Clc11G03980 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G03980
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	auxin-responsive protein SAUR24-like
Location	ClcChr11: 3773589 .. 3774891 (-)
RNA-Seq Expression	Clc11G03980
Synteny	Clc11G03980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGATTCGATTGCTATCCTTGGTTCCTCGTGCCAAGCAGATCTTAAAGATGCAGTCAGGATTTACCAAAAGTCAGTTGGATGTGCCAAAAGGACATGTAGCTATTTACGTAGGAGAGATCCAAAGGAAGCGGTTTGTGGTTCCAATAACGTACCTAAACCATCCATCATTCCAACAACTTCTCAGCCACGCAGAGGAAGAGTTTGGTTTCCATCATCTACAGGGGGCTCTAACAATTCCTTGTAAAGAGGATGCCTTCATTGATCTCACTTCTCGATTGCAAGTATCTCGAAGGATGAAAAGCAAAGGGCAAGCTGCCATTTTTTTACATTTTTTTTTCTACTCATGAGCTTTCTGATACATGTTAGAATGTTGTAGAGCAGAATACCTGTAAATGAGTTGCATTGTAAAGGTGCTTTTTCCAACGGGATTAATGAAATATAGACCAATTGATCTTCAATTTTTGTGTAGCTTATTCACTGGTGCTCTATATGTGATGGACAGTCCGAGCTGTGGGAAATATTTTTTTTTTTTTATTTGTTAGGAATAGCATAACAAAACTTCAAACATAAAAAAATCCAAGAAAACTGGATTATCATTCCTACTTATGAGTTTATGTGGAAATATTTTACTCTTGGTTGGTTTGATAAACACAATCCAATATCGATCCTATTTGCCAACTCTTTACACCTTATGGTGAAAAAACATTCATCTTTTCTCCATTGAGAAAAAATAGCTTTAGCGATTCTTAGATCTTAGGCAATTCATAGATTTAACAGATTACATTATGGTTTGATGTCTATCCTGATTTTGATCAAATAGTAATGAGAAAACTGTTACAAATTTTTCTTCCAATGACTCCAATTCCTGCTTTGATATCCACACTAAGCCGAACCTATTCTGAGTCACTTTTCATTCTTTCACTTAAACCAAATTTAGACATGCAAGTCACTTCACCATCAGCTATCCTCAATGTCAAGCAAATCCCTCATAGTGCAGGCTGTTACAACTAAATCAAGCTCATGTCCCCAAAGGTCACAGTGCAATCTATGTTGGAGAAATTCAAAGGAAGCCATTTTGGTTCCATTTCCATTATCATATTTGAATCATCCAACATTTATTTGTTTGATTACGAATGTTGAGGAGTGTAGATACAGCCATTGCATGGGTGGTTTGACAGTTCCCAGCAGAGGATTTGCTTTGATCTCACTTCAAGGCTGCACAGTTCTTGAAAGATTATGATCAAGAAGAGAATTCCCTTATCCTCTCACCCAGTTTTAGTAAGTCAGAGTCGAATATGA

mRNA sequence

ATGGGGATTCGATTGCTATCCTTGGTTCCTCGTGCCAAGCAGATCTTAAAGATGCAGTCAGGATTTACCAAAAGTCAGTTGGATGTGCCAAAAGGACATGTAGCTATTTACGTAGGAGAGATCCAAAGGAAGCGGTTTGTGGTTCCAATAACGTACCTAAACCATCCATCATTCCAACAACTTCTCAGCCACGCAGAGGAAGAGTTTGGTTTCCATCATCTACAGGGGGCTCTAACAATTCCTTGTAAAGAGGATGCCTTCATTGATCTCACTTCTCGATTGCAAGCTGTTACAACTAAATCAAGCTCATGTCCCCAAAGGTCACAGTGCAATCTATGTTGGAGAAATTCAAAGGAAGCCATTTTGGTTCCATTTCCATTATCATATTTGAATCATCCAACATTTATTTGTTTGATTACGAATGTTGAGGAGTGTAGATACAGCCATTGCATGGGTGGTTTGACAGTTCCCAGCAGAGGATTTGCTTTGATCTCACTTCAAGGCTGCACAGTTCTTGAAAGATTATGATCAAGAAGAGAATTCCCTTATCCTCTCACCCAGTTTTAGTAAGTCAGAGTCGAATATGA

Coding sequence (CDS)

ATGGGGATTCGATTGCTATCCTTGGTTCCTCGTGCCAAGCAGATCTTAAAGATGCAGTCAGGATTTACCAAAAGTCAGTTGGATGTGCCAAAAGGACATGTAGCTATTTACGTAGGAGAGATCCAAAGGAAGCGGTTTGTGGTTCCAATAACGTACCTAAACCATCCATCATTCCAACAACTTCTCAGCCACGCAGAGGAAGAGTTTGGTTTCCATCATCTACAGGGGGCTCTAACAATTCCTTGTAAAGAGGATGCCTTCATTGATCTCACTTCTCGATTGCAAGCTGTTACAACTAAATCAAGCTCATGTCCCCAAAGGTCACAGTGCAATCTATGTTGGAGAAATTCAAAGGAAGCCATTTTGGTTCCATTTCCATTATCATATTTGAATCATCCAACATTTATTTGTTTGATTACGAATGTTGAGGAGTGTAGATACAGCCATTGCATGGGTGGTTTGACAGTTCCCAGCAGAGGATTTGCTTTGATCTCACTTCAAGGCTGCACAGTTCTTGAAAGATTATGA

Protein sequence

MGIRLLSLVPRAKQILKMQSGFTKSQLDVPKGHVAIYVGEIQRKRFVVPITYLNHPSFQQLLSHAEEEFGFHHLQGALTIPCKEDAFIDLTSRLQAVTTKSSSCPQRSQCNLCWRNSKEAILVPFPLSYLNHPTFICLITNVEECRYSHCMGGLTVPSRGFALISLQGCTVLERL

Homology

[Close]

BLAST of Clc11G03980 vs. NCBI nr
Match: XP_022947571.1 (auxin-responsive protein SAUR24-like [Cucurbita moschata] >XP_022947572.1 auxin-responsive protein SAUR24-like [Cucurbita moschata] >KAG6605023.1 Auxin-responsive protein SAUR24, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 181.8 bits (460), Expect = 5.1e-42
Identity = 88/95 (92.63%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 1  MGIRLLSLVPRAKQILKMQSGFTKSQLDVPKGHVAIYVGEIQRKRFVVPITYLNHPSFQQ 60
          MGIRLLSLVP AKQILKMQSGFTKSQLDVPKGHVA+YVGEIQRKRF+VPI+YLNHPSFQ+
Sbjct: 1  MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPSFQK 60

Query: 61 LLSHAEEEFGFHHLQGALTIPCKEDAFIDLTSRLQ 96
          LLSHAEEEFGFHH QG LTIPCKEDAFIDLTSRLQ
Sbjct: 61 LLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQ 95

[Close]

BLAST of Clc11G03980 vs. NCBI nr
Match: KAG6605019.1 (Auxin-responsive protein SAUR24, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 181.8 bits (460), Expect = 5.1e-42
Identity = 88/95 (92.63%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 1  MGIRLLSLVPRAKQILKMQSGFTKSQLDVPKGHVAIYVGEIQRKRFVVPITYLNHPSFQQ 60
          MGIRLLSLVP AKQILKMQSGFTKSQLDVPKGHVA+YVGEIQRKRF+VPI+YLNHPSFQ+
Sbjct: 1  MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPSFQK 60

Query: 61 LLSHAEEEFGFHHLQGALTIPCKEDAFIDLTSRLQ 96
          LLSHAEEEFGFHH QG LTIPCKEDAFIDLTSRLQ
Sbjct: 61 LLSHAEEEFGFHHPQGCLTIPCKEDAFIDLTSRLQ 95

[Close]

BLAST of Clc11G03980 vs. NCBI nr
Match: XP_023533292.1 (auxin-responsive protein SAUR24-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 181.4 bits (459), Expect = 6.7e-42
Identity = 87/95 (91.58%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 1  MGIRLLSLVPRAKQILKMQSGFTKSQLDVPKGHVAIYVGEIQRKRFVVPITYLNHPSFQQ 60
          MGIRLLSLVP AKQILKMQSGFTKSQLDVPKGHVA+YVGEIQRKRF+VPI+YLNHPSFQ+
Sbjct: 1  MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPSFQK 60

Query: 61 LLSHAEEEFGFHHLQGALTIPCKEDAFIDLTSRLQ 96
          LLSHAEEEFGFHH QG LTIPCKEDAF+DLTSRLQ
Sbjct: 61 LLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRLQ 95

[Close]

BLAST of Clc11G03980 vs. NCBI nr
Match: XP_023007091.1 (auxin-responsive protein SAUR24-like [Cucurbita maxima])

HSP 1 Score: 181.4 bits (459), Expect = 6.7e-42
Identity = 88/95 (92.63%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MGIRLLSLVPRAKQILKMQSGFTKSQLDVPKGHVAIYVGEIQRKRFVVPITYLNHPSFQQ 60
          MGIRLLSLVP AKQILKMQSGFTKSQLDVPKGHVA+YVGEIQRKRF+VPI+YLNHPSFQ 
Sbjct: 1  MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPSFQN 60

Query: 61 LLSHAEEEFGFHHLQGALTIPCKEDAFIDLTSRLQ 96
          LLSHAEEEFGFHH QG LTIPCKEDAFIDLTSRLQ
Sbjct: 61 LLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQ 95

[Close]

BLAST of Clc11G03980 vs. NCBI nr
Match: XP_038900563.1 (auxin-responsive protein SAUR21-like [Benincasa hispida])

HSP 1 Score: 181.0 bits (458), Expect = 8.7e-42
Identity = 88/96 (91.67%), Postives = 91/96 (94.79%), Query Frame = 0


Query: 1  MGIRLLSLVPRAKQILKMQSGFTKSQLDVPKGHVAIYVGEIQRKRFVVPITYLNHPSFQQ 60
          MGIRLLSLVP AKQILKMQ  FTKSQLDVPKGHVA+YVGEIQRKRFVVPI+YLNHPSFQQ
Sbjct: 1  MGIRLLSLVPHAKQILKMQPSFTKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQ 60

Query: 61 LLSHAEEEFGFHHLQGALTIPCKEDAFIDLTSRLQA 97
          LLSHAEEEFGFHH QG +TIPCKEDAFIDLTSRLQA
Sbjct: 61 LLSHAEEEFGFHHPQGGITIPCKEDAFIDLTSRLQA 96

[Close]

BLAST of Clc11G03980 vs. ExPASy Swiss-Prot
Match: Q9FK62 (Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana OX=3702 GN=SAUR24 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.3e-21
Identity = 50/84 (59.52%), Postives = 63/84 (75.00%), Query Frame = 0


Query: 12 AKQILKMQSGFTKSQLDVPKGHVAIYVGEIQRKRFVVPITYLNHPSFQQLLSHAEEEFGF 71
          AK+IL   +G   +    PKG +A+YVGE Q+KR++VP++YLN PSFQ LLS +EEEFGF
Sbjct: 10 AKKILSRSTGAGSA---APKGFLAVYVGESQKKRYLVPVSYLNQPSFQALLSKSEEEFGF 69

Query: 72 HHLQGALTIPCKEDAFIDLTSRLQ 96
           H  G LTIPC ED FI++TSRLQ
Sbjct: 70 DHPMGGLTIPCPEDTFINVTSRLQ 90

[Close]

BLAST of Clc11G03980 vs. ExPASy Swiss-Prot
Match: Q9FJG0 (Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana OX=3702 GN=SAUR20 PE=1 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 8.8e-21
Identity = 48/79 (60.76%), Postives = 59/79 (74.68%), Query Frame = 0


Query: 17 KMQSGFTKSQLDVPKGHVAIYVGEIQRKRFVVPITYLNHPSFQQLLSHAEEEFGFHHLQG 76
          K+ S  T +    PKG +A+YVGE Q+KR++VPI+YLN PSFQ LLS +EEEFGF H  G
Sbjct: 12 KILSRSTTAASAAPKGFLAVYVGESQKKRYLVPISYLNQPSFQALLSKSEEEFGFDHPMG 71

Query: 77 ALTIPCKEDAFIDLTSRLQ 96
           LTIPC ED FI++TSR Q
Sbjct: 72 GLTIPCPEDTFINVTSRFQ 90

[Close]

BLAST of Clc11G03980 vs. ExPASy Swiss-Prot
Match: Q9FJF7 (Auxin-responsive protein SAUR22 OS=Arabidopsis thaliana OX=3702 GN=SAUR22 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.5e-20
Identity = 47/79 (59.49%), Postives = 60/79 (75.95%), Query Frame = 0


Query: 17 KMQSGFTKSQLDVPKGHVAIYVGEIQRKRFVVPITYLNHPSFQQLLSHAEEEFGFHHLQG 76
          K+ S  T +    PKG +A+YVGE Q+KR++VP++YLN PSFQ LLS +E+EFGF H  G
Sbjct: 12 KILSRSTAAVSAAPKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEDEFGFDHPMG 71

Query: 77 ALTIPCKEDAFIDLTSRLQ 96
           LTIPC ED FI++TSRLQ
Sbjct: 72 GLTIPCHEDTFINVTSRLQ 90

[Close]

BLAST of Clc11G03980 vs. ExPASy Swiss-Prot
Match: Q9FJG1 (Auxin-responsive protein SAUR19 OS=Arabidopsis thaliana OX=3702 GN=SAUR19 PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.3e-20
Identity = 47/79 (59.49%), Postives = 60/79 (75.95%), Query Frame = 0


Query: 17 KMQSGFTKSQLDVPKGHVAIYVGEIQRKRFVVPITYLNHPSFQQLLSHAEEEFGFHHLQG 76
          K+ S  T +    PKG +A+YVGE Q+KR++VP++YL+ PSFQ LLS +EEEFGF H  G
Sbjct: 12 KILSRSTAAGSAAPKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSKSEEEFGFAHPMG 71

Query: 77 ALTIPCKEDAFIDLTSRLQ 96
           LTIPC ED FI++TSRLQ
Sbjct: 72 GLTIPCPEDTFINVTSRLQ 90

[Close]

BLAST of Clc11G03980 vs. ExPASy Swiss-Prot
Match: Q9FJF6 (Auxin-responsive protein SAUR23 OS=Arabidopsis thaliana OX=3702 GN=SAUR23 PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.4e-20
Identity = 48/83 (57.83%), Postives = 61/83 (73.49%), Query Frame = 0


Query: 12 AKQILKMQSGFTKSQLDVPKGHVAIYVGEIQRKRFVVPITYLNHPSFQQLLSHAEEEFGF 71
          AK+IL   +    +    PKG +A+YVGE Q+KR++VP++YLN PSFQ LLS +EEEFGF
Sbjct: 10 AKKILSRSAAAVSAP---PKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEEEFGF 69

Query: 72 HHLQGALTIPCKEDAFIDLTSRL 95
           H  G LTIPC ED FI++TSRL
Sbjct: 70 DHPMGGLTIPCPEDTFINVTSRL 89

[Close]

BLAST of Clc11G03980 vs. ExPASy TrEMBL
Match: A0A6J1G6T7 (auxin-responsive protein SAUR24-like OS=Cucurbita moschata OX=3662 GN=LOC111451395 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.5e-42
Identity = 88/95 (92.63%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 1  MGIRLLSLVPRAKQILKMQSGFTKSQLDVPKGHVAIYVGEIQRKRFVVPITYLNHPSFQQ 60
          MGIRLLSLVP AKQILKMQSGFTKSQLDVPKGHVA+YVGEIQRKRF+VPI+YLNHPSFQ+
Sbjct: 1  MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPSFQK 60

Query: 61 LLSHAEEEFGFHHLQGALTIPCKEDAFIDLTSRLQ 96
          LLSHAEEEFGFHH QG LTIPCKEDAFIDLTSRLQ
Sbjct: 61 LLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQ 95

[Close]

BLAST of Clc11G03980 vs. ExPASy TrEMBL
Match: A0A6J1KZJ6 (auxin-responsive protein SAUR24-like OS=Cucurbita maxima OX=3661 GN=LOC111499688 PE=3 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 3.2e-42
Identity = 88/95 (92.63%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MGIRLLSLVPRAKQILKMQSGFTKSQLDVPKGHVAIYVGEIQRKRFVVPITYLNHPSFQQ 60
          MGIRLLSLVP AKQILKMQSGFTKSQLDVPKGHVA+YVGEIQRKRF+VPI+YLNHPSFQ 
Sbjct: 1  MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPSFQN 60

Query: 61 LLSHAEEEFGFHHLQGALTIPCKEDAFIDLTSRLQ 96
          LLSHAEEEFGFHH QG LTIPCKEDAFIDLTSRLQ
Sbjct: 61 LLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQ 95

[Close]

BLAST of Clc11G03980 vs. ExPASy TrEMBL
Match: A0A6J1G6U1 (auxin-responsive protein SAUR23-like OS=Cucurbita moschata OX=3662 GN=LOC111451399 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 5.5e-42
Identity = 87/94 (92.55%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 1  MGIRLLSLVPRAKQILKMQSGFTKSQLDVPKGHVAIYVGEIQRKRFVVPITYLNHPSFQQ 60
          MGIRLLSLVP AKQILKMQSGFTKSQLDVPKGHVA+YVGEIQRKRFVVPI+YLNHPSFQ+
Sbjct: 1  MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQK 60

Query: 61 LLSHAEEEFGFHHLQGALTIPCKEDAFIDLTSRL 95
          LLSHAEEEFGFHH QG LTIPCKEDAF+DLTSRL
Sbjct: 61 LLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRL 94

[Close]

BLAST of Clc11G03980 vs. ExPASy TrEMBL
Match: A0A6J1JHE3 (auxin-responsive protein SAUR24-like OS=Cucurbita maxima OX=3661 GN=LOC111484398 PE=3 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 7.2e-42
Identity = 87/95 (91.58%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MGIRLLSLVPRAKQILKMQSGFTKSQLDVPKGHVAIYVGEIQRKRFVVPITYLNHPSFQQ 60
          MGIR LSLVP AKQILKMQSGFTK+QLDVPKGHVA+YVGEIQRKRFVVPI+YLNHPSFQQ
Sbjct: 1  MGIRFLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQ 60

Query: 61 LLSHAEEEFGFHHLQGALTIPCKEDAFIDLTSRLQ 96
          LLSHAEE+FGFHH QG LTIPCKEDAFIDLTSRLQ
Sbjct: 61 LLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLQ 95

[Close]

BLAST of Clc11G03980 vs. ExPASy TrEMBL
Match: A0A6J1FVI4 (auxin-responsive protein SAUR24-like OS=Cucurbita moschata OX=3662 GN=LOC111448832 PE=3 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 7.2e-42
Identity = 87/95 (91.58%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MGIRLLSLVPRAKQILKMQSGFTKSQLDVPKGHVAIYVGEIQRKRFVVPITYLNHPSFQQ 60
          MGIR LSLVP AKQILKMQSGFTK+QLDVPKGHVA+YVGEIQRKRFVVPI+YLNHPSFQQ
Sbjct: 1  MGIRFLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQ 60

Query: 61 LLSHAEEEFGFHHLQGALTIPCKEDAFIDLTSRLQ 96
          LLSHAEE+FGFHH QG LTIPCKEDAFIDLTSRLQ
Sbjct: 61 LLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLQ 95

[Close]

BLAST of Clc11G03980 vs. TAIR 10
Match: AT4G38840.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 110.2 bits (274), Expect = 1.8e-24
Identity = 55/97 (56.70%), Postives = 69/97 (71.13%), Query Frame = 0


Query: 1  MGIRLLSLVPRAKQILK----MQSGFTKSQLDVPKGHVAIYVGEIQRKRFVVPITYLNHP 60
          M IR+  ++  +KQIL+    + S  + S LDVPKG++A+YVGE   KRFVVP++YL+ P
Sbjct: 1  MAIRIPRVLQSSKQILRQAKLLSSSSSSSSLDVPKGYLAVYVGEQNMKRFVVPVSYLDQP 60

Query: 61 SFQQLLSHAEEEFGFHHLQGALTIPCKEDAFIDLTSR 94
          SFQ LL  AEEEFGF H  G LTIPC E+ FIDL SR
Sbjct: 61 SFQDLLRKAEEEFGFDHPMGGLTIPCSEEIFIDLASR 97

[Close]

BLAST of Clc11G03980 vs. TAIR 10
Match: AT2G21210.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 109.0 bits (271), Expect = 3.9e-24
Identity = 54/95 (56.84%), Postives = 71/95 (74.74%), Query Frame = 0


Query: 1  MGIRLLSLVPRAKQILKMQSGFTKSQLDVPKGHVAIYVGE-IQRKRFVVPITYLNHPSFQ 60
          M IR+  ++  +KQ+LK  S  + + + +PKGH+A+YVGE +Q++RFVVP+TYL+HP FQ
Sbjct: 1  MAIRISRVLQSSKQLLKSLS-HSSNNVAIPKGHLAVYVGEMMQKRRFVVPVTYLSHPCFQ 60

Query: 61 QLLSHAEEEFGFHHLQGALTIPCKEDAFIDLTSRL 95
          +LL  AEEEFGF H  G LTIPC E  FIDL SRL
Sbjct: 61 KLLRKAEEEFGFDHPMGGLTIPCTEQIFIDLASRL 94

[Close]

BLAST of Clc11G03980 vs. TAIR 10
Match: AT4G34810.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 107.5 bits (267), Expect = 1.1e-23
Identity = 56/105 (53.33%), Postives = 75/105 (71.43%), Query Frame = 0


Query: 1   MGIRLLSLVPRAKQILKMQSGFTKSQLD------VPKGHVAIYVG---EIQRKRFVVPIT 60
           MG+   ++    KQILK+ S   +++        VPKGHVA+YVG   E+++KRFVVPI+
Sbjct: 1   MGLSRFAISNATKQILKLNSLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPIS 60

Query: 61  YLNHPSFQQLLSHAEEEFGFHHLQGALTIPCKEDAFIDL-TSRLQ 96
           +LNHPSF++ LS AEEEFGF+H  G LTIPC+E+ F+DL  SRLQ
Sbjct: 61  FLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDLIASRLQ 105

[Close]

BLAST of Clc11G03980 vs. TAIR 10
Match: AT5G18080.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 103.6 bits (257), Expect = 1.6e-22
Identity = 50/84 (59.52%), Postives = 63/84 (75.00%), Query Frame = 0


Query: 12 AKQILKMQSGFTKSQLDVPKGHVAIYVGEIQRKRFVVPITYLNHPSFQQLLSHAEEEFGF 71
          AK+IL   +G   +    PKG +A+YVGE Q+KR++VP++YLN PSFQ LLS +EEEFGF
Sbjct: 10 AKKILSRSTGAGSA---APKGFLAVYVGESQKKRYLVPVSYLNQPSFQALLSKSEEEFGF 69

Query: 72 HHLQGALTIPCKEDAFIDLTSRLQ 96
           H  G LTIPC ED FI++TSRLQ
Sbjct: 70 DHPMGGLTIPCPEDTFINVTSRLQ 90

[Close]

BLAST of Clc11G03980 vs. TAIR 10
Match: AT4G34790.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 102.8 bits (255), Expect = 2.8e-22
Identity = 55/107 (51.40%), Postives = 73/107 (68.22%), Query Frame = 0


Query: 1   MGIRLLSLVPRAKQILKMQSGFTKSQLD-----------VPKGHVAIYVGE-IQRKRFVV 60
           MG+ + S++P AKQI K QS   K+              VPKGHVA+YVGE +++KRFVV
Sbjct: 1   MGL-MRSMLPNAKQIFKSQSMRNKNGSSSPSTTTTTSGLVPKGHVAVYVGEQMEKKRFVV 60

Query: 61  PITYLNHPSFQQLLSHAEEEFGFHHLQGALTIPCKEDAFIDLTSRLQ 96
           PI+YLNHP F++ L+ AEEE GFHH  G LTIPC+E++F+ L +  Q
Sbjct: 61  PISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFLYLITSHQ 106

The following BLAST results are available for this feature:

BLAST of Clc11G03980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947571.1	5.1e-42	92.63	auxin-responsive protein SAUR24-like [Cucurbita moschata] >XP_022947572.1 auxin-...	[more]
KAG6605019.1	5.1e-42	92.63	Auxin-responsive protein SAUR24, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023533292.1	6.7e-42	91.58	auxin-responsive protein SAUR24-like [Cucurbita pepo subsp. pepo]	[more]
XP_023007091.1	6.7e-42	92.63	auxin-responsive protein SAUR24-like [Cucurbita maxima]	[more]
XP_038900563.1	8.7e-42	91.67	auxin-responsive protein SAUR21-like [Benincasa hispida]	[more]

BLAST of Clc11G03980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FK62	2.3e-21	59.52	Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana OX=3702 GN=SAUR24 PE=2 S...	[more]
Q9FJG0	8.8e-21	60.76	Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana OX=3702 GN=SAUR20 PE=1 S...	[more]
Q9FJF7	1.5e-20	59.49	Auxin-responsive protein SAUR22 OS=Arabidopsis thaliana OX=3702 GN=SAUR22 PE=2 S...	[more]
Q9FJG1	3.3e-20	59.49	Auxin-responsive protein SAUR19 OS=Arabidopsis thaliana OX=3702 GN=SAUR19 PE=2 S...	[more]
Q9FJF6	4.4e-20	57.83	Auxin-responsive protein SAUR23 OS=Arabidopsis thaliana OX=3702 GN=SAUR23 PE=2 S...	[more]

BLAST of Clc11G03980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G6T7	2.5e-42	92.63	auxin-responsive protein SAUR24-like OS=Cucurbita moschata OX=3662 GN=LOC1114513...	[more]
A0A6J1KZJ6	3.2e-42	92.63	auxin-responsive protein SAUR24-like OS=Cucurbita maxima OX=3661 GN=LOC111499688...	[more]
A0A6J1G6U1	5.5e-42	92.55	auxin-responsive protein SAUR23-like OS=Cucurbita moschata OX=3662 GN=LOC1114513...	[more]
A0A6J1JHE3	7.2e-42	91.58	auxin-responsive protein SAUR24-like OS=Cucurbita maxima OX=3661 GN=LOC111484398...	[more]
A0A6J1FVI4	7.2e-42	91.58	auxin-responsive protein SAUR24-like OS=Cucurbita moschata OX=3662 GN=LOC1114488...	[more]

BLAST of Clc11G03980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G38840.1	1.8e-24	56.70	SAUR-like auxin-responsive protein family	[more]
AT2G21210.1	3.9e-24	56.84	SAUR-like auxin-responsive protein family	[more]
AT4G34810.1	1.1e-23	53.33	SAUR-like auxin-responsive protein family	[more]
AT5G18080.1	1.6e-22	59.52	SAUR-like auxin-responsive protein family	[more]
AT4G34790.1	2.8e-22	51.40	SAUR-like auxin-responsive protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003676	Small auxin-up RNA	PFAM	PF02519	Auxin_inducible	coord: 12..93 e-value: 1.9E-25 score: 88.8
None	No IPR available	PANTHER	PTHR31929:SF121	AUXIN-RESPONSIVE PROTEIN SAUR21-LIKE	coord: 1..96 coord: 125..166
None	No IPR available	PANTHER	PTHR31929	SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED	coord: 125..166
None	No IPR available	PANTHER	PTHR31929	SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED	coord: 1..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G03980.1	Clc11G03980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin