 751
RWW+NAEDPFQFLA CMNLTEALRSSSPE +ISHIPIHQDGSCNGLQHYAALGRD+ GA
Sbjct: 661 GRWWMNAEDPFQFLAGCMNLTEALRSSSPETYISHIPIHQDGSCNGLQHYAALGRDKSGA 720
Query: 752 AAVNLVAGEKPADVYSGIAASIRTSNYAVVLMHESVGNIFMLHLNIASNYDDLNQVLEIM 811
AAVNLVAGEKPADVYSGIAA +VLEI+
Sbjct: 721 AAVNLVAGEKPADVYSGIAA----------------------------------RVLEIL 780
Query: 812 RRDAQKDPATFPDALRAKTLMEQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERAAIS 871
+RDAQKDP TFPDAL AK L++QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERAAIS
Sbjct: 781 KRDAQKDPETFPDALHAKILIDQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERAAIS 840
Query: 872 DDSEIFGCSCYAAKTTLMALGEMFEAARGIMSWLGHCAKIIASENQPVRWTTPLGLPVVQ 931
DDSE+FGCSCYAAK TL ALGEMF AAR IM+WL CAKIIAS+N+ VRWTTPLGLPVVQ
Sbjct: 841 DDSELFGCSCYAAKITLEALGEMFVAAREIMNWLSDCAKIIASKNETVRWTTPLGLPVVQ 900
Query: 932 PYRKLGRHLIKTSLQVLTLQRETDKVLTRRQRTAFPPNFVHSLDGSHMMMTAVACKKAGL 991
PYRKLG H IKTSLQVLTL+RETDK+L+ RQRTAFPPNFVHSLD SHMMMTAVACK+AGL
Sbjct: 901 PYRKLGIHAIKTSLQVLTLRRETDKILSSRQRTAFPPNFVHSLDSSHMMMTAVACKRAGL 958
Query: 992 NFAGVHDSYWTHACDVDEMNRILREKFVELYETPILENVRLSF 1033
NFAGVHDSYWTHACDVDEMNRILREKFVELYETPILEN+ SF
Sbjct: 961 NFAGVHDSYWTHACDVDEMNRILREKFVELYETPILENLLESF 958
BLAST of Clc11G05420 vs. ExPASy TrEMBL
Match:
A0A1S3CBC4 (DNA-directed RNA polymerase OS=Cucumis melo OX=3656 GN=LOC103498556 PE=3 SV=1)
HSP 1 Score: 1546.9 bits (4004), Expect = 0.0e+00
Identity = 780/1003 (77.77%), Postives = 857/1003 (85.44%), Query Frame = 0
Query: 32 MISPSMWKTIAKQAISRNRQFHLDWHCFSRSHGVLGRPNESLFRKKLISSNFVLSSLPKF 91
MIS SMWKTIAK+ I RNRQFH DW CFSR +GVLGRPNESLFR KLIS N V SSLPKF
Sbjct: 1 MISTSMWKTIAKRGICRNRQFHPDWRCFSRFNGVLGRPNESLFRDKLISGNLVPSSLPKF 60
Query: 92 GILEMGIGQNEFLSQED-YGNRFFIGSMGARIGLNGSCPKSYSSVAEAVSSTDVDEDASV 151
G +MG+G+N+ LSQED Y +RF GSMGARIGLNG CPK YSSVAEAVSSTDVDEDAS+
Sbjct: 61 GFFQMGVGRNQILSQEDYYRSRFCFGSMGARIGLNGLCPKGYSSVAEAVSSTDVDEDASL 120
Query: 152 DDEIQELLEEMSKEEKRQRQVKYRRRRLKMVNGMGEGKKYQMLRRRQVTIETEAWEQAVK 211
D E+QELL+EMSKEE RLK V GM KY MLRRRQVT+E EAWE+AVK
Sbjct: 121 DGEVQELLQEMSKEE----------TRLKTVKGMPH-SKYLMLRRRQVTVEAEAWEKAVK 180
Query: 212 EYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAISQEQELIRKGKN-RTAYAPYFDQL 271
EY+ELL DMC+QKLAPNLPY+KSLFLGWFEP ++AI++EQELI+KGK R YAPYF QL
Sbjct: 181 EYKELLEDMCKQKLAPNLPYVKSLFLGWFEPFQEAINKEQELIQKGKKPRAPYAPYFVQL 240
Query: 272 PADMMSVITMHKLTGLLMMGHEHGSARVVQAACVIGDAIEQEVRIHNFLEKMKKKKHDKD 331
PAD MSVITMHKL G+LM G EHG+ +VV AAC IGDAIEQEVRIH FLEK K+KKH+K+
Sbjct: 241 PADKMSVITMHKLMGMLMKGCEHGNIKVVVAACAIGDAIEQEVRIHKFLEKKKEKKHNKN 300
Query: 332 NENNDQLDSQMNEQERLRKKVTNLIKKQKLLAVRQIVKGTDDSRPWGKDTKAKVGSRLIE 391
NENN Q DSQ+ EQERLRK V NLIKK+K AV QI KGTDDSRPWG++ KAKVG+RLIE
Sbjct: 301 NENNYQPDSQVKEQERLRKTVANLIKKKKHQAVGQIAKGTDDSRPWGREAKAKVGARLIE 360
Query: 392 LLTQTAYIQPPAEQLADGPPDIRPAFRHSFRTAMKEATKNCRRYGVIECHPLVVKGLERT 451
LL QTAYIQPPA+QLADGPPDIRPAF HS +T + + + R GVIEC PLV+KGL+RT
Sbjct: 361 LLIQTAYIQPPADQLADGPPDIRPAFWHSLKTVVTD--NSVGRLGVIECDPLVIKGLDRT 420
Query: 452 VKHMVIPYMPMLVPPVNWTGYDKGGHIFLPSFFMRTHGAKQQRDAVKRAPKQQLTPVFEA 511
+ +VIPYMPML+PPV W GYDKGGHI LPSF MRTHGAKQQRDA KR PK+QLTPVF+A
Sbjct: 421 ARQIVIPYMPMLMPPVKWRGYDKGGHILLPSFAMRTHGAKQQRDAFKRTPKEQLTPVFQA 480
Query: 512 LDTLGSTKWRINKKILSVVDRIWTSGGRLADLVDRDDVPLPEKPDSEDETLLRKWKWDVR 571
LDTLG+TKWRINK+IL VV+RIW+SGG LA LV+RDDVPLPEKPD+EDETL++KWKW++R
Sbjct: 481 LDTLGNTKWRINKRILGVVERIWSSGGDLAGLVNRDDVPLPEKPDTEDETLIKKWKWEIR 540
Query: 572 SLKKENMERHSQRCDIELKLAVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCR 631
S+KKENMERHSQRCDIELKLAVAR MKDEEGFYYPHNVDFRGRAYPMHP+LNHLGSDLCR
Sbjct: 541 SVKKENMERHSQRCDIELKLAVARNMKDEEGFYYPHNVDFRGRAYPMHPHLNHLGSDLCR 600
Query: 632 GILEFAEGRPLRKSGLSWLKIHLANLFAGGVDKLSHEGRMTFVENHLEEIFDSADRPLEG 691
GILEFAEGRPLRKSGLSWLKIHLANLFAGGVDKLSH+GRMTFVENHLE+IFDSAD+PL G
Sbjct: 601 GILEFAEGRPLRKSGLSWLKIHLANLFAGGVDKLSHDGRMTFVENHLEDIFDSADKPLGG 660
Query: 692 RRWWLNAEDPFQFLAACMNLTEALRSSSPEAFISHIPIHQDGSCNGLQHYAALGRDELGA 751
RRWWLNAEDPFQFLA CMNLTEALRSSSPE +ISHIPIHQDGSCNGLQHYAALGRD+LGA
Sbjct: 661 RRWWLNAEDPFQFLAGCMNLTEALRSSSPETYISHIPIHQDGSCNGLQHYAALGRDKLGA 720
Query: 752 AAVNLVAGEKPADVYSGIAASIRTSNYAVVLMHESVGNIFMLHLNIASNYDDLNQVLEIM 811
A+VNLVAGEKPADVYSGIAA +V EI+
Sbjct: 721 ASVNLVAGEKPADVYSGIAA----------------------------------RVQEIL 780
Query: 812 RRDAQKDPATFPDALRAKTLMEQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERAAIS 871
RRDAQKDP TFPDA+ AK L++QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERAAIS
Sbjct: 781 RRDAQKDPETFPDAMYAKKLIDQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERAAIS 840
Query: 872 DDSEIFGCSCYAAKTTLMALGEMFEAARGIMSWLGHCAKIIASENQPVRWTTPLGLPVVQ 931
DDSE+FGCSCYAAK TL ALGEMF AAR IM+WL CAKIIAS+N+ VRWTTPLGLPVVQ
Sbjct: 841 DDSELFGCSCYAAKMTLEALGEMFVAAREIMNWLSDCAKIIASKNESVRWTTPLGLPVVQ 900
Query: 932 PYRKLGRHLIKTSLQVLTLQRETDKVLTRRQRTAFPPNFVHSLDGSHMMMTAVACKKAGL 991
PYRKLG IKTSLQVLTL+RETDK+LT RQRTAFPPNFVHSLD SHMMMTA+AC +AGL
Sbjct: 901 PYRKLGALSIKTSLQVLTLRRETDKILTSRQRTAFPPNFVHSLDSSHMMMTAIACNRAGL 956
Query: 992 NFAGVHDSYWTHACDVDEMNRILREKFVELYETPILENVRLSF 1033
FAGVHDSYWTHACDVDEMNRILR+KFVELYETPILE++ SF
Sbjct: 961 TFAGVHDSYWTHACDVDEMNRILRQKFVELYETPILEDLLESF 956
BLAST of Clc11G05420 vs. TAIR 10
Match:
AT5G15700.1 (DNA/RNA polymerases superfamily protein )
HSP 1 Score: 1241.5 bits (3211), Expect = 0.0e+00
Identity = 649/1030 (63.01%), Postives = 775/1030 (75.24%), Query Frame = 0
Query: 8 SNLTSKFDNFFLLQHPTNFHQNPSMISPSMWKTIAKQAISRNRQFHLDWHCFSRSHGVLG 67
+N T FD+ L P NP S MW+ IAKQAISR+ + S++ G+L
Sbjct: 11 ANQTKVFDHLIPLHKPFISSPNPVSQSFPMWRNIAKQAISRSA---ARLNVSSQTRGLLV 70
Query: 68 RPNESLFRKKLISSNFVLSSLPKFG---ILEMGIGQNEFLSQEDYGNRFFIGSMGARIGL 127
ES+F K L S F + P G GI + E S+ + L
Sbjct: 71 SSPESIFSKNL-SFRFPVLGSPCHGKGFRCLSGITRREEFSKSER-------------CL 130
Query: 128 NGSCPKSYSSVA-EAVSSTDVDEDASVDDEIQELLEEMSKEEKRQRQVKYRRRRLKMVNG 187
+G+ + Y+SVA E V STDV+E+ VD ELL+EM KE+KR+ +R R+K +
Sbjct: 131 SGTLARGYTSVAEEEVLSTDVEEEPEVD----ELLKEMKKEKKRE---SHRSWRMKKQDQ 190
Query: 188 MGEGK-KYQMLRRRQVTIETEAWEQAVKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPL 247
G G+ K+Q L RRQV IETE WE+A EY ELL DMCEQKLAPNLPY+KSLFLGWFEPL
Sbjct: 191 FGMGRTKFQNLWRRQVKIETEEWERAAAEYMELLTDMCEQKLAPNLPYVKSLFLGWFEPL 250
Query: 248 RDAISQEQELIRKGKNRTAYAPYFDQLPADMMSVITMHKLTGLLMMGHEHGSARVVQAAC 307
RDAI+++QEL R GK++ YA Y DQLPAD +SVITMHKL G LM G ++G +VV AAC
Sbjct: 251 RDAIAKDQELYRLGKSKATYAHYLDQLPADKISVITMHKLMGHLMTGGDNGCVKVVHAAC 310
Query: 308 VIGDAIEQEVRIHNFLEKMKKKKHDKDNENNDQLDSQMNEQERLRKKVTNLIKKQKLLAV 367
+GDAIEQE+RI FL+K KKK D + + ++ M EQ++LRKKV LIKKQKL AV
Sbjct: 311 TVGDAIEQEIRICTFLDK-KKKGDDNEESGGVENETSMKEQDKLRKKVNELIKKQKLSAV 370
Query: 368 RQIVKGTDDSRPWGKDTKAKVGSRLIELLTQTAYIQPPAEQLADGPPDIRPAFRHSFRTA 427
R+I++ D ++PW D +AKVGSRLIELL +TAYIQ PA+Q + PD+RPAF H+F+ A
Sbjct: 371 RKILQSHDYTKPWIADVRAKVGSRLIELLVRTAYIQSPADQQDNDLPDVRPAFVHTFKVA 430
Query: 428 MKEATKNCRRYGVIECHPLVVKGLERTVKHMVIPYMPMLVPPVNWTGYDKGGHIFLPSFF 487
K + + R+YGVIEC PLV KGLE++ ++ V+PYMPMLVPP+ W+GYDKG ++FL S+
Sbjct: 431 -KGSMNSGRKYGVIECDPLVRKGLEKSGRYAVMPYMPMLVPPLKWSGYDKGAYLFLTSYI 490
Query: 488 MRTHGAKQQRDAVKRAPKQQLTPVFEALDTLGSTKWRINKKILSVVDRIWTSGGRLADLV 547
M+THGAKQQR+A+K APK QL PVFEALDTLGSTKWR+NK++L+VVDRIW+SGG +AD+V
Sbjct: 491 MKTHGAKQQREALKSAPKGQLQPVFEALDTLGSTKWRVNKRVLTVVDRIWSSGGCVADMV 550
Query: 548 DRDDVPLPEKPDSEDETLLRKWKWDVRSLKKENMERHSQRCDIELKLAVARKMKDEEGFY 607
DR DVPLPEKPD+EDE +L+KWKW+V+S KK N ERHSQRCD ELKL+VARKMKDEE FY
Sbjct: 551 DRSDVPLPEKPDTEDEGILKKWKWEVKSAKKVNSERHSQRCDTELKLSVARKMKDEEAFY 610
Query: 608 YPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLRKSGLSWLKIHLANLFAGGVDK 667
YPHN+DFRGRAYPM P+LNHLGSDLCRG+LEFAEGRP+ SGL WLKIHLANL+AGGVDK
Sbjct: 611 YPHNMDFRGRAYPMPPHLNHLGSDLCRGVLEFAEGRPMGISGLRWLKIHLANLYAGGVDK 670
Query: 668 LSHEGRMTFVENHLEEIFDSADRPLEGRRWWLNAEDPFQFLAACMNLTEALRSSSPEAFI 727
LS +GR+ F ENHL++IFDSADRPLEG RWWL AEDPFQ LA C++LTEALRS SPE +
Sbjct: 671 LSLDGRLAFTENHLDDIFDSADRPLEGSRWWLQAEDPFQCLAVCISLTEALRSPSPETVL 730
Query: 728 SHIPIHQDGSCNGLQHYAALGRDELGAAAVNLVAGEKPADVYSGIAASIRTSNYAVVLMH 787
SHIPIHQDGSCNGLQHYAALGRD LGA AVNLVAGEKPADVYSGIA
Sbjct: 731 SHIPIHQDGSCNGLQHYAALGRDTLGAEAVNLVAGEKPADVYSGIA-------------- 790
Query: 788 ESVGNIFMLHLNIASNYDDLNQVLEIMRRDAQKDPATFPDALRAKTLMEQVDRKLVKQTV 847
+VL+IMRRDA +DP FP+ALRA+ L+ QVDRKLVKQTV
Sbjct: 791 --------------------TRVLDIMRRDADRDPEVFPEALRARKLLNQVDRKLVKQTV 850
Query: 848 MTSVYGVTYIGARDQIKRRLKERAAISDDSEIFGCSCYAAKTTLMALGEMFEAARGIMSW 907
MTSVYGVTYIGARDQIKRRLKER+ D+ E+FG +CYAAK TL A+ EMF+AAR IM W
Sbjct: 851 MTSVYGVTYIGARDQIKRRLKERSDFGDEKEVFGAACYAAKVTLAAIDEMFQAARAIMRW 910
Query: 908 LGHCAKIIASENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVLTRRQRT 967
G CAKIIASEN+ VRWTTPLGLPVVQPY ++G L+KTSLQ L+LQ ETD+V+ RRQRT
Sbjct: 911 FGECAKIIASENETVRWTTPLGLPVVQPYHQMGTKLVKTSLQTLSLQHETDQVIVRRQRT 970
Query: 968 AFPPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYET 1027
AFPPNF+HSLDGSHMMMTAVACK+AG+ FAGVHDS+WTHACDVD++N ILREKFVELY
Sbjct: 971 AFPPNFIHSLDGSHMMMTAVACKRAGVCFAGVHDSFWTHACDVDKLNIILREKFVELYSQ 980
Query: 1028 PILENVRLSF 1033
PILEN+ SF
Sbjct: 1031 PILENLLESF 980
BLAST of Clc11G05420 vs. TAIR 10
Match:
AT5G15700.2 (DNA/RNA polymerases superfamily protein )
HSP 1 Score: 1241.5 bits (3211), Expect = 0.0e+00
Identity = 649/1030 (63.01%), Postives = 775/1030 (75.24%), Query Frame = 0
Query: 8 SNLTSKFDNFFLLQHPTNFHQNPSMISPSMWKTIAKQAISRNRQFHLDWHCFSRSHGVLG 67
+N T FD+ L P NP S MW+ IAKQAISR+ + S++ G+L
Sbjct: 11 ANQTKVFDHLIPLHKPFISSPNPVSQSFPMWRNIAKQAISRSA---ARLNVSSQTRGLLV 70
Query: 68 RPNESLFRKKLISSNFVLSSLPKFG---ILEMGIGQNEFLSQEDYGNRFFIGSMGARIGL 127
ES+F K L S F + P G GI + E S+ + L
Sbjct: 71 SSPESIFSKNL-SFRFPVLGSPCHGKGFRCLSGITRREEFSKSER-------------CL 130
Query: 128 NGSCPKSYSSVA-EAVSSTDVDEDASVDDEIQELLEEMSKEEKRQRQVKYRRRRLKMVNG 187
+G+ + Y+SVA E V STDV+E+ VD ELL+EM KE+KR+ +R R+K +
Sbjct: 131 SGTLARGYTSVAEEEVLSTDVEEEPEVD----ELLKEMKKEKKRE---SHRSWRMKKQDQ 190
Query: 188 MGEGK-KYQMLRRRQVTIETEAWEQAVKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPL 247
G G+ K+Q L RRQV IETE WE+A EY ELL DMCEQKLAPNLPY+KSLFLGWFEPL
Sbjct: 191 FGMGRTKFQNLWRRQVKIETEEWERAAAEYMELLTDMCEQKLAPNLPYVKSLFLGWFEPL 250
Query: 248 RDAISQEQELIRKGKNRTAYAPYFDQLPADMMSVITMHKLTGLLMMGHEHGSARVVQAAC 307
RDAI+++QEL R GK++ YA Y DQLPAD +SVITMHKL G LM G ++G +VV AAC
Sbjct: 251 RDAIAKDQELYRLGKSKATYAHYLDQLPADKISVITMHKLMGHLMTGGDNGCVKVVHAAC 310
Query: 308 VIGDAIEQEVRIHNFLEKMKKKKHDKDNENNDQLDSQMNEQERLRKKVTNLIKKQKLLAV 367
+GDAIEQE+RI FL+K KKK D + + ++ M EQ++LRKKV LIKKQKL AV
Sbjct: 311 TVGDAIEQEIRICTFLDK-KKKGDDNEESGGVENETSMKEQDKLRKKVNELIKKQKLSAV 370
Query: 368 RQIVKGTDDSRPWGKDTKAKVGSRLIELLTQTAYIQPPAEQLADGPPDIRPAFRHSFRTA 427
R+I++ D ++PW D +AKVGSRLIELL +TAYIQ PA+Q + PD+RPAF H+F+ A
Sbjct: 371 RKILQSHDYTKPWIADVRAKVGSRLIELLVRTAYIQSPADQQDNDLPDVRPAFVHTFKVA 430
Query: 428 MKEATKNCRRYGVIECHPLVVKGLERTVKHMVIPYMPMLVPPVNWTGYDKGGHIFLPSFF 487
K + + R+YGVIEC PLV KGLE++ ++ V+PYMPMLVPP+ W+GYDKG ++FL S+
Sbjct: 431 -KGSMNSGRKYGVIECDPLVRKGLEKSGRYAVMPYMPMLVPPLKWSGYDKGAYLFLTSYI 490
Query: 488 MRTHGAKQQRDAVKRAPKQQLTPVFEALDTLGSTKWRINKKILSVVDRIWTSGGRLADLV 547
M+THGAKQQR+A+K APK QL PVFEALDTLGSTKWR+NK++L+VVDRIW+SGG +AD+V
Sbjct: 491 MKTHGAKQQREALKSAPKGQLQPVFEALDTLGSTKWRVNKRVLTVVDRIWSSGGCVADMV 550
Query: 548 DRDDVPLPEKPDSEDETLLRKWKWDVRSLKKENMERHSQRCDIELKLAVARKMKDEEGFY 607
DR DVPLPEKPD+EDE +L+KWKW+V+S KK N ERHSQRCD ELKL+VARKMKDEE FY
Sbjct: 551 DRSDVPLPEKPDTEDEGILKKWKWEVKSAKKVNSERHSQRCDTELKLSVARKMKDEEAFY 610
Query: 608 YPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLRKSGLSWLKIHLANLFAGGVDK 667
YPHN+DFRGRAYPM P+LNHLGSDLCRG+LEFAEGRP+ SGL WLKIHLANL+AGGVDK
Sbjct: 611 YPHNMDFRGRAYPMPPHLNHLGSDLCRGVLEFAEGRPMGISGLRWLKIHLANLYAGGVDK 670
Query: 668 LSHEGRMTFVENHLEEIFDSADRPLEGRRWWLNAEDPFQFLAACMNLTEALRSSSPEAFI 727
LS +GR+ F ENHL++IFDSADRPLEG RWWL AEDPFQ LA C++LTEALRS SPE +
Sbjct: 671 LSLDGRLAFTENHLDDIFDSADRPLEGSRWWLQAEDPFQCLAVCISLTEALRSPSPETVL 730
Query: 728 SHIPIHQDGSCNGLQHYAALGRDELGAAAVNLVAGEKPADVYSGIAASIRTSNYAVVLMH 787
SHIPIHQDGSCNGLQHYAALGRD LGA AVNLVAGEKPADVYSGIA
Sbjct: 731 SHIPIHQDGSCNGLQHYAALGRDTLGAEAVNLVAGEKPADVYSGIA-------------- 790
Query: 788 ESVGNIFMLHLNIASNYDDLNQVLEIMRRDAQKDPATFPDALRAKTLMEQVDRKLVKQTV 847
+VL+IMRRDA +DP FP+ALRA+ L+ QVDRKLVKQTV
Sbjct: 791 --------------------TRVLDIMRRDADRDPEVFPEALRARKLLNQVDRKLVKQTV 850
Query: 848 MTSVYGVTYIGARDQIKRRLKERAAISDDSEIFGCSCYAAKTTLMALGEMFEAARGIMSW 907
MTSVYGVTYIGARDQIKRRLKER+ D+ E+FG +CYAAK TL A+ EMF+AAR IM W
Sbjct: 851 MTSVYGVTYIGARDQIKRRLKERSDFGDEKEVFGAACYAAKVTLAAIDEMFQAARAIMRW 910
Query: 908 LGHCAKIIASENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVLTRRQRT 967
G CAKIIASEN+ VRWTTPLGLPVVQPY ++G L+KTSLQ L+LQ ETD+V+ RRQRT
Sbjct: 911 FGECAKIIASENETVRWTTPLGLPVVQPYHQMGTKLVKTSLQTLSLQHETDQVIVRRQRT 970
Query: 968 AFPPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYET 1027
AFPPNF+HSLDGSHMMMTAVACK+AG+ FAGVHDS+WTHACDVD++N ILREKFVELY
Sbjct: 971 AFPPNFIHSLDGSHMMMTAVACKRAGVCFAGVHDSFWTHACDVDKLNIILREKFVELYSQ 980
Query: 1028 PILENVRLSF 1033
PILEN+ SF
Sbjct: 1031 PILENLLESF 980
BLAST of Clc11G05420 vs. TAIR 10
Match:
AT1G68990.1 (male gametophyte defective 3 )
HSP 1 Score: 1179.5 bits (3050), Expect = 0.0e+00
Identity = 589/912 (64.58%), Postives = 714/912 (78.29%), Query Frame = 0
Query: 130 KSYSSVAEAVSSTDVDEDASVDDEIQELLEEMSKEEKRQRQVKYRRRRL---KMVNGMGE 189
+ Y++ A+A+ STD ++++S DE+ EL+ EM KE +R R+ K R + +++ GMG
Sbjct: 71 EGYATAAQAIDSTDPEDESSGSDEVNELITEMEKETERIRK-KARLAAIPPKRVIAGMG- 130
Query: 190 GKKYQMLRRRQVTIETEAWEQAVKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAI 249
+K+ ML++RQV +ETE WE+A +E +E+L DMCEQKLAPNLPYMKSLFLGWFEP+R+AI
Sbjct: 131 AQKFYMLKQRQVKMETEEWERAARECREILADMCEQKLAPNLPYMKSLFLGWFEPVRNAI 190
Query: 250 SQEQELIRKGKNRTAYAPYFDQLPADMMSVITMHKLTGLLMMGHEH-GSARVVQAACVIG 309
+ + + K + YAP+ +QLPAD M+VITMHK+ GLLM E G ++V AA IG
Sbjct: 191 QDDLDTFKIKKGKIPYAPFMEQLPADKMAVITMHKMMGLLMTNAEGVGIVKLVNAATQIG 250
Query: 310 DAIEQEVRIHNFLEKMKKKKHDKDNENNDQLDS-----QMNEQERLRKKVTNLIKKQKLL 369
+A+EQEVRI++FL+K K KK+ D N + ++ E E+ RK+VT L++K KL
Sbjct: 251 EAVEQEVRINSFLQK-KNKKNATDKTINTEAENVSEEIVAKETEKARKQVTVLMEKNKLR 310
Query: 370 AVRQIVKGTDDSRPWGKDTKAKVGSRLIELLTQTAYIQPPAEQLADGPPDIRPAFRHSFR 429
V+ +V+ D +PWG++ + KVG+RLI+LL + AYIQPPAEQ DGPPDIRPAF+ +FR
Sbjct: 311 QVKALVRKHDSFKPWGQEAQVKVGARLIQLLMENAYIQPPAEQFDDGPPDIRPAFKQNFR 370
Query: 430 TAMKEATKNCRRYGVIECHPLVVKGLERTVKHMVIPYMPMLVPPVNWTGYDKGGHIFLPS 489
T E TK RRYG IEC PLV+KGL+++ +HMVIPY+PML+PP NWTGYD+G H FLPS
Sbjct: 371 TVTLENTKTSRRYGCIECDPLVLKGLDKSARHMVIPYLPMLIPPQNWTGYDQGAHFFLPS 430
Query: 490 FFMRTHGAKQQRDAVKRAPKQQLTPVFEALDTLGSTKWRINKKILSVVDRIWTSGGRLAD 549
+ MRTHGAKQQR +KR PK+QL PV+EALDTLG+TKW+INKK+LS+VDRIW +GGR+
Sbjct: 431 YVMRTHGAKQQRTVMKRTPKEQLEPVYEALDTLGNTKWKINKKVLSLVDRIWANGGRIGG 490
Query: 550 LVDRDDVPLPEKPDSEDETLLRKWKWDVRSLKKENMERHSQRCDIELKLAVARKMKDEEG 609
LVDR+DVP+PE+P+ ED+ + W+W+ + K+N ERHSQRCDIELKL VARKMKDEEG
Sbjct: 491 LVDREDVPIPEEPEREDQEKFKNWRWESKKAIKQNNERHSQRCDIELKLEVARKMKDEEG 550
Query: 610 FYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLRKSGLSWLKIHLANLFAGGV 669
FYYPHNVDFRGRAYP+HPYLNHLGSDLCRGILEF EG+PL KSGL WLKIH+ANL+AGGV
Sbjct: 551 FYYPHNVDFRGRAYPIHPYLNHLGSDLCRGILEFCEGKPLGKSGLRWLKIHIANLYAGGV 610
Query: 670 DKLSHEGRMTFVENHLEEIFDSADRPLEGRRWWLNAEDPFQFLAACMNLTEALRSSSPEA 729
DKL++E R+ F E+HLE+IFDS+DRPLEG+RWWLNAEDPFQ LAAC+NL+EALRS PEA
Sbjct: 611 DKLAYEDRIAFTESHLEDIFDSSDRPLEGKRWWLNAEDPFQCLAACINLSEALRSPFPEA 670
Query: 730 FISHIPIHQDGSCNGLQHYAALGRDELGAAAVNLVAGEKPADVYSGIAASIRTSNYAVVL 789
ISHIPIHQDGSCNGLQHYAALGRD+LGA AVNLV GEKPADVY+ IAA
Sbjct: 671 AISHIPIHQDGSCNGLQHYAALGRDKLGADAVNLVTGEKPADVYTEIAA----------- 730
Query: 790 MHESVGNIFMLHLNIASNYDDLNQVLEIMRRDAQKDPATFPDALRAKTLMEQVDRKLVKQ 849
+VL+IM++DA++DP TFP+A AK +++QVDRKLVKQ
Sbjct: 731 -----------------------RVLKIMQQDAEEDPETFPNATYAKLMLDQVDRKLVKQ 790
Query: 850 TVMTSVYGVTYIGARDQIKRRLKERAAISDDSEIFGCSCYAAKTTLMALGEMFEAARGIM 909
TVMTSVYGVTY GARDQIK+RLKER DDS F SCYAAK TL AL EMFEAAR I
Sbjct: 791 TVMTSVYGVTYSGARDQIKKRLKERGTFEDDSLTFHASCYAAKITLKALEEMFEAARAIK 850
Query: 910 SWLGHCAKIIASENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVLTRRQ 969
SW G CAKIIASEN V WTTPLGLPVVQPYRK GRHL+KT+LQVLTL RETDKV+ RRQ
Sbjct: 851 SWFGDCAKIIASENNAVCWTTPLGLPVVQPYRKPGRHLVKTTLQVLTLSRETDKVMARRQ 910
Query: 970 RTAFPPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELY 1029
TAF PNF+HSLDGSHMMMTAVAC +AGL+FAGVHDS+WTHACDVD MN ILREKFVELY
Sbjct: 911 MTAFAPNFIHSLDGSHMMMTAVACNRAGLSFAGVHDSFWTHACDVDVMNTILREKFVELY 945
Query: 1030 ETPILENVRLSF 1033
E PILEN+ SF
Sbjct: 971 EKPILENLLESF 945
BLAST of Clc11G05420 vs. TAIR 10
Match:
AT1G68990.2 (male gametophyte defective 3 )
HSP 1 Score: 1174.1 bits (3036), Expect = 0.0e+00
Identity = 590/919 (64.20%), Postives = 715/919 (77.80%), Query Frame = 0
Query: 130 KSYSSVAEAVSSTDVDEDASVDDEIQELLEEMSKEEKRQRQVKYRRRRL---KMVNGMGE 189
+ Y++ A+A+ STD ++++S DE+ EL+ EM KE +R R+ K R + +++ GMG
Sbjct: 71 EGYATAAQAIDSTDPEDESSGSDEVNELITEMEKETERIRK-KARLAAIPPKRVIAGMG- 130
Query: 190 GKKYQMLRRRQVTIETEAWEQAVKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAI 249
+K+ ML++RQV +ETE WE+A +E +E+L DMCEQKLAPNLPYMKSLFLGWFEP+R+AI
Sbjct: 131 AQKFYMLKQRQVKMETEEWERAARECREILADMCEQKLAPNLPYMKSLFLGWFEPVRNAI 190
Query: 250 SQEQELIRKGKNRTAYAPYFDQLPADMMSVITMHKLTGLLMMGHEH-GSARVVQAACVIG 309
+ + + K + YAP+ +QLPAD M+VITMHK+ GLLM E G ++V AA IG
Sbjct: 191 QDDLDTFKIKKGKIPYAPFMEQLPADKMAVITMHKMMGLLMTNAEGVGIVKLVNAATQIG 250
Query: 310 DAIEQEVRIHNFLEKMKKKKHDKDNENNDQLDS-----QMNEQERLRKKVTNLIKKQKLL 369
+A+EQEVRI++FL+K K KK+ D N + ++ E E+ RK+VT L++K KL
Sbjct: 251 EAVEQEVRINSFLQK-KNKKNATDKTINTEAENVSEEIVAKETEKARKQVTVLMEKNKLR 310
Query: 370 AVRQIVKGTDDSRPWGKDTKAKVGSRLIELLTQTAYIQPPAEQLADGPPDIRPAFRHSFR 429
V+ +V+ D +PWG++ + KVG+RLI+LL + AYIQPPAEQ DGPPDIRPAF+ +FR
Sbjct: 311 QVKALVRKHDSFKPWGQEAQVKVGARLIQLLMENAYIQPPAEQFDDGPPDIRPAFKQNFR 370
Query: 430 TAMKEATKNCRRYGVIECHPLVVKGLERTV-------KHMVIPYMPMLVPPVNWTGYDKG 489
T E TK RRYG IEC PLV+KGL+++V +HMVIPY+PML+PP NWTGYD+G
Sbjct: 371 TVTLENTKTSRRYGCIECDPLVLKGLDKSVSRIVDYARHMVIPYLPMLIPPQNWTGYDQG 430
Query: 490 GHIFLPSFFMRTHGAKQQRDAVKRAPKQQLTPVFEALDTLGSTKWRINKKILSVVDRIWT 549
H FLPS+ MRTHGAKQQR +KR PK+QL PV+EALDTLG+TKW+INKK+LS+VDRIW
Sbjct: 431 AHFFLPSYVMRTHGAKQQRTVMKRTPKEQLEPVYEALDTLGNTKWKINKKVLSLVDRIWA 490
Query: 550 SGGRLADLVDRDDVPLPEKPDSEDETLLRKWKWDVRSLKKENMERHSQRCDIELKLAVAR 609
+GGR+ LVDR+DVP+PE+P+ ED+ + W+W+ + K+N ERHSQRCDIELKL VAR
Sbjct: 491 NGGRIGGLVDREDVPIPEEPEREDQEKFKNWRWESKKAIKQNNERHSQRCDIELKLEVAR 550
Query: 610 KMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLRKSGLSWLKIHLA 669
KMKDEEGFYYPHNVDFRGRAYP+HPYLNHLGSDLCRGILEF EG+PL KSGL WLKIH+A
Sbjct: 551 KMKDEEGFYYPHNVDFRGRAYPIHPYLNHLGSDLCRGILEFCEGKPLGKSGLRWLKIHIA 610
Query: 670 NLFAGGVDKLSHEGRMTFVENHLEEIFDSADRPLEGRRWWLNAEDPFQFLAACMNLTEAL 729
NL+AGGVDKL++E R+ F E+HLE+IFDS+DRPLEG+RWWLNAEDPFQ LAAC+NL+EAL
Sbjct: 611 NLYAGGVDKLAYEDRIAFTESHLEDIFDSSDRPLEGKRWWLNAEDPFQCLAACINLSEAL 670
Query: 730 RSSSPEAFISHIPIHQDGSCNGLQHYAALGRDELGAAAVNLVAGEKPADVYSGIAASIRT 789
RS PEA ISHIPIHQDGSCNGLQHYAALGRD+LGA AVNLV GEKPADVY+ IAA
Sbjct: 671 RSPFPEAAISHIPIHQDGSCNGLQHYAALGRDKLGADAVNLVTGEKPADVYTEIAA---- 730
Query: 790 SNYAVVLMHESVGNIFMLHLNIASNYDDLNQVLEIMRRDAQKDPATFPDALRAKTLMEQV 849
+VL+IM++DA++DP TFP+A AK +++QV
Sbjct: 731 ------------------------------RVLKIMQQDAEEDPETFPNATYAKLMLDQV 790
Query: 850 DRKLVKQTVMTSVYGVTYIGARDQIKRRLKERAAISDDSEIFGCSCYAAKTTLMALGEMF 909
DRKLVKQTVMTSVYGVTY GARDQIK+RLKER DDS F SCYAAK TL AL EMF
Sbjct: 791 DRKLVKQTVMTSVYGVTYSGARDQIKKRLKERGTFEDDSLTFHASCYAAKITLKALEEMF 850
Query: 910 EAARGIMSWLGHCAKIIASENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETD 969
EAAR I SW G CAKIIASEN V WTTPLGLPVVQPYRK GRHL+KT+LQVLTL RETD
Sbjct: 851 EAARAIKSWFGDCAKIIASENNAVCWTTPLGLPVVQPYRKPGRHLVKTTLQVLTLSRETD 910
Query: 970 KVLTRRQRTAFPPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDVDEMNRILR 1029
KV+ RRQ TAF PNF+HSLDGSHMMMTAVAC +AGL+FAGVHDS+WTHACDVD MN ILR
Sbjct: 911 KVMARRQMTAFAPNFIHSLDGSHMMMTAVACNRAGLSFAGVHDSFWTHACDVDVMNTILR 952
Query: 1030 EKFVELYETPILENVRLSF 1033
EKFVELYE PILEN+ SF
Sbjct: 971 EKFVELYEKPILENLLESF 952
BLAST of Clc11G05420 vs. TAIR 10
Match:
AT2G24120.1 (DNA/RNA polymerases superfamily protein )
HSP 1 Score: 1090.5 bits (2819), Expect = 0.0e+00
Identity = 534/848 (62.97%), Postives = 654/848 (77.12%), Query Frame = 0
Query: 188 KKYQMLRRRQVTIETEAWEQAVKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIS 247
+K+ LRRRQV ETEAWE+ V EY++L +MCE+ LAPNLPY+K +FLGWF+PL+D I
Sbjct: 157 RKFDSLRRRQVKEETEAWERMVDEYRDLEKEMCEKNLAPNLPYVKHMFLGWFQPLKDVIE 216
Query: 248 QEQEL--IRKGKNRTAYAPYFDQLPADMMSVITMHKLTGLLMMGHEHGSARVVQAACVIG 307
+EQ+L + K R AYAP+ + LPAD M+VI MHK+ GL+M GHE G +VVQAA IG
Sbjct: 217 REQKLQKNKSKKVRAAYAPHIELLPADKMAVIVMHKMMGLVMSGHEDGCIQVVQAAVSIG 276
Query: 308 DAIEQEVRIHNFLEKMKKKKHDKDNENNDQLDSQMNEQERLRKKVTNLIKKQKLLAVRQI 367
AIEQEVRIHNFL++ +K N ++ E++ LRK+V +LI++++++ ++
Sbjct: 277 IAIEQEVRIHNFLKRTRK-------NNAGDSQEELKEKQLLRKRVNSLIRRKRIIDALKV 336
Query: 368 VKGTDDSRPWGKDTKAKVGSRLIELLTQTAYIQPPAEQLADGPPDIRPAFRHSFRTAMK- 427
VK ++ ++PWG+ T+AK+GSRL+ELL + AY+QPP Q D P+ RPAFRH F+T K
Sbjct: 337 VK-SEGTKPWGRATQAKLGSRLLELLIEAAYVQPPLTQSGDSIPEFRPAFRHRFKTVTKY 396
Query: 428 EATKNCRRYGVIECHPLVVKGLERTVKHMVIPYMPMLVPPVNWTGYDKGGHIFLPSFFMR 487
+K RRYGVIEC L++ GL+++ KHM+IPY+PMLVPP W GYDKGG++FLPS+ MR
Sbjct: 397 PGSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPMLVPPKRWKGYDKGGYLFLPSYIMR 456
Query: 488 THGAKQQRDAVKRAPKQQLTPVFEALDTLGSTKWRINKKILSVVDRIWTSGGRLADLVDR 547
THG+K+Q+DA+K + VFEALDTLG+TKWR+N+ IL VV+R+W GG +A LV+R
Sbjct: 457 THGSKKQQDALKDISHKTAHRVFEALDTLGNTKWRVNRNILDVVERLWADGGNIAGLVNR 516
Query: 548 DDVPLPEKPDSEDETLLRKWKWDVRSLKKENMERHSQRCDIELKLAVARKMKDEEGFYYP 607
+DVP+PEKP SED L+ WKW R K N ERHS RCD+ELKL+VARKMKDEEGFYYP
Sbjct: 517 EDVPIPEKPSSEDPEELQSWKWSARKANKINRERHSLRCDVELKLSVARKMKDEEGFYYP 576
Query: 608 HNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLRKSGLSWLKIHLANLFAGGVDKLS 667
HN+DFRGRAYPMHP+LNHL SDLCRG LEFAEGRPL KSGL WLKIHLANL+AGGV+KLS
Sbjct: 577 HNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLGKSGLHWLKIHLANLYAGGVEKLS 636
Query: 668 HEGRMTFVENHLEEIFDSADRPLEGRRWWLNAEDPFQFLAACMNLTEALRSSSPEAFISH 727
H+ R+ FVENHL++I DSA+ P+ G+RWWL AEDPFQ LAAC+ LT+AL+S SP + ISH
Sbjct: 637 HDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQCLAACVILTQALKSPSPYSVISH 696
Query: 728 IPIHQDGSCNGLQHYAALGRDELGAAAVNLVAGEKPADVYSGIAASIRTSNYAVVLMHES 787
+PIHQDGSCNGLQHYAALGRD AAAVNLVAGEKPADVYS I+
Sbjct: 697 LPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGEKPADVYSEIS---------------- 756
Query: 788 VGNIFMLHLNIASNYDDLNQVLEIMRRDAQKDPATFPDALRAKTLMEQVDRKLVKQTVMT 847
+V EIM++D+ KDP + P A AK L+ QVDRKLVKQTVMT
Sbjct: 757 ------------------RRVHEIMKKDSSKDPESNPTAALAKILITQVDRKLVKQTVMT 816
Query: 848 SVYGVTYIGARDQIKRRLKERAAISDDSEIFGCSCYAAKTTLMALGEMFEAARGIMSWLG 907
SVYGVTY+GAR+QIKRRL+E+ I+D+ +F +CY+AK TL ALGE+FEAAR IMSWLG
Sbjct: 817 SVYGVTYVGAREQIKRRLEEKGVITDERMLFAAACYSAKVTLAALGEIFEAARAIMSWLG 876
Query: 908 HCAKIIASENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVLTRRQRTAF 967
CAKIIAS+N PVRW TPLGLPVVQPY + RHLI+TSLQVL LQRE + V R+QRTAF
Sbjct: 877 DCAKIIASDNHPVRWITPLGLPVVQPYCRSERHLIRTSLQVLALQREGNTVDVRKQRTAF 936
Query: 968 PPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYETPI 1027
PPNFVHSLDG+HMMMTAVAC++AGLNFAGVHDSYWTHACDVD MNRILREKFVELY TPI
Sbjct: 937 PPNFVHSLDGTHMMMTAVACREAGLNFAGVHDSYWTHACDVDTMNRILREKFVELYNTPI 962
Query: 1028 LENVRLSF 1033
LE++ SF
Sbjct: 997 LEDLLQSF 962
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_038890080.1 | 0.0e+00 | 85.01 | DNA-directed RNA polymerase 2, chloroplastic/mitochondrial-like isoform X1 [Beni... | [more] |
| XP_022993982.1 | 0.0e+00 | 83.43 | DNA-directed RNA polymerase 2, chloroplastic/mitochondrial-like [Cucurbita maxim... | [more] |
| XP_022939617.1 | 0.0e+00 | 84.41 | DNA-directed RNA polymerase 2, chloroplastic/mitochondrial-like [Cucurbita mosch... | [more] |
| XP_022134053.1 | 0.0e+00 | 82.14 | DNA-directed RNA polymerase 2, chloroplastic/mitochondrial-like [Momordica chara... | [more] |
| XP_023551171.1 | 0.0e+00 | 84.83 | DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial-like [Cucurbita pepo... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Q8VWF8 | 0.0e+00 | 67.97 | DNA-directed RNA polymerase 2, chloroplastic/mitochondrial OS=Nicotiana sylvestr... | [more] |
| Q8L6J3 | 0.0e+00 | 68.19 | DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial OS=Nicotiana tabacum... | [more] |
| Q8L6J5 | 0.0e+00 | 66.83 | DNA-directed RNA polymerase 1B, mitochondrial OS=Nicotiana tabacum OX=4097 GN=RP... | [more] |
| Q93Y94 | 0.0e+00 | 66.73 | DNA-directed RNA polymerase 1, mitochondrial OS=Nicotiana sylvestris OX=4096 GN=... | [more] |
| Q9LFV6 | 0.0e+00 | 63.01 | DNA-directed RNA polymerase 2, chloroplastic/mitochondrial OS=Arabidopsis thalia... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1JUF5 | 0.0e+00 | 83.43 | DNA-directed RNA polymerase OS=Cucurbita maxima OX=3661 GN=LOC111489816 PE=3 SV=... | [more] |
| A0A6J1FHA8 | 0.0e+00 | 84.41 | DNA-directed RNA polymerase OS=Cucurbita moschata OX=3662 GN=LOC111445458 PE=3 S... | [more] |
| A0A6J1C0Y4 | 0.0e+00 | 82.14 | DNA-directed RNA polymerase OS=Momordica charantia OX=3673 GN=LOC111006419 PE=3 ... | [more] |
| A0A0A0KXM5 | 0.0e+00 | 78.76 | DNA-directed RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_5G642180 PE=3 SV=1 | [more] |
| A0A1S3CBC4 | 0.0e+00 | 77.77 | DNA-directed RNA polymerase OS=Cucumis melo OX=3656 GN=LOC103498556 PE=3 SV=1 | [more] |
