Clc11G04210 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G04210
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr11: 3984922 .. 3990424 (-)
RNA-Seq Expression	Clc11G04210
Synteny	Clc11G04210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACCACCCACTTGCCCGAGAAATGGCCATTTCATCAAGCTCAGAAAAATTTTGGCACCTACATGGTTTGATCACTCTTGGCTGGCTCTGCTTTCTAACCTACAATCTCAGCTCGCATCTGAATTTGAAGCTTACTTCTCTTCAAGTCCCTCCAAGCAGCTGAAGGGTTTGCATTGGCAGCCTCAATCGTCGGCCGCGTAAAATCCTACCTTCTCCGGTCATCTTTATTGACTTATGACTTACTCTTCACTCTCCACTGAGTCAATGGATACAACAAATATGCAGTGTGTCTTTTTTTTTTTTTTTTTTTTTTGTTAAAAAGTACTTTTGGCCCTCAATTTTTCAAATTAACAATTTAACCCTAATTTTAGTTTATAACAATTTAACAATCAGTAATATTTAGTCTCTCTACTCTATCGTTGGAAAATTATTTTAAATGATGAAAATTTTTTTTATATAAATAAAAAAAAAATCAAACTATTTATAAATATAGAAAAATTTCACTGTAAATCAGAGATAGACTATGATAAAATTCTTATGCTTGAGTGATAGAAGTCTATCACAAATAAACAGTAAAAAATTTTTATATTTATAAATAGTTTGGCTCATTTTGCTATATTTGAAAAAAAATCCAATGATAAGACTATTTAAAATATTTACAAATGATAACAAAATATCATAGTTTATTTACAATAGACTACTATCTGTGTCTATTTACTATATGTGTCTATCACACATATAGTGGTTTATCGCAGATAAATAAGTGAAATTTTACTATATTCGTAAATATTTTGGTTCATTTTTCTTATTTGAAAACAACATTTTATAATTTGTAACCATTTCGTTCCAATTTTGAAAAAGATTATTATAATTAGTGAAGTTTCTTTACTTGCGTTGATTGATAAATTAAACGAAAATCAAATTTGTTTATAAACTAAGACTAAGAGGGTGTTTAGGCCCCCAACTACAATAATTGGTGTTACCAACTATTATAACCTACCATTAACATATTGGCATTTCAAATTTCTAAATGTTAAGTGTTACTATTTCTTAGTCATCCTCTTTTTTCCTATTACAATGTTTACTATTTTATATTCTACACCCCAAACACAAACTATTATAATCCATATACTATAACAATCAACTTAGCTCCCCAAACACCTCACAAGTTGTTACATAATTAAAATTGACTGAAATTTTTAAAGATAATGACTACATTGCTACAAATTTCAAAGTGTATAGATTAAATTGTAACTTATTAAAGTTAAGGAACTAAACTGTTACAAATTTGAAAGTACATGAATTGAATCGTAATAAGCTAATGTTTAGAAACTAAATTACTACTTTCATGAAATTTCATGGACCAAACGTGTTTTTTAAAACTTTTTTTTTTCATTTTCGGATAATCCATTTCATAATGCCCGCAAAATTTTGGAATCAACCTCATTGCATACATGTGTTTGTTGGGTTTTATGTCATAAAACTCGTGGTTTGTAAAAATTTCGAACATATTCCCAATAAAGTTGTTATCGAGGTTTATTCAGTAAAGGTGTTATTGAATATGTGAATTGCATTTATTAAATCCAATAAACTAAGAACCCCTGGTTATAGTTTGAATATTTATGTATAGACATAAAAATGGATAAGTTTAGGTAATAGCTAAAACGGTCTATAATATAGGGATAAGACTGGGTACCATATCTTAGGAACACTATGGATGCGACCTACTTTGTATTTGATACAAACGATGCGACCCTATATCGTTCATATAGAGACATGAGAGTGAGGGCATCCTATGTAATGAGTTTGCATAAGACCGAACCATGAAAACTGTTACATTATAACGTCGTTTACTGTTAAGATTGATTATTTGAACATGATGACCTAGGTAACTTCATCTTAATCATGAGCTAACTATGAACTTCTGTTTATTTGGGATTATCCTTTAATCTGCATGGGTGAGAGTGGCTCGAGTTCACCAACTCAATAAGTCTTCCATTTTAGGGATAAGACCAAGTTGATAGCTGGGGACATAGTCTTTTAAGATGAAATTCACTCTTACCTTATTTAAGGTTAGTAAAGAAGTTGTTCCTTTAAGTGCCAACTTCAGGTTTTGAACAAAGGTCCCACCTTCTCATTGGAGAGGGATTCGATTTGATGGTTGGACCACAAACTAATTGTTCATTAGAGGATTAATGGGAATTAAGGAATGAGATGTACTTACAGGGGTAAAACGATAATTTTGACCCAATTGTAATTACGAACAACTTGTGAAAGATCGACTTACTAATCATAGTTATATCAAGTGGACAGAAATGTATCTACAATGAGGAGAGTGCATATACTGGGTTATAGTGGAGTGTCCCGGTAGTTAACAAATGTCAATTAATTAACTAGGTTAAAAAGTTTAGTCAAATAATTTCTGATCATTGGAGCTCATGATTTGTAGGTCCATTAGGTCCCATTGTTAGCTCATGGACTAAACCTTGGAACAGTGTGATGAAAGAATTTGAAAACGTTCAAATTCGTAAATTCGTACAAGGAGTAAATTTTACGATTTGTTCGTGTTTATTATGAATTATACGAAATTGGAGAGTTCGAAATATTTAAATGTGATTTAAATATTAATCGGATGAATAAAGATTCATCATATTGCAATTTGTCAGGATAAGTGAAAAATTATTAATTTAATATTTAACATTAATTTAATATAATTAATTAATTATTATTTAAGTTAATTTTATATTAAATTAATGTAATTTAAAATTAATTATAAGAATTAATTTAAAAAAGAAAGTGGATTTTGAAAATTCATTTTTAATTCAAAATTGGATTTTGTAGGTTTTTTCCACTTTTGTATGGAAGTAGGAGTGTGTCTTCCTAAAGCCTCATCTCCTCCATCTTCCACCTTCTAATTCACTTCCTTAATCGCCAATTAAGGTGTCAAAACCATAGCAAATGAGATTTGCATGAATTCTTCTTTATATAGAAGAAAGGAAGATTGAAAATGGGTTGACAATCAAGTAGAATTTGCTGAAATTCTCTCAATATCCCAAGCTCTTCAAAACATTGCGTTCTTCACGTTTTTGCTCCAAATTCTCCACAATTTGGATTCCACAATCCGTTCTAAGCTCAGAGAATAACGAGGAAGACTCTTGTGGTGGTCCACGAAGTATTCGTGATAAAAAAATTTGAAGGTATTTGATTTAATTTTGAAGTTTCATTGCCTATGTTTTTTCGGTTTTAGAACAAACATGTTTAATCTTCAAAACTGAATTGTGAGGTTGAGCTTTTAAATGCACATATTTAGTTTCTTAACTTTCAAAATGTTTAAGAATTACGAATCTACTAGTACAAAATTAAAATTTTATAGGAAATTATTATAAATAATAAAAATACCAAACTATTTACAAATATAGAAAAAATTTACTGTCTATCAGCGATAGACCACAATAGACTTCTATAATGATAAATGTCTATCACTCAAACAATAGAAGTTTATCGTTGATAGATAGTGAAATTTTTCTATATATGTAAATAGTTTGATTCATTTCGTTCTATTTGAAAACAACCCAATTTAAAATCTTTATTAGACATAAAAATTTGGCCCCTGCTATTAAAATTTTGTTTTCTTAACAAAATGGTCAGATGATTTGTATTTTTCGATGACTAAGCTACCAAAGAATAACACCATGCTAAAAAATATATGGTTTCAATCTTAAATAAGGTGGTAAAGTGATTTTTGTCTAGGATAACTTGAAAGTCATTTTTCATTCAAGATTTTGGTGTGTTGGTAGTTGACCTTTTACTTCATCTTCATCTTACTCAATGCATCTTCAGCCCAAAAGTACATGTCGGCTCACATTTTAGTTTAAGTTTTAACAAAATTTTAACTGTAGGGAATAAAATAAACACTTTTTAAAAATTCAGAGACTAGAATGAATATTTTAAAAATTTAGAGACTAAAATATATCGGAGAAACCAAATAGCATTTTAATCTATTTTATATATATATATATAAAATAGATTAGAGGGTTGGAAGCCCGTCAACTGTGACGGCGTATAAACGGCCTGTTTTCTCTAACTCTACTCTTCCTTTCCTTGATCCACGTAAAACGGTGCGTTTCGGTTTGGCCATGAAAATCGTTAAAACGGCGTTTATCTCCATTGTTGGTCCAAATCGAAACCACAAACAACACAGTAGATACAAGGCATCTGAAGAAGAAGAAGAGAGAGAAAGTGAGAGATGAGTTTTTCATCGACGGCGGGATATTTGGCTCGGCGAGCCGCCCAGAAGGAGAGGGTTCGGATCCTTTACCGGCGAGCTCTCAAAGACACTCTCAATTGGGCTGTTCATCGCCATCTCTTTTACCGAGATGTATTCGTTTCTTTTTTCCCCCATTTCCACTTCTCTGTTTTGACATTTCTTCGATCCTAAACTGATTTCGTGATTCTCCCTTCTAATATTCTTTTGATTCAGGCGTCGGACCTCCGGGAGAGATTCGAGGCAAACAAACACGTGGTTCGTTCTCTGTCTGTTCCTTTAATTTTGCTTTGATCGGTTTTTTGTTATTTTCTATGTTTTCGTTGATATGAAATTTTCGGCATTGCGACCTCTTGTGAGTTAACTGGCATAGGGATATGAAAGTTTTTTTTTTTTTTTTTTGTGCGGCGGGATTGATATTTGCGGGGACTTTTCTTACTTGCTTTTTTCGTGTAAATTGTCTTGCGTTACTTGAGGAAACATTAAAATGTGGTTTGTATTTGATAGTAGTAATTTTGAAATGGTTAAAACCACTTTTTGTTGTGTTTAAAATCGCTGCAAAACACATCTTTAATCACTCAAAATAGATTCAATGTTCAAATTGATTTTAAATGATCAAAAGCATTTTCTGAGTGACTTGAAAAAGAGAAAAGTGATTTTAACCATTTTCTCTGGGATGAACATTGTTGATTGATCATTGAATATCGTCTGCTTACTGCATCTGGAAATGCGTGGATTTCACTAATAATTGTTATGATATCCTAGGAATCAAATATGATCATTTCCCAGATTCAAATCGTGTTAACTTGGAAGTCATGTAGGATATCCCATATTTAAGGATTATGTTGCCCCCAATTTGAGTTTCAAATAAGTAAGCATTCTCTTATAGAAATCATTTTCCTATACAATTTAACCATTGAGTTGCTTGTCTTATATATGTGCATAGCTCTCTCCTGATCCATGGAGTTCATTAAAAAAAAACTCAAGTTTGAAGACCGACGTTAGACGGTGGTGAGAAACTTATGAGAATTAACTTATTAAACTCAGATTAGGACTTAAAGATCCAAGTATGTTCTAGGAAATTGGGTTAAACTGAAATCTGAGAGCAGAGATTCAAGCTGGGAAAGGTCTACATGTATAGAACGACATGATTTTAGTCGGCAAGCCATGATTCCTATGCTATTGATCTATTGCTTATGGATCCTTTTTTGGGGTGGATTTGCAGGAAGATCTTGA

mRNA sequence

ATGGAACCACCCACTTGCCCGAGAAATGGCCATTTCATCAAGCTCAGAAAAATTTTGGCACCTACATGGTTTGATCACTCTTGGCTGGCTCTGCTTTCTAACCTACAATCTCAGCTCGCATCTGAATTTGAAGCTTACTTCTCTTCAAGTCCCTCCAAGCAGCTGAAGGTAGATACAAGGCATCTGAAGAAGAAGAAGAGAGAGAAAGTGAGAGATGAGTTTTTCATCGACGGCGGGATATTTGGCTCGGCGAGCCGCCCAGAAGGAGAGGGTTCGGATCCTTTACCGGCGAGCTCTCAAAGACACTCTCAATTGGGCTGTTCATCGCCATCTCTTTTACCGAGATGCGTCGGACCTCCGGGAGAGATTCGAGGCAAACAAACACGTGGAAGATCTTGA

Coding sequence (CDS)

ATGGAACCACCCACTTGCCCGAGAAATGGCCATTTCATCAAGCTCAGAAAAATTTTGGCACCTACATGGTTTGATCACTCTTGGCTGGCTCTGCTTTCTAACCTACAATCTCAGCTCGCATCTGAATTTGAAGCTTACTTCTCTTCAAGTCCCTCCAAGCAGCTGAAGGTAGATACAAGGCATCTGAAGAAGAAGAAGAGAGAGAAAGTGAGAGATGAGTTTTTCATCGACGGCGGGATATTTGGCTCGGCGAGCCGCCCAGAAGGAGAGGGTTCGGATCCTTTACCGGCGAGCTCTCAAAGACACTCTCAATTGGGCTGTTCATCGCCATCTCTTTTACCGAGATGCGTCGGACCTCCGGGAGAGATTCGAGGCAAACAAACACGTGGAAGATCTTGA

Protein sequence

MEPPTCPRNGHFIKLRKILAPTWFDHSWLALLSNLQSQLASEFEAYFSSSPSKQLKVDTRHLKKKKREKVRDEFFIDGGIFGSASRPEGEGSDPLPASSQRHSQLGCSSPSLLPRCVGPPGEIRGKQTRGRS

Homology

[Close]

BLAST of Clc11G04210 vs. NCBI nr
Match: KAG6571074.1 (hypothetical protein SDJN03_29989, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 119.0 bits (297), Expect = 3.1e-23
Identity = 57/69 (82.61%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 64  KKKREKVRDEFFIDGGIFGSASRPEGEGSDPLPASSQRHSQLGCSSPSLLPRCVGPPGEI 123
           ++K E+ R+E F+DGGIFGSASRPEGEGSDPLPAS QRHSQLGCSSPSLL RCVGPPGEI
Sbjct: 23  REKEEEERNELFVDGGIFGSASRPEGEGSDPLPASPQRHSQLGCSSPSLLSRCVGPPGEI 82

Query: 124 RGKQTRGRS 133
           R KQ RGRS
Sbjct: 83  RCKQARGRS 91

The following BLAST results are available for this feature:

BLAST of Clc11G04210 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6571074.1	3.1e-23	82.61	hypothetical protein SDJN03_29989, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Clc11G04210 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc11G04210 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc11G04210 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G04210.1	Clc11G04210.1	mRNA