Clc11G05090 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGGTCCTGGACAACTTTTCCAAAATAAAGAAACAGAAAGTGTTTTTAAGTAAAACATTTTTGTCTCTTCAGTATTATAATATTTAATCTATAAAAATCATTTTTAGTCCCTAATCTATCAACTTCGGTTTATAATGATTTAGTTATTGTACTTTTAATTTAGTAGCAATTTAGGTCATAAACATCACTATGTAACAATTTAACGCTTATACTTTAAAATTTGTAACGATTTAATCTCTATCGTAAAAATTAGTGTTAAGATTTAATGAAATTTTCTGTATAAATAAACCAATAAATAAATTAGAAAATTCAATATTTTTATATAATACAAAATCTACATCTAATTTTGATGAATTTTGAATTTTTTTCAAATTTGAAAGTAAAAAAATCATATTGTTACGTACTAAAATTTAGAAATTATAATAAAATTGAAAGTAAATAGTTACCAACCAAATTTATTAAATTGTTAAAATTTTAGAGAACAAATATATTTTTTTAACTAAAATAAAAAAAAAATGTATATGTATAATTACGCTGATGTAATTAGAGAGAAATGGCAAAACGGTAATAAAGGTGAAGTAAGGGGGCAAAGAGTTAGCGTACTGTTACTTAAAGTAAGGTTTCTCCGAGTAATTGGAGACAAACAAGACAAGCAATGAGCTCCAAAACCAACACACTCCCAAATCCTCTCAGAAATTACCTTAGAAGAAGAACCAAACGATCTTTAACCGATTCCCGCCGTCGCTCCCACCGCCGTCACTGCCCCGCCCTCCGCTCTAACAATGGAAGCCGGCGGGATACGACCCCCACATCGCCCTGTGGCTCCGACGTCTCCGCCAAACTGGATGCCCTCCAGACCCTCATTCCGCCCCAATCCAACGCCCAACCCCGCCAAACGGATCAGTTGTTCAAGGAAACTGCCGATTACATTGTTCTTTTGAAAACCCGGGTCGTCATTTTGCAGAAGCTGGTTGAGTTTTTTGGATCCGCCTGCACCGACTCTCAAAACGCCGTCGTTTCATAGCTCTCTCTCTCTCTCTTCTTTTTCTTTTTACTTCTTGTAATTACGAGGAAACAAAAAAATAAATAGATCGAGAAGAATGAAATTAAAAGAAAAACAGAAAAAAAAAAAAAAAATATTGAAAGAAAGACGTCATGTGGTCTTCTTTCTTCCCTTGGTCATGTTAATTCCCTTATTAGTCAACCCACATGAGATGATGGATAGTAGAAATTTTATGCTAATCGTTTTGGTGTACTTTTAATTGAGTTCTCTTTTGTTAGATTAGAAAGTGA ATGGGGTATAATTACGCTGATGTAATTAGAGAGAAATGGCAAAACGGTAATAAAGGTGAAGTAAGGGGGCAAAGAGTTAGCGTACTGTTACTTAAAGTTTCTCCGAGTAATTGGAGACAAACAAGACAAGCAATGAGCTCCAAAACCAACACACTCCCAAATCCTCTCAGAAATTACCTTAGAAGAAGAACCAAACGATCTTTAACCGATTCCCGCCGTCGCTCCCACCGCCGTCACTGCCCCGCCCTCCGCTCTAACAATGGAAGCCGGCGGGATACGACCCCCACATCGCCCTGTGGCTCCGACGTCTCCGCCAAACTGGATGCCCTCCAGACCCTCATTCCGCCCCAATCCAACGCCCAACCCCGCCAAACGGATCAGTTGTTCAAGGAAACTGCCGATTACATTGTTCTTTTGAAAACCCGGGTCATTAGAAAGTGA ATGGGGTATAATTACGCTGATGTAATTAGAGAGAAATGGCAAAACGGTAATAAAGGTGAAGTAAGGGGGCAAAGAGTTAGCGTACTGTTACTTAAAGTTTCTCCGAGTAATTGGAGACAAACAAGACAAGCAATGAGCTCCAAAACCAACACACTCCCAAATCCTCTCAGAAATTACCTTAGAAGAAGAACCAAACGATCTTTAACCGATTCCCGCCGTCGCTCCCACCGCCGTCACTGCCCCGCCCTCCGCTCTAACAATGGAAGCCGGCGGGATACGACCCCCACATCGCCCTGTGGCTCCGACGTCTCCGCCAAACTGGATGCCCTCCAGACCCTCATTCCGCCCCAATCCAACGCCCAACCCCGCCAAACGGATCAGTTGTTCAAGGAAACTGCCGATTACATTGTTCTTTTGAAAACCCGGGTCATTAGAAAGTGA MGYNYADVIREKWQNGNKGEVRGQRVSVLLLKVSPSNWRQTRQAMSSKTNTLPNPLRNYLRRRTKRSLTDSRRRSHRRHCPALRSNNGSRRDTTPTSPCGSDVSAKLDALQTLIPPQSNAQPRQTDQLFKETADYIVLLKTRVIRK Homology
BLAST of Clc11G05090 vs. NCBI nr
Match: KAA0039441.1 (transcription factor UPBEAT1-like [Cucumis melo var. makuwa] >TYK00630.1 transcription factor UPBEAT1-like [Cucumis melo var. makuwa]) HSP 1 Score: 111.3 bits (277), Expect = 7.1e-21 Identity = 69/103 (66.99%), Postives = 77/103 (74.76%), Query Frame = 0
BLAST of Clc11G05090 vs. NCBI nr
Match: KAG6578552.1 (hypothetical protein SDJN03_23000, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 96.3 bits (238), Expect = 2.4e-16 Identity = 64/104 (61.54%), Postives = 74/104 (71.15%), Query Frame = 0
BLAST of Clc11G05090 vs. NCBI nr
Match: KAG7016112.1 (hypothetical protein SDJN02_21216, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 96.3 bits (238), Expect = 2.4e-16 Identity = 64/104 (61.54%), Postives = 74/104 (71.15%), Query Frame = 0
BLAST of Clc11G05090 vs. NCBI nr
Match: XP_022993697.1 (uncharacterized protein LOC111489609 [Cucurbita maxima]) HSP 1 Score: 76.6 bits (187), Expect = 1.9e-10 Identity = 58/108 (53.70%), Postives = 68/108 (62.96%), Query Frame = 0
BLAST of Clc11G05090 vs. NCBI nr
Match: KAG7986517.1 (hypothetical protein I3843_03G085300 [Carya illinoinensis]) HSP 1 Score: 59.3 bits (142), Expect = 3.2e-05 Identity = 45/93 (48.39%), Postives = 59/93 (63.44%), Query Frame = 0
BLAST of Clc11G05090 vs. ExPASy TrEMBL
Match: A0A5D3BNP5 (Transcription factor UPBEAT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002510 PE=4 SV=1) HSP 1 Score: 111.3 bits (277), Expect = 3.4e-21 Identity = 69/103 (66.99%), Postives = 77/103 (74.76%), Query Frame = 0
BLAST of Clc11G05090 vs. ExPASy TrEMBL
Match: A0A6J1JTK8 (uncharacterized protein LOC111489609 OS=Cucurbita maxima OX=3661 GN=LOC111489609 PE=4 SV=1) HSP 1 Score: 76.6 bits (187), Expect = 9.3e-11 Identity = 58/108 (53.70%), Postives = 68/108 (62.96%), Query Frame = 0
BLAST of Clc11G05090 vs. ExPASy TrEMBL
Match: A0A5N6QW57 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007655 PE=4 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 1.3e-04 Identity = 46/92 (50.00%), Postives = 57/92 (61.96%), Query Frame = 0
BLAST of Clc11G05090 vs. ExPASy TrEMBL
Match: A0A314YX88 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_32000 PE=4 SV=1) HSP 1 Score: 55.5 bits (132), Expect = 2.2e-04 Identity = 48/103 (46.60%), Postives = 61/103 (59.22%), Query Frame = 0
BLAST of Clc11G05090 vs. ExPASy TrEMBL
Match: A0A6A4M9E9 (Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_01470 PE=4 SV=1) HSP 1 Score: 55.5 bits (132), Expect = 2.2e-04 Identity = 39/80 (48.75%), Postives = 48/80 (60.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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