Clc11G05090 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G05090
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Transcription factor UPBEAT1-like
Location	ClcChr11: 4906838 .. 4908132 (+)
RNA-Seq Expression	Clc11G05090
Synteny	Clc11G05090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTCCTGGACAACTTTTCCAAAATAAAGAAACAGAAAGTGTTTTTAAGTAAAACATTTTTGTCTCTTCAGTATTATAATATTTAATCTATAAAAATCATTTTTAGTCCCTAATCTATCAACTTCGGTTTATAATGATTTAGTTATTGTACTTTTAATTTAGTAGCAATTTAGGTCATAAACATCACTATGTAACAATTTAACGCTTATACTTTAAAATTTGTAACGATTTAATCTCTATCGTAAAAATTAGTGTTAAGATTTAATGAAATTTTCTGTATAAATAAACCAATAAATAAATTAGAAAATTCAATATTTTTATATAATACAAAATCTACATCTAATTTTGATGAATTTTGAATTTTTTTCAAATTTGAAAGTAAAAAAATCATATTGTTACGTACTAAAATTTAGAAATTATAATAAAATTGAAAGTAAATAGTTACCAACCAAATTTATTAAATTGTTAAAATTTTAGAGAACAAATATATTTTTTTAACTAAAATAAAAAAAAAATGTATATGTATAATTACGCTGATGTAATTAGAGAGAAATGGCAAAACGGTAATAAAGGTGAAGTAAGGGGGCAAAGAGTTAGCGTACTGTTACTTAAAGTAAGGTTTCTCCGAGTAATTGGAGACAAACAAGACAAGCAATGAGCTCCAAAACCAACACACTCCCAAATCCTCTCAGAAATTACCTTAGAAGAAGAACCAAACGATCTTTAACCGATTCCCGCCGTCGCTCCCACCGCCGTCACTGCCCCGCCCTCCGCTCTAACAATGGAAGCCGGCGGGATACGACCCCCACATCGCCCTGTGGCTCCGACGTCTCCGCCAAACTGGATGCCCTCCAGACCCTCATTCCGCCCCAATCCAACGCCCAACCCCGCCAAACGGATCAGTTGTTCAAGGAAACTGCCGATTACATTGTTCTTTTGAAAACCCGGGTCGTCATTTTGCAGAAGCTGGTTGAGTTTTTTGGATCCGCCTGCACCGACTCTCAAAACGCCGTCGTTTCATAGCTCTCTCTCTCTCTCTTCTTTTTCTTTTTACTTCTTGTAATTACGAGGAAACAAAAAAATAAATAGATCGAGAAGAATGAAATTAAAAGAAAAACAGAAAAAAAAAAAAAAAATATTGAAAGAAAGACGTCATGTGGTCTTCTTTCTTCCCTTGGTCATGTTAATTCCCTTATTAGTCAACCCACATGAGATGATGGATAGTAGAAATTTTATGCTAATCGTTTTGGTGTACTTTTAATTGAGTTCTCTTTTGTTAGATTAGAAAGTGA

mRNA sequence

ATGGGGTATAATTACGCTGATGTAATTAGAGAGAAATGGCAAAACGGTAATAAAGGTGAAGTAAGGGGGCAAAGAGTTAGCGTACTGTTACTTAAAGTTTCTCCGAGTAATTGGAGACAAACAAGACAAGCAATGAGCTCCAAAACCAACACACTCCCAAATCCTCTCAGAAATTACCTTAGAAGAAGAACCAAACGATCTTTAACCGATTCCCGCCGTCGCTCCCACCGCCGTCACTGCCCCGCCCTCCGCTCTAACAATGGAAGCCGGCGGGATACGACCCCCACATCGCCCTGTGGCTCCGACGTCTCCGCCAAACTGGATGCCCTCCAGACCCTCATTCCGCCCCAATCCAACGCCCAACCCCGCCAAACGGATCAGTTGTTCAAGGAAACTGCCGATTACATTGTTCTTTTGAAAACCCGGGTCATTAGAAAGTGA

Coding sequence (CDS)

ATGGGGTATAATTACGCTGATGTAATTAGAGAGAAATGGCAAAACGGTAATAAAGGTGAAGTAAGGGGGCAAAGAGTTAGCGTACTGTTACTTAAAGTTTCTCCGAGTAATTGGAGACAAACAAGACAAGCAATGAGCTCCAAAACCAACACACTCCCAAATCCTCTCAGAAATTACCTTAGAAGAAGAACCAAACGATCTTTAACCGATTCCCGCCGTCGCTCCCACCGCCGTCACTGCCCCGCCCTCCGCTCTAACAATGGAAGCCGGCGGGATACGACCCCCACATCGCCCTGTGGCTCCGACGTCTCCGCCAAACTGGATGCCCTCCAGACCCTCATTCCGCCCCAATCCAACGCCCAACCCCGCCAAACGGATCAGTTGTTCAAGGAAACTGCCGATTACATTGTTCTTTTGAAAACCCGGGTCATTAGAAAGTGA

Protein sequence

MGYNYADVIREKWQNGNKGEVRGQRVSVLLLKVSPSNWRQTRQAMSSKTNTLPNPLRNYLRRRTKRSLTDSRRRSHRRHCPALRSNNGSRRDTTPTSPCGSDVSAKLDALQTLIPPQSNAQPRQTDQLFKETADYIVLLKTRVIRK

Homology

[Close]

BLAST of Clc11G05090 vs. NCBI nr
Match: KAA0039441.1 (transcription factor UPBEAT1-like [Cucumis melo var. makuwa] >TYK00630.1 transcription factor UPBEAT1-like [Cucumis melo var. makuwa])

HSP 1 Score: 111.3 bits (277), Expect = 7.1e-21
Identity = 69/103 (66.99%), Postives = 77/103 (74.76%), Query Frame = 0


Query: 45  MSSKTNTLPNPLRNYLRRRTKRSLTDSRRRSHRRHCPALRSNNGSRRDTTPTSPCGSDVS 104
           MSSKTNTLPNPLRNY RRRTKRSLT SRRR HRRH       N   R    T  C S+VS
Sbjct: 1   MSSKTNTLPNPLRNYRRRRTKRSLTHSRRRFHRRH-------NAGCRPGDSTLGC-SEVS 60

Query: 105 AKLDALQTLIPPQSNA---QPRQTDQLFKETADYIVLLKTRVI 145
            KL+ALQ+LIPPQS A   QPRQ D+LFK+TADYIV+LKT+V+
Sbjct: 61  TKLEALQSLIPPQSAAGHGQPRQADELFKDTADYIVVLKTQVV 95

[Close]

BLAST of Clc11G05090 vs. NCBI nr
Match: KAG6578552.1 (hypothetical protein SDJN03_23000, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 96.3 bits (238), Expect = 2.4e-16
Identity = 64/104 (61.54%), Postives = 74/104 (71.15%), Query Frame = 0


Query: 45  MSSKTNTLPNPLRNYLRRRTKRSLTDSRRRSHRRHCPALRS----NNGSRRDTTPTSPCG 104
           MS KTNTL N     LR  TKRSL DSRRR HRRH  A+R+     NG    ++P S   
Sbjct: 1   MSPKTNTLTN-----LRTTTKRSLPDSRRRFHRRHYSAVRAPNPHENGQTTSSSPFSDDD 60

Query: 105 SDVSAKLDALQTLIPPQSNAQPRQTDQLFKETADYIVLLKTRVI 145
            DVSAKL+ALQ+LIP QS A+ RQT+QLFKETADYIVLLKT+V+
Sbjct: 61  DDVSAKLEALQSLIPAQS-AEGRQTEQLFKETADYIVLLKTQVV 98

[Close]

BLAST of Clc11G05090 vs. NCBI nr
Match: KAG7016112.1 (hypothetical protein SDJN02_21216, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 96.3 bits (238), Expect = 2.4e-16
Identity = 64/104 (61.54%), Postives = 74/104 (71.15%), Query Frame = 0


Query: 45  MSSKTNTLPNPLRNYLRRRTKRSLTDSRRRSHRRHCPALRS----NNGSRRDTTPTSPCG 104
           MS KTNTL N     LR  TKRSL DSRRR HRRH  A+R+     NG    ++P S   
Sbjct: 1   MSPKTNTLTN-----LRTTTKRSLPDSRRRFHRRHYSAVRAPNPHENGETTSSSPFSDDD 60

Query: 105 SDVSAKLDALQTLIPPQSNAQPRQTDQLFKETADYIVLLKTRVI 145
            DVSAKL+ALQ+LIP QS A+ RQT+QLFKETADYIVLLKT+V+
Sbjct: 61  DDVSAKLEALQSLIPAQS-AEGRQTEQLFKETADYIVLLKTQVV 98

[Close]

BLAST of Clc11G05090 vs. NCBI nr
Match: XP_022993697.1 (uncharacterized protein LOC111489609 [Cucurbita maxima])

HSP 1 Score: 76.6 bits (187), Expect = 1.9e-10
Identity = 58/108 (53.70%), Postives = 68/108 (62.96%), Query Frame = 0


Query: 45  MSSKTNTLPNPLRNYLRRRTKRSLTDSRRRSHRRHCPALRSNNGSRRDTTPTSPCGS--- 104
           M+ KT TL N     LR RTKRSL DS  R+   H            +TT +SPC S   
Sbjct: 1   MTPKTYTLTN-----LRTRTKRSLPDSAVRAPNPH---------EYGETTSSSPCSSSSD 60

Query: 105 -----DVSAKLDALQTLIPPQSNAQPRQTDQLFKETADYIVLLKTRVI 145
                DVSAKL+ALQ+LIP QS A+ RQT+QLFKETADYIVLLKT+V+
Sbjct: 61  DDDDDDVSAKLEALQSLIPAQS-AEARQTEQLFKETADYIVLLKTQVV 93

[Close]

BLAST of Clc11G05090 vs. NCBI nr
Match: KAG7986517.1 (hypothetical protein I3843_03G085300 [Carya illinoinensis])

HSP 1 Score: 59.3 bits (142), Expect = 3.2e-05
Identity = 45/93 (48.39%), Postives = 59/93 (63.44%), Query Frame = 0


Query: 57  RNYLRRRTKRSL--TDSRRRSHRRHCPALRS--NNGSRRDTTPTSPCGSDVSAKLDALQT 116
           + +LRR  +R +  T SRRR H R C   RS  NNG R        C S+VS KL+AL+ 
Sbjct: 11  KTFLRRTRRRQIGRTSSRRRLHARSCRDRRSCFNNGGR-------TC-SEVSGKLEALKN 70

Query: 117 LIPPQSN-AQPRQTDQLFKETADYIVLLKTRVI 145
           LIP   N A+  + DQLF+ETA+YI+LL+TRV+
Sbjct: 71  LIPAGGNGAEIIKPDQLFQETAEYIILLRTRVV 95

[Close]

BLAST of Clc11G05090 vs. ExPASy TrEMBL
Match: A0A5D3BNP5 (Transcription factor UPBEAT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002510 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 3.4e-21
Identity = 69/103 (66.99%), Postives = 77/103 (74.76%), Query Frame = 0


Query: 45  MSSKTNTLPNPLRNYLRRRTKRSLTDSRRRSHRRHCPALRSNNGSRRDTTPTSPCGSDVS 104
           MSSKTNTLPNPLRNY RRRTKRSLT SRRR HRRH       N   R    T  C S+VS
Sbjct: 1   MSSKTNTLPNPLRNYRRRRTKRSLTHSRRRFHRRH-------NAGCRPGDSTLGC-SEVS 60

Query: 105 AKLDALQTLIPPQSNA---QPRQTDQLFKETADYIVLLKTRVI 145
            KL+ALQ+LIPPQS A   QPRQ D+LFK+TADYIV+LKT+V+
Sbjct: 61  TKLEALQSLIPPQSAAGHGQPRQADELFKDTADYIVVLKTQVV 95

[Close]

BLAST of Clc11G05090 vs. ExPASy TrEMBL
Match: A0A6J1JTK8 (uncharacterized protein LOC111489609 OS=Cucurbita maxima OX=3661 GN=LOC111489609 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 9.3e-11
Identity = 58/108 (53.70%), Postives = 68/108 (62.96%), Query Frame = 0


Query: 45  MSSKTNTLPNPLRNYLRRRTKRSLTDSRRRSHRRHCPALRSNNGSRRDTTPTSPCGS--- 104
           M+ KT TL N     LR RTKRSL DS  R+   H            +TT +SPC S   
Sbjct: 1   MTPKTYTLTN-----LRTRTKRSLPDSAVRAPNPH---------EYGETTSSSPCSSSSD 60

Query: 105 -----DVSAKLDALQTLIPPQSNAQPRQTDQLFKETADYIVLLKTRVI 145
                DVSAKL+ALQ+LIP QS A+ RQT+QLFKETADYIVLLKT+V+
Sbjct: 61  DDDDDDVSAKLEALQSLIPAQS-AEARQTEQLFKETADYIVLLKTQVV 93

[Close]

BLAST of Clc11G05090 vs. ExPASy TrEMBL
Match: A0A5N6QW57 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007655 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.3e-04
Identity = 46/92 (50.00%), Postives = 57/92 (61.96%), Query Frame = 0


Query: 57  RNYLRRRTKRSL---TDSRRRSHRRHCPALRS-NNGSRRDTTPTSPCGSDVSAKLDALQT 116
           R  L RRT+R L   T +RRR   R C A RS NNG R        C + VS KL+AL+ 
Sbjct: 8   RKALLRRTRRKLTRRTSTRRRLQARPCRARRSFNNGGR-------TC-AKVSDKLEALKN 67

Query: 117 LIPPQSNAQPRQTDQLFKETADYIVLLKTRVI 145
           LIP   N +  + DQLFKETA+YIVLL+T+V+
Sbjct: 68  LIPAH-NGETVKPDQLFKETAEYIVLLRTQVV 90

[Close]

BLAST of Clc11G05090 vs. ExPASy TrEMBL
Match: A0A314YX88 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_32000 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.2e-04
Identity = 48/103 (46.60%), Postives = 61/103 (59.22%), Query Frame = 0


Query: 45  MSSKTNTLPNPLRNYLRRRTKRSLTDSRRRSHRRHCPALRS--NNGSRRDTTPTSPCGS- 104
           MSS    L   L    RRRT+R  T SRRR   R C A R   NNG R+     S C S 
Sbjct: 1   MSSAPGNLKASLAG--RRRTRR--TSSRRRLGSRACGAPRRSFNNGGRK-----SKCSSK 60

Query: 105 DVSAKLDALQTLIPPQSNAQPRQTDQLFKETADYIVLLKTRVI 145
            VSAKL+ L++LI P    +  + ++LF+ETADYIVLL+T+V+
Sbjct: 61  TVSAKLETLKSLISPSHAGKTLKAEELFQETADYIVLLRTQVV 94

[Close]

BLAST of Clc11G05090 vs. ExPASy TrEMBL
Match: A0A6A4M9E9 (Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_01470 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.2e-04
Identity = 39/80 (48.75%), Postives = 48/80 (60.00%), Query Frame = 0


Query: 63  RTKRSLTDSRRRSHRRHCPALRSNNGSRRDTTPTSPCGSDVSAKLDALQTLIPPQSNAQP 122
           R  R  T  R+ S RR     R+ N SR        C S VS KL+AL+ LIP  +N + 
Sbjct: 11  RPMRGGTRRRQNSQRRR--LRRAQNSSRTAAATGGACSSVVSDKLEALKNLIPAHANGE- 70

Query: 123 RQTDQLFKETADYIVLLKTR 143
           R+ DQLF+ETADYIVLLKT+
Sbjct: 71  RKPDQLFQETADYIVLLKTQ 87

The following BLAST results are available for this feature:

BLAST of Clc11G05090 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0039441.1	7.1e-21	66.99	transcription factor UPBEAT1-like [Cucumis melo var. makuwa] >TYK00630.1 transcr...	[more]
KAG6578552.1	2.4e-16	61.54	hypothetical protein SDJN03_23000, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7016112.1	2.4e-16	61.54	hypothetical protein SDJN02_21216, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022993697.1	1.9e-10	53.70	uncharacterized protein LOC111489609 [Cucurbita maxima]	[more]
KAG7986517.1	3.2e-05	48.39	hypothetical protein I3843_03G085300 [Carya illinoinensis]	[more]

BLAST of Clc11G05090 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc11G05090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BNP5	3.4e-21	66.99	Transcription factor UPBEAT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A6J1JTK8	9.3e-11	53.70	uncharacterized protein LOC111489609 OS=Cucurbita maxima OX=3661 GN=LOC111489609...	[more]
A0A5N6QW57	1.3e-04	50.00	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007655 PE=4 SV=1	[more]
A0A314YX88	2.2e-04	46.60	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_320...	[more]
A0A6A4M9E9	2.2e-04	48.75	Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3...	[more]

BLAST of Clc11G05090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..101
None	No IPR available	PANTHER	PTHR33124:SF70	SUBFAMILY NOT NAMED	coord: 27..144
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 27..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G05090.2	Clc11G05090.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated