Clc11G05340 (gene) Watermelon (cordophanus) v2

Overview
NameClc11G05340
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionE3 ubiquitin-protein ligase
LocationClcChr11: 5126059 .. 5135229 (-)
RNA-Seq ExpressionClc11G05340
SyntenyClc11G05340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAAAAGAAAAGAAAAACAAAACAAAACAAAATAGAAACAGTTGGATCTAAAATGGTTTGGCTTCTCATTTTACTTCTTCTCAATTTGAGTTTCTTTGATCTTTCTGAGGCTAGGCATCACAGGAAGCTCCCTTCGGCCGTCGTTGTCGGTACCGTCTTCTGCGACACATGCTTTCAAGAGAAATTTTCCAAGACCAGTCACTTCATTTCAGGTAGTTTTACCACGTCTAGTGTTGGAAAGCTTAAATTTGTGTAGTTGCATAACTCAACTAGCTAGTTAAGACCAAGTATGGGGTCCTGTTGCCTGCTCAGTGAGTCAGGTCTGATGGAGTTTGAGTGCAACATGCCTAAAACCTAAGTTGTATTCGTATTTATGTTATTTACAATTTTGACCTTAGGGTTGAGAGAGGTGCACTATATATTTCTCTTCAATAATAAAATTGCTCACTCCCTTTGCTCGTGGACGTAGCTAACATGCTGTTAGTGAATCATGTAAATCTATGTGTCGATTTTCTCTAGTGTTTATGTTTTCATCAGTTCTCTTTGTTTGTCTATTTCATAATGGTTGATATGTACTATGTAGGTGCAACGGTTGCTGTCGAATGTGGAGGAGAATCAAAACCGAGTTTTAGAGAAGAAGTAAAGACAGACAAAAGAGGGGAATTCAAGGTTAATTTGCCAGTTTTAGTGACCAAACATGTGAAGATGATTGAGGAATGTTATGTGCAATTAATTAAAAGTAGTGAACCATATTGTGCAGTGGCTGCAACAGCAAAATCATCTTCCCTTCAACTCAAGTCAAAAAAACAAGGCGCACACACATTCTCAGCTGGCTTCTTCACTTTCAAGCCTCTAAAACAACCAAACCTTTGCAACCAAAAGCCTCAATATTCCAACACATTTGATGACATGAAACAAGTCCTCCCCGCGCCCCCACCGTTCGACTTCCCGAGCTTGCCATCTCCTATCCAAAACCCGTCCGTGCCGAACGTTCCTCGGATTTACGATAACCTTCCTCCTCTCCCATTGCTTCCTGGCCTTCTTCCATTGCCTCCATTGCCTCCATTGCCACCACTCCCTCCTCTTCCACCTCTCCCTGGCTTTCCACTGTTCCCACCAAAAAAGAATGATGAAAATAATGTACCAAATGAAATTCCAAACACAAGTGCAAAACAACATCAGTTTCATCCACAGACTTTGCTTCCAATGCCACCCATTAAGCCTTTGAAAAGGCCACATTTTTTTGGTCTGCCTCCACACAGGCTGCACCACCACTACCCTCTCTTGCCTCCATTCTCAACTCATACGGCAGCTGCAGCGGGGGCCGGTGACTTGGCCCCGTCACAGCCGTTACCTTTTTCGCTCCCTTCAGTGCCTGGCCTGCCTAAGATCTCCTCACCTCCAAAGCAAACTTTTCCTTGAAATATTTTAACATTTGAACCAAAGATTTAGAATAAGTGGTAATTGCAAATATAGCAATTAGGTGCTAAAAGTATTAGCAAATATAACACAATGCAAAAGAATTTGTAGATATAGTAAAATCTAGATCCAACTCTTAGATTCTATCAGTAATAGACTATATCGTTGATAAGTAAAATCTTGATAAGAGTCTATCAATGGTAAAATCTATCACTGGTAGATTTTGCTATACTTGCAATTCTTTGAAATTGTTGTTATACACTAAATTATTAGTTTTAAAAGTGCTACTTATTGCAAGTACCCTATTTATTTTCTGCTTGTAACCTTCCGCATCTTTTCTAGTAAAAATCAATAATTGGGAGCTGAATTCGATGGATTTGAGGAAAATTGATAGTTAGGATTTGACATAAAAAGGTTGGTATTGTGTTTTGGATAAGTTTGGTCATATGATTGTTCATGTTGTTGGGATGGATGGGACAACTCTAGCTTTTGTTGAGAAAAGTAGAGTATAATTGGACGATTGATTCAACTTCTTTTAATTTGTTTATGTTATTGAATAAAAATGACATGTTACTAATTTAAATACATTATTTCTAAAAATGGGCTGAAAATTATTGGAACTTAAGACCAAGAATTAAAATACGAGCAATTTGTGAACGGTATTCGGTAAGATTTGAAAGAGGAATCGAAACAAGTGAAATATGTTGCATTTTGGTGATAACATAAACGAGTATGCTTTGCAAAACCAAAAATTAATTATGTATTTGGATTCAACCATTTTTTTTAATCTTTTTTAGTACAACAATTGCAAGTATAGAAATAGAATGTTAGGCCTCTAAGGAGGAAACTTGTATCAATTACTATTGATTAGTACAAATTCAATAATAAATGAAAGGTGCAATTTGTGAAATCTTAATTGAAACCGTCTTCATTATTACTATCATTATTTTATGTAGTTGTTTAGAATTATATAAATTACAAAATCTTAATTGGGTTAAGTGCAGCCCGAATTGCACATGATCATTGCGTTTTTTAAAGGATGGAATGGAATAAATGAAAATATAAGAATAAAAATACAATGCATCTTATTTAACCATATAGAGAGGCCAAACTTCCTATGTTGTTGAGTTTAAAAAGTGAACAAAAGTTAAAAGATAAATTAAATTACAAAAGTTACTTAACATAGCTTATTTAGTTAATATAAATGAAGAGGTTATTTGGTTAATTTATATCAAGAGGTCAAAGTTTCAGAACTTTTTATTTAGATTTAGTCTTAAACATATAAAATAAAAAAAGTGGTTTGAAAGTAAAATATAGGTTAAATTATAAAAAAATATGATATTTGTTTTCAAAATAACCTTGTTTGATAAGATTTTCGAAAAAAATTTAATTTGCTAAATAAATTTTGAATTTGTATTCATTTTAAGTATAATCTCTAATATTTAATTCTTTGATGCTTTTCCTAAATTTGTGTTGAGGGCTTTGCAACTTGTCCTTGATATTGATTTGGCTTTACAACTTTACAGATCTTCAGAGTTTGAGAGCTTGAGAGCTTTGATCTTTAAAGCTTTAGAGATTGAGAGCTATAGTCTTCATAACTTTAGAAATTGAGAGCTGTCTTCAAAATTTTAGAGCTAGAGAGCTTCGCTTTTCACTCTTTAGAACCGGAGAGCTTTAGAGTTTTGGTCTTCAAAACTTGAGAGGTAAACAGAGCTTTGATCTTCAAAGCTTGACAACTTCAATTCTTTAAAACTTGAGAGATTTGGTCTTTAGTTTTTTAGAATTTGAGAGTTTTAGAGTTTCGATTTTTAGAGCTTCAATCTTCAGAGCTTGAGAGATTTAGAGCTTCAATCTTCAATTCTTCAAAGCTTAAGAGATTTGGTCTTTAGTTTTTCAAAACTTGAGAGCTTTAGAGTTTTGGTATTCAAAGCTTCGATCTTCAGAGTTTGAAAGCTTCGTTCTTTAGAGCTCCAGAGCTTCAGTTCTCCAAATCTTCCCAAAAGTGAAGGTCGGTTCTTCATTTATGGAGTTTTCACAAGCTTGGGCCTAGTTGCTTTGGGCACCAAATATTGGGGTTGGACTTGGGCACAATACTTTCTTTGGCTCAAATTTCATAATGGGCTTAAATTGGGTTTGACTTTAGACCCGAACGACTTTAATTTCTCTACCCGCTTCAATTTATAATTTCAAGCCTCTAGTAAGATTTATTGATCATGGTCCATGGTTAATCATCGTTGAACACAATCGGATAATTAGAAAGTAGGCTCATGGCATTTTTTTACTTGTCATTTATTTGTCTCAAATTTTATTCGAAGGACACCATAATTCTTAGTTCTTAAATTTAATAAATTGAGTTGTTGGTTGTGATGATTTGACACTTTGTGATTGGTCGAAATTTCTTCCAACAAGCGCTTGTAGATTTTTGTTTGGATAAATTTTACAAAATATTTGTACCTACTTACATGAATAAATGTAAACATGTTGATAAAAATAAAGACACGTGAGGTATCTGTAAAGTATATTAGTTGTCATATTCCTCATTCCAAAATTCAAACGTATGCCCCCAATTTTATGTTCTTTCAAACGCCCCAATTTACTTATTGTATGTGTTTAGATTTGTTCATTTAAGCTACACACAAGCAAACGAGCATTTTTCTGCTAATGAATTTAATGACAAACGCAATTGTTCTGAAAAAATTTCAAATTTCAAAAGCTAAGACCCGATTTGGTAACTAGGTTTTTGTTTCTTCTTTTAAAAATTAAGCCTATAAACACTCATATTCTACCTCTAAATTTCTTGATTTGTTATCTACTTTTTTACCAATGTTTTTAAAAACCTAGCCAAAATCTGAAAACTAAAAAAAGGTAGTTTTTAAAATTTTTGAAATTTGGTTAAGAATTCAACTCTTATACTTAAAAAAGATGCAAATTATTGGAACAAATTGAGAAGAAATAGACTTCATCTTAGAAAACGTAACGATTAATTATTAGCCCTAGAAGTGTCAAAGTATCAGTAGATATAGAACAATGCAAAAGAATTTACAAAATTTAGATCAAGTTCTCACCTATTAGAGTTTCAATAGTCTATATTGCTGAGTTTATAAACGATAAAATCTACCCGCAATTAGAGTCTATCAAAAATAAATTTTGCTATATTTGTAATTATTTAAAAAATAGAAAAGAAATTAGGATTAGAACCAAAAAAGTAATTGAAGGCTGAAATTAGTACCAAATTGTAATATAGTACTAGGAAGCGAGTGGAGATTAATTAGAGCATTTTATCCACCTACCAGCAAAGAGGGCACCGGCAGCGAGCGAGAGAGGAAGAAATCGAGATATTGAGGGAAGAAGGCGGCTTTAATTTCGCGGAATTCATCGCCTTCAATTCATCGCCTTCAATTTTCCAATCCAAATTCCCCTTAAAATGCGCAATCTTGATTTAGCTTGAAATTCCAATATCTGTGTGCGTGATTTTTACCAAAAAGCGCATGTATATAATCTCCGCATATTCTCATTCCTCCCAATTTCCGACTTCCAGGTTTCTCTGTCCTCCACCCACCACCGAAGATCGTATTCTCTTTCGGTCTTCTCTTCTCTTCTCCCTCCACTTTACTCCTCTCTCAAGGTACTTCTCTTTTTCCCAACTATTCTCTATGTCCACGGGGACCCTTTTTCATGATCGCCCCATATTTTGTTTGTTCTGTATTGGGTTTCTGATTCTTTTCATGATTTATGCGTATTCGTTGCCCGATCGTCTATTTGTTGAGTTTTATTTTTTTTTTTTCTCATGTGGTTGTCGTATAATTTGAATACTTTGTTGTTTTTTTTTTGTCCTGTACCCCTTATTCTTCAATGGGTACATTGGATGAGTCGTGTATGTTCTGGATGATGATGATCAGCTTGGTTTGCTATTGATATCTTTATGGCATCTCTTTTTCTCATCACCGAAGGAAAGAATCCGGTGTTTTCAGAGGTGACCCAGGAAAAGAAAAGGTCAATTTGGTGAGATGGGTGGGTTGCTTTGACCGAAGGCTGTGGCATTTGATTAACACTTCGATTTGTTTTTGGCTGTTTCAACAATTTTTTCTTTCATTATTGTGATTGTTGCGGTTTTGGATTGCTGCCGACAGATTCGTGTTCCTTTAAATAATGCCGGTTGTTGGTTTAATTTATGATTTAGTCAGAATTGTTGTTTGACTTGCGTTCTAGGTGATGACATTAGCATTCATCACAGTTGCTTTGAGGATAATCCCTTTGGATCCCCATGTCTTTAACCTTACTGAACATAGGCTGCTAATTTTACAGGTGAAAATCACAGTTTAAAAAAATCCAGTTTATCAACTTGAAGAAAGAGGGTACTGGTTCGTGGAGGCAATAGTACTTCTGCGAGCTTATGTACTCTCGTCTCCATTTTCCTGCATAATCATTGGCCGAGACCTCTCCATTTGAATGCAATTGAATAGCTAAATTGGTCTATCTGTTGACTTGGGAATCTGCTGGGTTGGATAATCGAGAATAATAAAAAGATTGGTAGGAGTTTGGCACAATGGGTGCTGTCTGCTGCTGTTTGAGCGTGGAGGATTTTGAAGACTATGTTAATCCTAATAGTTCAGTATATAGGAATTGCACCTGTCTTAGTTGCTTCATTCAGAGTTTCTTAAATGCAGTAAGCCCTATTTCTGTTGCAATATGTTATTTTGCCATATTTCACTATCAAGGAGGAAAATAGTAGTATTTATGGATACACATATTGACAATGAGATTTTTCTGGAATGTCAATATTGGTGAAAATTCAAAGAAAAAAAAAAGAAAGTTAGAAATAAAAGATATTTTGAGTACTATACTCTCATATTTTGTCATCACAAAGTTGAAGAAAAAATTTCAAATATTTGTTTTATTTTACTTGGATTTGACATTTACATAGTACTAGAGTCTAGAGTTAAAGAAAATTTATTTTTCATGAAAAATTGATGATAAAAAATTGGAATTACAAATGTTAGGAGGGACATGTCTTGAATATTAATGCTACTTCCTTGTATGTCATATTATTGTGCTGTTTGTTTTCTTTTGTATCTCCATATTTCCTACCTATATTCTTTCCTTTGCTTTATAATGCACGTTAGCATGGATAAATATATATAACCTGGAACCCGCTATTCATAATAATATATTTATGGAAAAACACGTGTAATTTGTTTCCAGCGTCACAAGTGTTTAGCTGTAGTTTGTGATTTTATTCTCAAGATATTTATATTAATCTGTTTTTCCTCTTACTTCCGCTAGTACACATTGATTTTTCGAAGAGGAGAAGTGCATTCTGTCTCTTCATCAATTCAAGGGGCAACATCCATGAATTCCACAGCATCGACAGATAACTCTTTATCTGAAATGTACCGCTCACCTCCAAGGCCATTGCCTTATGATGCTGATCCCAGATATATCCGCTTGCAGCGGGATGGATTAATTTCTAGGCGAGAGAAGGGGTCAAGCCATTTACATGAAGAGTCAGAACCTTTAAGAAGTGATGTGGATACCGATTCAGATTCTTTGGGCTCAGCAGGCAAATGGAATGGTTCTGCTTGTCTTGAGGAATCTAAAGAAAACCTTGGCAAATCATCTCTAAAGTTCCCTTCAACTAAATCTACCACTGGACTTGGGTATTCTTATACATCCTCCGAAGATGAGGATGTCTGTCCAACGTGTCTTGAAGGTTGATTTATTTAATTAACTTCATTTTATTATGGATTTTATTTTCTACTCTATTGTTTTTGCGCTTGATGTTCTTGTTTGTTGAGCTTCTGGGTGGCAAACAAGTTTAGTGATCGACAGATATTTTAACATGTCAAATTTTCTTTCTGCTCATTTAATGTTCTTTTCCCTTGCAGAATATACTTCAGAGAATCCCAAGATAGTGACAAAATGCTCTCATCATTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGATAACTGTCCAGTTTGTGGCAAGGTATGGTTCCTTTCCTCCGTCGTATCATGCAAACTTGTTCAATCACTATCTCAAAGCAGCCCTATTGGTTGTGTTATAGTGTCTGACTCAGATTGGTGTTTGGATCTTTTTAAGTTTTGGAAGTTATGAAATTTAAGGTTTTTCATAAAATTTGTGTTCCTTTTATTTATAAAATTAGTATGACTTTATGATTTCACACTTATGATTTTAAGCAAAGATAACTGTTATTTATATACGGATCGGGCATAAGGACCTTTTTTTTAGTGAGAATCTTCACTTCATTGATTAGATGAAATTACAAAAGAGGCACAGAGGCCCATATGATTCAGAGAAAATATTGGCAATGAGCAGAGAGAGAAGTAAGGCTATAGTCCCAAAAAAGTGGGGAAATTTACCCCAAGTGAGAGCAATGTAAGTAAGGTGTTATAAAAAAGAGTCAAAATCAATAGCTTTTTCCTCGAAGATGTGTTGGGTCTGCTCGAGCCATGTTAACCAAAGGAAGGCTTTGTTGAAGAGACCTATATGACCTCCTTTTCTTTGCTGAAGGGGTGGCCCATGAAGAGCACCGCTAAAAGAGTCTAGAATCATCACGGTCCTTTTGGAATAACATAGATCCTTTAATATGATCCATTTATTTATGTCTGGAGCTGTTAGATTAAGTTATGTTAGAATATCTCATACCATAAAACTTCTAAGGACACATCATCTTTTCTTGTCCTTCATCTCCTTAGAATGGGATAAGTCTGATCTCATTTTTCTTGTTTTTGTTGAAAACCTGATATTGGGGGCCCCACCCCACGAATCCAGGGGAAGCTACACTCGCCCTTAGATTCAGACCCAGGAGACACCATGGAAGGACTTTTATATCTGAAGGTTCAAACGCTTGTCTTCTGGGTAGGTGTTATCAAGAGACTGCATGCCTTTGCCAACAAGGTGCCCTTTGGGGGCTAGTTGATCTCATTTTGATATCAATATTTATGCTTTTTAGAATAAGATGGCACATTAACGTGGTAATGTTTGAAATTTTATATGGTTAAACTAATAAATAATATAACACTGCACCATTTTGTGATATTCAGTTGGTAGGGTTGTGCATCAGTAATTTTTGGTATAATAACTAATGTTCCTTCCCCATCTCCTTCACTGGTGAAGCTTTGGGAAATAACCTTCAGATGAAACATGATCCTTAGATGCCCTTCTACGTTTAAAATGGCGGGTTATCTTGCATAGTATAAAATTATTCCTTACGGATGGTATTCTAGTGATTCCAAATCATGTTAGAGGTGGAATTAGCTTGTAAGTTTGTTGCTTAACTAAAATAGTACCAGCAATAATCGATTAAGATCGCATGGTACAACTGGCAATTTTATTCAAAAAGGAAAAGTGGCTTTGCCTGTGTATAAATTTGGTGTAGAGTGAATAGTCTGTAAACTGTTATGCAACCCATTATTTACTTATGATGGTACCTTGAAGAACTCCGCCTGATCCATGTAGTATGAAACTTATGGCTGTCACTTGGCTATGATATTCGACGGTAGGAAAACCAGTGGAATGATTTAGATACAATTTGTCTTTTTTTAAAATGTTTTACAGTGTACAGATAGTTTTTACTGTGAATATGATTTTCAACTGAATCTGAACTGATTTGTAAATTGTAGACAAATTTTAAATAGGAGGAAAGCTATTGTCTAAAAACCCCATATTACTTGTCATATTATTGGGGTTCTTTCTCCTTAAACAGGCCTGTGACCTAG

mRNA sequence

AAAAAAAAAGAAAAGAAAAACAAAACAAAACAAAATAGAAACAGTTGGATCTAAAATGGTTTGGCTTCTCATTTTACTTCTTCTCAATTTGAGTTTCTTTGATCTTTCTGAGGCTAGGCATCACAGGAAGCTCCCTTCGGCCGTCGTTGTCGGTACCGTCTTCTGCGACACATGCTTTCAAGAGAAATTTTCCAAGACCAGTCACTTCATTTCAGTGGCTGCAACAGCAAAATCATCTTCCCTTCAACTCAAGTCAAAAAAACAAGGCGCACACACATTCTCAGCTGGCTTCTTCACTTTCAAGCCTCTAAAACAACCAAACCTTTGCAACCAAAAGCCTCAATATTCCAACACATTTGATGACATGAAACAAGTCCTCCCCGCGCCCCCACCGTTCGACTTCCCGAGCTTGCCATCTCCTATCCAAAACCCGTCCGTGCCGAACGTTCCTCGGATTTACGATAACCTTCCTCCTCTCCCATTGCTTCCTGGCCTTCTTCCATTGCCTCCATTGCCTCCATTGCCACCACTCCCTCCTCTTCCACCTCTCCCTGGCTTTCCACTGTTCCCACCAAAAAAGAATGATGAAAATAATGTACCAAATGAAATTCCAAACACAAGTGCAAAACAACATCAGTTTCATCCACAGACTTTGCTTCCAATGCCACCCATTAAGCCTTTGAAAAGGCCACATTTTTTTGGTCTGCCTCCACACAGGCTGCACCACCACTACCCTCTCTTGCCTCCATTCTCAACTCATACGGCAGCTGCAGCGGGGGCCGGTTTCTCTGTCCTCCACCCACCACCGAAGATCGTATTCTCTTTCGGTCTTCTCTTCTCTTCTCCCTCCACTTTACTCCTCTCTCAAGCTTGGTTTGCTATTGATATCTTTATGGCATCTCTTTTTCTCATCACCGAAGGAAAGAATCCGGTGTTTTCAGAGGTGATGACATTAGCATTCATCACAGTTGCTTTGAGGATAATCCCTTTGGATCCCCATGTCTTTAACCTTACTGAACATAGGCTGCTAATTTTACAGGAGTTTGGCACAATGGGTGCTGTCTGCTGCTGTTTGAGCGTGGAGGATTTTGAAGACTATGTTAATCCTAATAGTTCAGTATATAGGAATTGCACCTGTCTTAGTTGCTTCATTCAGAGTTTCTTAAATGCATACACATTGATTTTTCGAAGAGGAGAAGTGCATTCTGTCTCTTCATCAATTCAAGGGGCAACATCCATGAATTCCACAGCATCGACAGATAACTCTTTATCTGAAATGTACCGCTCACCTCCAAGGCCATTGCCTTATGATGCTGATCCCAGATATATCCGCTTGCAGCGGGATGGATTAATTTCTAGGCGAGAGAAGGGGTCAAGCCATTTACATGAAGAGTCAGAACCTTTAAGAAGTGATGTGGATACCGATTCAGATTCTTTGGGCTCAGCAGGCAAATGGAATGGTTCTGCTTGTCTTGAGGAATCTAAAGAAAACCTTGGCAAATCATCTCTAAAGTTCCCTTCAACTAAATCTACCACTGGACTTGGGTATTCTTATACATCCTCCGAAGATGAGGATGTCTGTCCAACGTGTCTTGAAGAATATACTTCAGAGAATCCCAAGATAGTGACAAAATGCTCTCATCATTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGATAACTGTCCAGTTTGTGGCAAGGGGAAGCTACACTCGCCCTTAGATTCAGACCCAGGAGACACCATGGAAGGACTTTTATATCTGAAGGTTCAAACGCTTGTCTTCTGGGTAGTGATTCCAAATCATGTTAGAGGTGGAATTAGCTTGCCTGTGACCTAG

Coding sequence (CDS)

ATGGTTTGGCTTCTCATTTTACTTCTTCTCAATTTGAGTTTCTTTGATCTTTCTGAGGCTAGGCATCACAGGAAGCTCCCTTCGGCCGTCGTTGTCGGTACCGTCTTCTGCGACACATGCTTTCAAGAGAAATTTTCCAAGACCAGTCACTTCATTTCAGTGGCTGCAACAGCAAAATCATCTTCCCTTCAACTCAAGTCAAAAAAACAAGGCGCACACACATTCTCAGCTGGCTTCTTCACTTTCAAGCCTCTAAAACAACCAAACCTTTGCAACCAAAAGCCTCAATATTCCAACACATTTGATGACATGAAACAAGTCCTCCCCGCGCCCCCACCGTTCGACTTCCCGAGCTTGCCATCTCCTATCCAAAACCCGTCCGTGCCGAACGTTCCTCGGATTTACGATAACCTTCCTCCTCTCCCATTGCTTCCTGGCCTTCTTCCATTGCCTCCATTGCCTCCATTGCCACCACTCCCTCCTCTTCCACCTCTCCCTGGCTTTCCACTGTTCCCACCAAAAAAGAATGATGAAAATAATGTACCAAATGAAATTCCAAACACAAGTGCAAAACAACATCAGTTTCATCCACAGACTTTGCTTCCAATGCCACCCATTAAGCCTTTGAAAAGGCCACATTTTTTTGGTCTGCCTCCACACAGGCTGCACCACCACTACCCTCTCTTGCCTCCATTCTCAACTCATACGGCAGCTGCAGCGGGGGCCGGTTTCTCTGTCCTCCACCCACCACCGAAGATCGTATTCTCTTTCGGTCTTCTCTTCTCTTCTCCCTCCACTTTACTCCTCTCTCAAGCTTGGTTTGCTATTGATATCTTTATGGCATCTCTTTTTCTCATCACCGAAGGAAAGAATCCGGTGTTTTCAGAGGTGATGACATTAGCATTCATCACAGTTGCTTTGAGGATAATCCCTTTGGATCCCCATGTCTTTAACCTTACTGAACATAGGCTGCTAATTTTACAGGAGTTTGGCACAATGGGTGCTGTCTGCTGCTGTTTGAGCGTGGAGGATTTTGAAGACTATGTTAATCCTAATAGTTCAGTATATAGGAATTGCACCTGTCTTAGTTGCTTCATTCAGAGTTTCTTAAATGCATACACATTGATTTTTCGAAGAGGAGAAGTGCATTCTGTCTCTTCATCAATTCAAGGGGCAACATCCATGAATTCCACAGCATCGACAGATAACTCTTTATCTGAAATGTACCGCTCACCTCCAAGGCCATTGCCTTATGATGCTGATCCCAGATATATCCGCTTGCAGCGGGATGGATTAATTTCTAGGCGAGAGAAGGGGTCAAGCCATTTACATGAAGAGTCAGAACCTTTAAGAAGTGATGTGGATACCGATTCAGATTCTTTGGGCTCAGCAGGCAAATGGAATGGTTCTGCTTGTCTTGAGGAATCTAAAGAAAACCTTGGCAAATCATCTCTAAAGTTCCCTTCAACTAAATCTACCACTGGACTTGGGTATTCTTATACATCCTCCGAAGATGAGGATGTCTGTCCAACGTGTCTTGAAGAATATACTTCAGAGAATCCCAAGATAGTGACAAAATGCTCTCATCATTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGATAACTGTCCAGTTTGTGGCAAGGGGAAGCTACACTCGCCCTTAGATTCAGACCCAGGAGACACCATGGAAGGACTTTTATATCTGAAGGTTCAAACGCTTGTCTTCTGGGTAGTGATTCCAAATCATGTTAGAGGTGGAATTAGCTTGCCTGTGACCTAG

Protein sequence

MVWLLILLLLNLSFFDLSEARHHRKLPSAVVVGTVFCDTCFQEKFSKTSHFISVAATAKSSSLQLKSKKQGAHTFSAGFFTFKPLKQPNLCNQKPQYSNTFDDMKQVLPAPPPFDFPSLPSPIQNPSVPNVPRIYDNLPPLPLLPGLLPLPPLPPLPPLPPLPPLPGFPLFPPKKNDENNVPNEIPNTSAKQHQFHPQTLLPMPPIKPLKRPHFFGLPPHRLHHHYPLLPPFSTHTAAAAGAGFSVLHPPPKIVFSFGLLFSSPSTLLLSQAWFAIDIFMASLFLITEGKNPVFSEVMTLAFITVALRIIPLDPHVFNLTEHRLLILQEFGTMGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGATSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRSDVDTDSDSLGSAGKWNGSACLEESKENLGKSSLKFPSTKSTTGLGYSYTSSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKGKLHSPLDSDPGDTMEGLLYLKVQTLVFWVVIPNHVRGGISLPVT
Homology
[Close]
BLAST of Clc11G05340 vs. NCBI nr
Match: XP_008459404.1 (PREDICTED: E3 ubiquitin-protein ligase At3g02290 [Cucumis melo])

HSP 1 Score: 449.5 bits (1155), Expect = 4.5e-122
Identity = 216/219 (98.63%), Postives = 219/219 (100.00%), Query Frame = 0 

Query: 333 MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGA 392
           MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGA
Sbjct: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGA 60

Query: 393 TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 452
           TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS
Sbjct: 61  TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120

Query: 453 DVDTDSDSLGSAGKWNGSACLEESKENLGKSSLKFPSTKSTTGLGYSYTSSEDEDVCPTC 512
           +VDTDSDSLGSAGKWNGSACLEESKENLGKSSLKFPSTKST+GLGY+YTSSEDEDVCPTC
Sbjct: 121 EVDTDSDSLGSAGKWNGSACLEESKENLGKSSLKFPSTKSTSGLGYAYTSSEDEDVCPTC 180

Query: 513 LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGK 552
           LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGK
Sbjct: 181 LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGK 219

[Close]
BLAST of Clc11G05340 vs. NCBI nr
Match: XP_038889911.1 (E3 ubiquitin-protein ligase At3g02290 [Benincasa hispida])

HSP 1 Score: 449.1 bits (1154), Expect = 5.8e-122
Identity = 216/219 (98.63%), Postives = 218/219 (99.54%), Query Frame = 0 

Query: 333 MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGA 392
           MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFL+AYTLIFRRGEVHSVSSSIQG 
Sbjct: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLSAYTLIFRRGEVHSVSSSIQGT 60

Query: 393 TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 452
           TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS
Sbjct: 61  TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120

Query: 453 DVDTDSDSLGSAGKWNGSACLEESKENLGKSSLKFPSTKSTTGLGYSYTSSEDEDVCPTC 512
           DVDTDSDSLGSAGKWNGSACLEESKENLGKSSLKFPSTKSTTGLGY+YTSSEDEDVCPTC
Sbjct: 121 DVDTDSDSLGSAGKWNGSACLEESKENLGKSSLKFPSTKSTTGLGYAYTSSEDEDVCPTC 180

Query: 513 LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGK 552
           LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGK
Sbjct: 181 LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGK 219

[Close]
BLAST of Clc11G05340 vs. NCBI nr
Match: XP_004141476.1 (E3 ubiquitin-protein ligase At3g02290 [Cucumis sativus] >KGN52530.1 hypothetical protein Csa_009250 [Cucumis sativus])

HSP 1 Score: 442.6 bits (1137), Expect = 5.5e-120
Identity = 214/219 (97.72%), Postives = 217/219 (99.09%), Query Frame = 0 

Query: 333 MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGA 392
           MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGA
Sbjct: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGA 60

Query: 393 TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 452
           TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS
Sbjct: 61  TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120

Query: 453 DVDTDSDSLGSAGKWNGSACLEESKENLGKSSLKFPSTKSTTGLGYSYTSSEDEDVCPTC 512
           +VDTDSDSLGS GK NGSACLEESKENLGKSSLKFPSTKST+GLGY+YTSSEDEDVCPTC
Sbjct: 121 EVDTDSDSLGSGGKRNGSACLEESKENLGKSSLKFPSTKSTSGLGYAYTSSEDEDVCPTC 180

Query: 513 LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGK 552
           LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGK
Sbjct: 181 LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGK 219

[Close]
BLAST of Clc11G05340 vs. NCBI nr
Match: KAG7016095.1 (E3 ubiquitin-protein ligase, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 437.2 bits (1123), Expect = 2.3e-118
Identity = 210/222 (94.59%), Postives = 216/222 (97.30%), Query Frame = 0 

Query: 333 MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGA 392
           MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTL+FRRGEVHSVSSSIQGA
Sbjct: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLVFRRGEVHSVSSSIQGA 60

Query: 393 TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 452
           T M+STASTDN LSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHL EESEPLR 
Sbjct: 61  TPMSSTASTDNCLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLQEESEPLRG 120

Query: 453 DVDTDSDSLGSAGKWNGSACLEESKENLGKSSLKFPSTKSTTGLGYSYTSSEDEDVCPTC 512
           DVDTDSDSLGS+GKWNGSACLEESKE LGKSSLKFPSTKSTTG+GY+YTSSEDEDVCPTC
Sbjct: 121 DVDTDSDSLGSSGKWNGSACLEESKEILGKSSLKFPSTKSTTGVGYAYTSSEDEDVCPTC 180

Query: 513 LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKGKL 555
           LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGK +L
Sbjct: 181 LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVRL 222

[Close]
BLAST of Clc11G05340 vs. NCBI nr
Match: KAG6578535.1 (E3 ubiquitin-protein ligase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 436.0 bits (1120), Expect = 5.1e-118
Identity = 209/219 (95.43%), Postives = 214/219 (97.72%), Query Frame = 0 

Query: 333 MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGA 392
           MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTL+FRRGEVHSVSSSIQGA
Sbjct: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLVFRRGEVHSVSSSIQGA 60

Query: 393 TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 452
           T M+STASTDN LSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHL EESEPLR 
Sbjct: 61  TPMSSTASTDNCLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLQEESEPLRG 120

Query: 453 DVDTDSDSLGSAGKWNGSACLEESKENLGKSSLKFPSTKSTTGLGYSYTSSEDEDVCPTC 512
           DVDTDSDSLGS+GKWNGSACLEESKE LGKSSLKFPSTKSTTG+GY+YTSSEDEDVCPTC
Sbjct: 121 DVDTDSDSLGSSGKWNGSACLEESKEILGKSSLKFPSTKSTTGVGYAYTSSEDEDVCPTC 180

Query: 513 LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGK 552
           LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGK
Sbjct: 181 LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGK 219

[Close]
BLAST of Clc11G05340 vs. ExPASy Swiss-Prot
Match: Q8LE94 (E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana OX=3702 GN=At3g02290 PE=2 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.3e-71
Identity = 142/227 (62.56%), Postives = 165/227 (72.69%), Query Frame = 0 

Query: 333 MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGA 392
           MG V  C  VED ++Y+NPNSSVYRNC C+ C   +FLN Y  +FRRGE  S+ SS+Q  
Sbjct: 1   MGCVSSCFRVEDIDEYMNPNSSVYRNCPCIRCLAHNFLNLYISVFRRGETRSLPSSVQAT 60

Query: 393 TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 452
            S+ S++S DN LSE +RS PRPLPYDADPRY R     L+SRREKGSSH HEE EPLRS
Sbjct: 61  ASITSSSSHDNFLSEAFRSTPRPLPYDADPRYFR----SLVSRREKGSSHSHEEVEPLRS 120

Query: 453 DVDTDSDSLGSAG-KW-NGSACL--EESKENL-GKSSLKFPSTKSTTGLGYS---YTSSE 512
           D D DS+S G  G KW N  + L  ++SKE    KSSL+   ++S + +  S   Y  SE
Sbjct: 121 DSDADSESFGVGGCKWANNKSTLSDKDSKEEYSSKSSLRILRSRSKSIMADSENMYILSE 180

Query: 513 DEDVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGK 552
           DEDVCPTCLEEYTSENPKIVTKCSHHFHL CIYEWMERS+NCPVCGK
Sbjct: 181 DEDVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCPVCGK 223

[Close]
BLAST of Clc11G05340 vs. ExPASy Swiss-Prot
Match: Q2HIJ8 (Probable E3 ubiquitin-protein ligase RHB1A OS=Arabidopsis thaliana OX=3702 GN=RHB1A PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.2e-13
Identity = 42/106 (39.62%), Postives = 60/106 (56.60%), Query Frame = 0 

Query: 456 TDSDSLGSAGKWNGSAC-LEESKENLGKSSLKFPSTK---------STTGLGYSYTSSED 515
           TDS+S+   G+ +GS+     + E+LG+S  K  ++           +   G      E+
Sbjct: 78  TDSESI--KGRMSGSSFETLATCEDLGESDCKTLASSVILSPRKSDFSKHQGLKILVDEE 137

Query: 516 EDVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGK 552
           ED CP C E+Y  ENP++ TKC H FHL C+ EW+ERSD CP+C K
Sbjct: 138 EDCCPICFEDYDVENPRLTTKCEHEFHLSCLLEWIERSDRCPICDK 181

[Close]
BLAST of Clc11G05340 vs. ExPASy Swiss-Prot
Match: Q93ZF6 (E3 ubiquitin-protein ligase AIRP1 OS=Arabidopsis thaliana OX=3702 GN=AIRP1 PE=1 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 4.6e-13
Identity = 30/45 (66.67%), Postives = 34/45 (75.56%), Query Frame = 0 

Query: 507 DVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGK 552
           D CP CLEEY  +NPK++TKC H FHL CI  WMERS+ CPVC K
Sbjct: 102 DECPICLEEYEIDNPKLLTKCGHDFHLACILAWMERSEACPVCDK 146

[Close]
BLAST of Clc11G05340 vs. ExPASy TrEMBL
Match: A0A1S3CA28 (E3 ubiquitin-protein ligase At3g02290 OS=Cucumis melo OX=3656 GN=LOC103498549 PE=4 SV=1)

HSP 1 Score: 449.5 bits (1155), Expect = 2.2e-122
Identity = 216/219 (98.63%), Postives = 219/219 (100.00%), Query Frame = 0 

Query: 333 MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGA 392
           MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGA
Sbjct: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGA 60

Query: 393 TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 452
           TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS
Sbjct: 61  TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120

Query: 453 DVDTDSDSLGSAGKWNGSACLEESKENLGKSSLKFPSTKSTTGLGYSYTSSEDEDVCPTC 512
           +VDTDSDSLGSAGKWNGSACLEESKENLGKSSLKFPSTKST+GLGY+YTSSEDEDVCPTC
Sbjct: 121 EVDTDSDSLGSAGKWNGSACLEESKENLGKSSLKFPSTKSTSGLGYAYTSSEDEDVCPTC 180

Query: 513 LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGK 552
           LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGK
Sbjct: 181 LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGK 219

[Close]
BLAST of Clc11G05340 vs. ExPASy TrEMBL
Match: A0A0A0KSH8 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G642120 PE=4 SV=1)

HSP 1 Score: 442.6 bits (1137), Expect = 2.6e-120
Identity = 214/219 (97.72%), Postives = 217/219 (99.09%), Query Frame = 0 

Query: 333 MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGA 392
           MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGA
Sbjct: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGA 60

Query: 393 TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 452
           TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS
Sbjct: 61  TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120

Query: 453 DVDTDSDSLGSAGKWNGSACLEESKENLGKSSLKFPSTKSTTGLGYSYTSSEDEDVCPTC 512
           +VDTDSDSLGS GK NGSACLEESKENLGKSSLKFPSTKST+GLGY+YTSSEDEDVCPTC
Sbjct: 121 EVDTDSDSLGSGGKRNGSACLEESKENLGKSSLKFPSTKSTSGLGYAYTSSEDEDVCPTC 180

Query: 513 LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGK 552
           LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGK
Sbjct: 181 LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGK 219

[Close]
BLAST of Clc11G05340 vs. ExPASy TrEMBL
Match: A0A6J1JX28 (E3 ubiquitin-protein ligase At3g02290-like OS=Cucurbita maxima OX=3661 GN=LOC111489111 PE=4 SV=1)

HSP 1 Score: 433.3 bits (1113), Expect = 1.6e-117
Identity = 208/219 (94.98%), Postives = 213/219 (97.26%), Query Frame = 0 

Query: 333 MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGA 392
           MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTL+FRRGEVHSVSSSIQGA
Sbjct: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLVFRRGEVHSVSSSIQGA 60

Query: 393 TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 452
           T M+STASTDN LSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHL EESEPLR 
Sbjct: 61  TPMSSTASTDNCLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLQEESEPLRG 120

Query: 453 DVDTDSDSLGSAGKWNGSACLEESKENLGKSSLKFPSTKSTTGLGYSYTSSEDEDVCPTC 512
           DVDTDSDSLGS+GKWNGSACLEESKE LGKSSLKFPSTKSTT +GY+YTSSEDEDVCPTC
Sbjct: 121 DVDTDSDSLGSSGKWNGSACLEESKEILGKSSLKFPSTKSTTDVGYAYTSSEDEDVCPTC 180

Query: 513 LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGK 552
           LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGK
Sbjct: 181 LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGK 219

[Close]
BLAST of Clc11G05340 vs. ExPASy TrEMBL
Match: A0A6J1BYQ7 (E3 ubiquitin-protein ligase At3g02290 OS=Momordica charantia OX=3673 GN=LOC111006466 PE=4 SV=1)

HSP 1 Score: 433.3 bits (1113), Expect = 1.6e-117
Identity = 205/219 (93.61%), Postives = 215/219 (98.17%), Query Frame = 0 

Query: 333 MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGA 392
           MGAVCCCLSVED+EDYVNPNSS+YRNCTCLSCFIQ+FLNAYTLIFRRGEVHSVSSSIQG 
Sbjct: 1   MGAVCCCLSVEDYEDYVNPNSSLYRNCTCLSCFIQNFLNAYTLIFRRGEVHSVSSSIQGT 60

Query: 393 TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 452
           TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS
Sbjct: 61  TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120

Query: 453 DVDTDSDSLGSAGKWNGSACLEESKENLGKSSLKFPSTKSTTGLGYSYTSSEDEDVCPTC 512
           +VD DSDSL + GKWNGSACL+ESKENLGKSSLKFPSTKSTTG+GY+YTSSEDEDVCPTC
Sbjct: 121 EVDADSDSLDTPGKWNGSACLDESKENLGKSSLKFPSTKSTTGVGYAYTSSEDEDVCPTC 180

Query: 513 LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGK 552
           LEEYTSENPKI+T+CSHHFHLGCIYEWMERSDNCPVCGK
Sbjct: 181 LEEYTSENPKIMTQCSHHFHLGCIYEWMERSDNCPVCGK 219

[Close]
BLAST of Clc11G05340 vs. ExPASy TrEMBL
Match: A0A6J1FHB6 (E3 ubiquitin-protein ligase At3g02290-like OS=Cucurbita moschata OX=3662 GN=LOC111445459 PE=4 SV=1)

HSP 1 Score: 433.3 bits (1113), Expect = 1.6e-117
Identity = 208/219 (94.98%), Postives = 213/219 (97.26%), Query Frame = 0 

Query: 333 MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGA 392
           MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTL+FRRGEVHSVSSSIQGA
Sbjct: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLVFRRGEVHSVSSSIQGA 60

Query: 393 TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 452
           T M+STASTDN LSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHL EESEPLR 
Sbjct: 61  TPMSSTASTDNCLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLQEESEPLRG 120

Query: 453 DVDTDSDSLGSAGKWNGSACLEESKENLGKSSLKFPSTKSTTGLGYSYTSSEDEDVCPTC 512
           DVDTDSDSLGS+GKWNGSACLEESKE LGKSSLKFPSTKSTT +GY+YTSSEDEDVCPTC
Sbjct: 121 DVDTDSDSLGSSGKWNGSACLEESKEILGKSSLKFPSTKSTTDVGYAYTSSEDEDVCPTC 180

Query: 513 LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGK 552
           LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGK
Sbjct: 181 LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGK 219

[Close]
BLAST of Clc11G05340 vs. TAIR 10
Match: AT3G02290.1 (RING/U-box superfamily protein )

HSP 1 Score: 272.3 bits (695), Expect = 9.1e-73
Identity = 142/227 (62.56%), Postives = 165/227 (72.69%), Query Frame = 0 

Query: 333 MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGA 392
           MG V  C  VED ++Y+NPNSSVYRNC C+ C   +FLN Y  +FRRGE  S+ SS+Q  
Sbjct: 1   MGCVSSCFRVEDIDEYMNPNSSVYRNCPCIRCLAHNFLNLYISVFRRGETRSLPSSVQAT 60

Query: 393 TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 452
            S+ S++S DN LSE +RS PRPLPYDADPRY R     L+SRREKGSSH HEE EPLRS
Sbjct: 61  ASITSSSSHDNFLSEAFRSTPRPLPYDADPRYFR----SLVSRREKGSSHSHEEVEPLRS 120

Query: 453 DVDTDSDSLGSAG-KW-NGSACL--EESKENL-GKSSLKFPSTKSTTGLGYS---YTSSE 512
           D D DS+S G  G KW N  + L  ++SKE    KSSL+   ++S + +  S   Y  SE
Sbjct: 121 DSDADSESFGVGGCKWANNKSTLSDKDSKEEYSSKSSLRILRSRSKSIMADSENMYILSE 180

Query: 513 DEDVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGK 552
           DEDVCPTCLEEYTSENPKIVTKCSHHFHL CIYEWMERS+NCPVCGK
Sbjct: 181 DEDVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCPVCGK 223

[Close]
BLAST of Clc11G05340 vs. TAIR 10
Match: AT5G38895.3 (RING/U-box superfamily protein )

HSP 1 Score: 265.8 bits (678), Expect = 8.5e-71
Identity = 126/224 (56.25%), Postives = 157/224 (70.09%), Query Frame = 0 

Query: 329 EFGTMGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSS 388
           +F  MGA CCC  V+ FE YVNPN+S+ RNC CL+CF+QSF++ Y  +F RG +H + S+
Sbjct: 102 DFEDMGAFCCCFQVDLFESYVNPNTSITRNCPCLNCFLQSFMDLYASLFSRGGMHPIPST 161

Query: 389 IQGATSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESE 448
           ++ AT MNST + D+SLS +Y SPP PLPYDADPRY R           KGSSH  EESE
Sbjct: 162 VETATVMNSTTALDDSLSSVYHSPPTPLPYDADPRYFRF---------VKGSSHSGEESE 221

Query: 449 PLRSDVDTDSDSLGSAG-KWNGSACLEESKENLGKSSLKFPSTKSTTGLGYSYTSSEDED 508
           PLR D +  S++LG  G KW+ S   + SKE   K S  F  +K+  G+   Y  S+DED
Sbjct: 222 PLRGDTEMSSEALGDGGAKWSKSDSEDGSKEVYTKGSSTFTKSKTMPGIEVYYADSDDED 281

Query: 509 VCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGK 552
           +CPTCL++YT ENPKI+TKCSHHFHL CIYEWMERS+ CPVCGK
Sbjct: 282 ICPTCLDDYTLENPKIITKCSHHFHLSCIYEWMERSETCPVCGK 316

[Close]
BLAST of Clc11G05340 vs. TAIR 10
Match: AT5G38895.2 (RING/U-box superfamily protein )

HSP 1 Score: 265.8 bits (678), Expect = 8.5e-71
Identity = 126/224 (56.25%), Postives = 157/224 (70.09%), Query Frame = 0 

Query: 329 EFGTMGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSS 388
           +F  MGA CCC  V+ FE YVNPN+S+ RNC CL+CF+QSF++ Y  +F RG +H + S+
Sbjct: 72  DFEDMGAFCCCFQVDLFESYVNPNTSITRNCPCLNCFLQSFMDLYASLFSRGGMHPIPST 131

Query: 389 IQGATSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESE 448
           ++ AT MNST + D+SLS +Y SPP PLPYDADPRY R           KGSSH  EESE
Sbjct: 132 VETATVMNSTTALDDSLSSVYHSPPTPLPYDADPRYFRF---------VKGSSHSGEESE 191

Query: 449 PLRSDVDTDSDSLGSAG-KWNGSACLEESKENLGKSSLKFPSTKSTTGLGYSYTSSEDED 508
           PLR D +  S++LG  G KW+ S   + SKE   K S  F  +K+  G+   Y  S+DED
Sbjct: 192 PLRGDTEMSSEALGDGGAKWSKSDSEDGSKEVYTKGSSTFTKSKTMPGIEVYYADSDDED 251

Query: 509 VCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGK 552
           +CPTCL++YT ENPKI+TKCSHHFHL CIYEWMERS+ CPVCGK
Sbjct: 252 ICPTCLDDYTLENPKIITKCSHHFHLSCIYEWMERSETCPVCGK 286

[Close]
BLAST of Clc11G05340 vs. TAIR 10
Match: AT5G15790.1 (RING/U-box superfamily protein )

HSP 1 Score: 264.2 bits (674), Expect = 2.5e-70
Identity = 134/225 (59.56%), Postives = 160/225 (71.11%), Query Frame = 0 

Query: 333 MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGA 392
           MG V  C  V+DFEDY NP+SSV R+C C  C + +FLN Y  +FRRGE  S+ SS+Q  
Sbjct: 1   MGCVSSCFGVDDFEDYPNPSSSVNRSCPCPRCLVNNFLNLYISLFRRGETRSLPSSLQAT 60

Query: 393 -TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLR 452
             S+ ++ S DN +S  + S PRPLPYDADPRY R +RD L+SRR+KGSSH HEE+EPLR
Sbjct: 61  NVSIATSTSYDNFMSNTFHSTPRPLPYDADPRYFRSRRDSLVSRRDKGSSHSHEEAEPLR 120

Query: 453 SDVDTDSDSLGSAG-KWNGSACL--EESKENLGKSSLKF--PSTKSTTGLGYSYTSSEDE 512
           SD D DS+S    G KW     +  E+SKE   +SS +     T ST+  G  Y +S+DE
Sbjct: 121 SDADVDSESFSVEGSKWANKLIISGEDSKEEFSRSSRRILQSRTMSTSNEGL-YITSDDE 180

Query: 513 DVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGK 552
           DVCPTCLEEY SENPKIVTKCSHHFHL CIYEWMERS+NCPVCGK
Sbjct: 181 DVCPTCLEEYISENPKIVTKCSHHFHLSCIYEWMERSENCPVCGK 224

[Close]
BLAST of Clc11G05340 vs. TAIR 10
Match: AT5G15790.2 (RING/U-box superfamily protein )

HSP 1 Score: 264.2 bits (674), Expect = 2.5e-70
Identity = 134/225 (59.56%), Postives = 160/225 (71.11%), Query Frame = 0 

Query: 333 MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGA 392
           MG V  C  V+DFEDY NP+SSV R+C C  C + +FLN Y  +FRRGE  S+ SS+Q  
Sbjct: 1   MGCVSSCFGVDDFEDYPNPSSSVNRSCPCPRCLVNNFLNLYISLFRRGETRSLPSSLQAT 60

Query: 393 -TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLR 452
             S+ ++ S DN +S  + S PRPLPYDADPRY R +RD L+SRR+KGSSH HEE+EPLR
Sbjct: 61  NVSIATSTSYDNFMSNTFHSTPRPLPYDADPRYFRSRRDSLVSRRDKGSSHSHEEAEPLR 120

Query: 453 SDVDTDSDSLGSAG-KWNGSACL--EESKENLGKSSLKF--PSTKSTTGLGYSYTSSEDE 512
           SD D DS+S    G KW     +  E+SKE   +SS +     T ST+  G  Y +S+DE
Sbjct: 121 SDADVDSESFSVEGSKWANKLIISGEDSKEEFSRSSRRILQSRTMSTSNEGL-YITSDDE 180

Query: 513 DVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGK 552
           DVCPTCLEEY SENPKIVTKCSHHFHL CIYEWMERS+NCPVCGK
Sbjct: 181 DVCPTCLEEYISENPKIVTKCSHHFHLSCIYEWMERSENCPVCGK 224

The following BLAST results are available for this feature:
BLAST of Clc11G05340 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008459404.14.5e-12298.63PREDICTED: E3 ubiquitin-protein ligase At3g02290 [Cucumis melo][more]
XP_038889911.15.8e-12298.63E3 ubiquitin-protein ligase At3g02290 [Benincasa hispida][more]
XP_004141476.15.5e-12097.72E3 ubiquitin-protein ligase At3g02290 [Cucumis sativus] >KGN52530.1 hypothetical... [more]
KAG7016095.12.3e-11894.59E3 ubiquitin-protein ligase, partial [Cucurbita argyrosperma subsp. argyrosperma... [more]
KAG6578535.15.1e-11895.43E3 ubiquitin-protein ligase, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of Clc11G05340 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8LE941.3e-7162.56E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana OX=3702 GN=At3g022... [more]
Q2HIJ81.2e-1339.62Probable E3 ubiquitin-protein ligase RHB1A OS=Arabidopsis thaliana OX=3702 GN=RH... [more]
Q93ZF64.6e-1366.67E3 ubiquitin-protein ligase AIRP1 OS=Arabidopsis thaliana OX=3702 GN=AIRP1 PE=1 ... [more]
BLAST of Clc11G05340 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3CA282.2e-12298.63E3 ubiquitin-protein ligase At3g02290 OS=Cucumis melo OX=3656 GN=LOC103498549 PE... [more]
A0A0A0KSH82.6e-12097.72RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G642120 P... [more]
A0A6J1JX281.6e-11794.98E3 ubiquitin-protein ligase At3g02290-like OS=Cucurbita maxima OX=3661 GN=LOC111... [more]
A0A6J1BYQ71.6e-11793.61E3 ubiquitin-protein ligase At3g02290 OS=Momordica charantia OX=3673 GN=LOC11100... [more]
A0A6J1FHB61.6e-11794.98E3 ubiquitin-protein ligase At3g02290-like OS=Cucurbita moschata OX=3662 GN=LOC1... [more]
BLAST of Clc11G05340 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G02290.19.1e-7362.56RING/U-box superfamily protein [more]
AT5G38895.38.5e-7156.25RING/U-box superfamily protein [more]
AT5G38895.28.5e-7156.25RING/U-box superfamily protein [more]
AT5G15790.12.5e-7059.56RING/U-box superfamily protein [more]
AT5G15790.22.5e-7059.56RING/U-box superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 509..549
e-value: 1.4E-6
score: 37.8
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 508..549
e-value: 1.7E-10
score: 41.0
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 509..549
score: 12.002429
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 489..553
e-value: 7.1E-15
score: 56.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 435..455
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 388..421
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 435..461
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 388..408
NoneNo IPR availablePANTHERPTHR46463ZINC FINGER, RING/FYVE/PHD-TYPEcoord: 333..551
NoneNo IPR availablePANTHERPTHR46463:SF43TRANSCRIPTION FACTOR C2H2 FAMILY-RELATEDcoord: 333..551
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 503..551

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc11G05340.2Clc11G05340.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016567 protein ubiquitination
molecular_function GO:0004842 ubiquitin-protein transferase activity
molecular_function GO:0008270 zinc ion binding