Clc11G03235 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G03235
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Ribosomal protein L31
Location	ClcChr11: 3118622 .. 3120183 (+)
RNA-Seq Expression	Clc11G03235
Synteny	Clc11G03235

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGTGGATATCATATGTCACTCAGAGTGGCAGATTGATGCACGTTATGATGACCAAGATACACAATGTCGGTAAAGTCTACCACTTCAGAGCAAGGCGCCAAATGGCTGAAAGTGTTGGGCAAATTGCCAGGTTCAGACGACGTTACGAGAAAGGGATTGCTGAAAATGTTGAAAATGCTGAAAAGTGAGGTTCAAGGCAGCTCAAGGATCAGCTGTTCACTTGGATGATTATGGATTCGTTTTGAGAGCATGACCTTGTGAGTGTTAGGAATTTAAATTTCACTTCTTTCAGTGGAGTCAATCCCTTTTCATAGCATTTTATGACACTGAGTTATTTCTTATAATGGTTTAGATGTGCTTTTACCATTAGAAATATCTAATCTGCATTCCTATTTTCTGTTCAATAAATGAGATCATTTTCCACCTTTTTTTTATCGGGAGTCTGTAGCTCTGCTTCCTTATATGCTGTACTAAGAGATGTCGAGTTTTTTGGTACTAAGCTCACCCAAAGGTTCAAATTTGAGACCTCTAAGCTGGTATGACCAAGAGACGTTAAACCATTGGCAACGAGGCTGCCCCATGGGGGGGCATCTTACACGTTATTTATCTCATTGTGTAATCAAACTCACAGGGCTTTGTATGCTAATAAAAACCTACTAAATAGTGGAGTTGTTGACTTGGGTATACTCTAGTTGTTAGGTATTTAATGCCTCCCCTAACCCTATGAATTCTAGGTTTGAATCCCTTAAAAAAGAGTTGGGTATTCTTTTGGATAACTTTGGTGTCTGAGGGTGGACCTATTGAGGTTGGAATAATGTAGTTGGTAGTCTTATTCGAGATAAGAAAAAGAAACTATTTATACATCGAAGTAGCGGTGAGCGTAATAGTCCAAAAAATCAGCCAACCGCTAGATTGTGAAAAATCCAAACGGACAAAAATTCTAAGAATAAAACCGACTGATTGATGGTTTGCACTCCTTGACGGTCGAGGTTGGTTTGATCATGTACTAACCGACCATAGTGGGTTCAGTGGCGGTTTGGTTGGAAAACTGACTCCAACTAACTGGTGCATACCCCTACACCAAATGGTTTAGTTAGGCAATGACGACTACATCGAGTATTTTTTCATCAAGATGCATTGCTCATTGCTATCATGTTTGGAGCATTAGCTTAGCTTTTTAACTAATGGCTTCCATTTTTTTTCCACCATTTCCCAGTTTCCTGGAAAAAGGTCTTACGCATATGGTAAAAGTGAAGTATACATTTATACAATATTTGTTTTAGCCATTGACAAATCAGTATGGTGTTTTGTAATGCTTGATCAATTCCTTTTGCGTATTTGATTCTTTTCGCCATTCAGCTCACTACTCTCGTCAAGTGTTTTAGTAGGAAAAAGTTGCTAAATATATCGTAACTATTACCATTCCTTTATAAGATTCTACATCATTTAAACTTTATATTCCAGTTTTACATGTGTTACTGTTAGTATCAAAAGTACTCCACACGAACATCAAAGGAAGACATACAAAACTAAAAGGGAACTTCCTTGTAGTTGGTGA

mRNA sequence

ATGCAGTGGATATCATATGTCACTCAGAGTGGCAGATTGATGCACGTTATGATGACCAAGATACACAATGTCGGTAAAGTCTACCACTTCAGAGCAAGGCGCCAAATGGCTGAAAGTGTTGGGCAAATTGCCAGGTTCAGACGACGTTACGAGAAAGGGATTGCTGAAAATGTTGAAAATGCTGAAAAGTTTGAATCCCTTAAAAAAGAGTTGGGTATTCTTTTGGATAACTTTGGTTTTCCTGGAAAAAGGTCTTACGCATATGGTAAAAGTGAAGTATACATTTATACAATATTTGTTTTAGCCATTGACAAATCAGTATGTTTTACATGTGTTACTGTTAGTATCAAAAGTACTCCACACGAACATCAAAGGAAGACATACAAAACTAAAAGGGAACTTCCTTGTAGTTGGTGA

Coding sequence (CDS)

ATGCAGTGGATATCATATGTCACTCAGAGTGGCAGATTGATGCACGTTATGATGACCAAGATACACAATGTCGGTAAAGTCTACCACTTCAGAGCAAGGCGCCAAATGGCTGAAAGTGTTGGGCAAATTGCCAGGTTCAGACGACGTTACGAGAAAGGGATTGCTGAAAATGTTGAAAATGCTGAAAAGTTTGAATCCCTTAAAAAAGAGTTGGGTATTCTTTTGGATAACTTTGGTTTTCCTGGAAAAAGGTCTTACGCATATGGTAAAAGTGAAGTATACATTTATACAATATTTGTTTTAGCCATTGACAAATCAGTATGTTTTACATGTGTTACTGTTAGTATCAAAAGTACTCCACACGAACATCAAAGGAAGACATACAAAACTAAAAGGGAACTTCCTTGTAGTTGGTGA

Protein sequence

MQWISYVTQSGRLMHVMMTKIHNVGKVYHFRARRQMAESVGQIARFRRRYEKGIAENVENAEKFESLKKELGILLDNFGFPGKRSYAYGKSEVYIYTIFVLAIDKSVCFTCVTVSIKSTPHEHQRKTYKTKRELPCSW

Homology

[Close]

BLAST of Clc11G03235 vs. NCBI nr
Match: XP_022143125.1 (uncharacterized protein LOC111013069 [Momordica charantia] >XP_022143126.1 uncharacterized protein LOC111013069 [Momordica charantia])

HSP 1 Score: 120.9 bits (302), Expect = 8.4e-24
Identity = 59/63 (93.65%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MQWISYVTQSGRLMHVMMTKIHNVGKVYHFRARRQMAESVGQIARFRRRYEKGIAENVEN 60
          MQWISYVTQSGRLMHVMMTKIH+VGKVYHFRA+RQMAESVGQIA+F+RRYEKGIAENVEN
Sbjct: 9  MQWISYVTQSGRLMHVMMTKIHHVGKVYHFRAKRQMAESVGQIAKFKRRYEKGIAENVEN 68

Query: 61 AEK 64
          AEK
Sbjct: 69 AEK 71

[Close]

BLAST of Clc11G03235 vs. NCBI nr
Match: XP_038890309.1 (uncharacterized protein LOC120079925 [Benincasa hispida] >XP_038890310.1 uncharacterized protein LOC120079925 [Benincasa hispida])

HSP 1 Score: 114.8 bits (286), Expect = 6.0e-22
Identity = 57/63 (90.48%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1  MQWISYVTQSGRLMHVMMTKIHNVGKVYHFRARRQMAESVGQIARFRRRYEKGIAENVEN 60
          MQWISYVTQSGRLMHVMMTKIH+VGKVYH RARRQMAESVGQIARF+RRYEK IAENVEN
Sbjct: 9  MQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQMAESVGQIARFKRRYEKMIAENVEN 68

Query: 61 AEK 64
           +K
Sbjct: 69 TDK 71

[Close]

BLAST of Clc11G03235 vs. NCBI nr
Match: XP_022946219.1 (uncharacterized protein LOC111450371 [Cucurbita moschata])

HSP 1 Score: 111.3 bits (277), Expect = 6.7e-21
Identity = 54/65 (83.08%), Postives = 60/65 (92.31%), Query Frame = 0


Query: 1  MQWISYVTQSGRLMHVMMTKIHNVGKVYHFRARRQMAESVGQIARFRRRYEKGIAENVEN 60
          MQWISYVTQSGRLMHVMMTKIH+VGKVYHFRARRQ+AES+GQIA+F+RRYEK I EN E+
Sbjct: 9  MQWISYVTQSGRLMHVMMTKIHHVGKVYHFRARRQLAESIGQIAKFKRRYEKDIVENDES 68

Query: 61 AEKFE 66
           EK E
Sbjct: 69 VEKAE 73

[Close]

BLAST of Clc11G03235 vs. NCBI nr
Match: XP_023547264.1 (uncharacterized protein LOC111806134 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 109.4 bits (272), Expect = 2.5e-20
Identity = 54/65 (83.08%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 1  MQWISYVTQSGRLMHVMMTKIHNVGKVYHFRARRQMAESVGQIARFRRRYEKGIAENVEN 60
          MQWISYVTQSGRLMHVMMTKIH+VGKVYH RARRQ+AESVGQIA+F+RRYEK I EN E+
Sbjct: 9  MQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESVGQIAKFKRRYEKDIVENDES 68

Query: 61 AEKFE 66
           EK E
Sbjct: 69 VEKAE 73

[Close]

BLAST of Clc11G03235 vs. NCBI nr
Match: KAG7030387.1 (hypothetical protein SDJN02_08734, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 109.0 bits (271), Expect = 3.3e-20
Identity = 53/65 (81.54%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 1   MQWISYVTQSGRLMHVMMTKIHNVGKVYHFRARRQMAESVGQIARFRRRYEKGIAENVEN 60
           MQWISYVTQSGRLMHVMMTKIH+VGKVYH RARRQ+AES+GQIA+F+RRYEK I EN E+
Sbjct: 64  MQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESIGQIAKFKRRYEKDIVENDES 123

Query: 61  AEKFE 66
            EK E
Sbjct: 124 VEKAE 128

[Close]

BLAST of Clc11G03235 vs. ExPASy TrEMBL
Match: A0A6J1CPB3 (uncharacterized protein LOC111013069 OS=Momordica charantia OX=3673 GN=LOC111013069 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 4.1e-24
Identity = 59/63 (93.65%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MQWISYVTQSGRLMHVMMTKIHNVGKVYHFRARRQMAESVGQIARFRRRYEKGIAENVEN 60
          MQWISYVTQSGRLMHVMMTKIH+VGKVYHFRA+RQMAESVGQIA+F+RRYEKGIAENVEN
Sbjct: 9  MQWISYVTQSGRLMHVMMTKIHHVGKVYHFRAKRQMAESVGQIAKFKRRYEKGIAENVEN 68

Query: 61 AEK 64
          AEK
Sbjct: 69 AEK 71

[Close]

BLAST of Clc11G03235 vs. ExPASy TrEMBL
Match: A0A6J1G367 (uncharacterized protein LOC111450371 OS=Cucurbita moschata OX=3662 GN=LOC111450371 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 3.2e-21
Identity = 54/65 (83.08%), Postives = 60/65 (92.31%), Query Frame = 0


Query: 1  MQWISYVTQSGRLMHVMMTKIHNVGKVYHFRARRQMAESVGQIARFRRRYEKGIAENVEN 60
          MQWISYVTQSGRLMHVMMTKIH+VGKVYHFRARRQ+AES+GQIA+F+RRYEK I EN E+
Sbjct: 9  MQWISYVTQSGRLMHVMMTKIHHVGKVYHFRARRQLAESIGQIAKFKRRYEKDIVENDES 68

Query: 61 AEKFE 66
           EK E
Sbjct: 69 VEKAE 73

[Close]

BLAST of Clc11G03235 vs. ExPASy TrEMBL
Match: A0A6J1KGB8 (uncharacterized protein LOC111493644 OS=Cucurbita maxima OX=3661 GN=LOC111493644 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.1e-20
Identity = 54/65 (83.08%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 1  MQWISYVTQSGRLMHVMMTKIHNVGKVYHFRARRQMAESVGQIARFRRRYEKGIAENVEN 60
          MQWISYVTQSGRLMHVMMTKIH+VGKVY FRARRQ+AESVGQIA+F+RRYEK I EN E+
Sbjct: 9  MQWISYVTQSGRLMHVMMTKIHHVGKVYQFRARRQLAESVGQIAKFKRRYEKDIVENDES 68

Query: 61 AEKFE 66
           EK E
Sbjct: 69 VEKAE 73

[Close]

BLAST of Clc11G03235 vs. ExPASy TrEMBL
Match: A0A067F7J7 (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0303881mg PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 6.7e-19
Identity = 51/63 (80.95%), Postives = 58/63 (92.06%), Query Frame = 0


Query: 1  MQWISYVTQSGRLMHVMMTKIHNVGKVYHFRARRQMAESVGQIARFRRRYEKGIAENVEN 60
          MQWISYVTQSGRLMHVMMTKIHNVGKVYHFRARRQMA+S+GQ+A+FRRRYE+ +  + EN
Sbjct: 12 MQWISYVTQSGRLMHVMMTKIHNVGKVYHFRARRQMAQSIGQVAKFRRRYEQQL--DAEN 71

Query: 61 AEK 64
           EK
Sbjct: 72 NEK 72

[Close]

BLAST of Clc11G03235 vs. ExPASy TrEMBL
Match: A0A6P4BJJ8 (uncharacterized protein LOC107432615 OS=Ziziphus jujuba OX=326968 GN=LOC107432615 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 8.8e-19
Identity = 50/59 (84.75%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 1  MQWISYVTQSGRLMHVMMTKIHNVGKVYHFRARRQMAESVGQIARFRRRYEKGIAENVE 60
          MQWISYVTQSGRLMHVMMTKIHNVGKVYH +A+RQMAE+VGQIA+FR+RYEKGI E  E
Sbjct: 9  MQWISYVTQSGRLMHVMMTKIHNVGKVYHLKAKRQMAENVGQIAKFRQRYEKGIPEKHE 67

[Close]

BLAST of Clc11G03235 vs. TAIR 10
Match: AT5G55125.1 (Ribosomal protein L31 )

HSP 1 Score: 92.4 bits (228), Expect = 3.0e-19
Identity = 44/59 (74.58%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 1  MQWISYVTQSGRLMHVMMTKIHNVGKVYHFRARRQMAESVGQIARFRRRYEKGIAENVE 60
          MQWISYVTQSGRLMHVMMT+IH+VGKVYHF A+RQMA+S+GQIA+F+RR+ +  AE  E
Sbjct: 9  MQWISYVTQSGRLMHVMMTRIHHVGKVYHFGAKRQMAQSIGQIAKFKRRFNEQEAEAAE 67

[Close]

BLAST of Clc11G03235 vs. TAIR 10
Match: AT5G55125.2 (Ribosomal protein L31 )

HSP 1 Score: 92.4 bits (228), Expect = 3.0e-19
Identity = 44/59 (74.58%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 1  MQWISYVTQSGRLMHVMMTKIHNVGKVYHFRARRQMAESVGQIARFRRRYEKGIAENVE 60
          MQWISYVTQSGRLMHVMMT+IH+VGKVYHF A+RQMA+S+GQIA+F+RR+ +  AE  E
Sbjct: 9  MQWISYVTQSGRLMHVMMTRIHHVGKVYHFGAKRQMAQSIGQIAKFKRRFNEQEAEAAE 67

The following BLAST results are available for this feature:

BLAST of Clc11G03235 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143125.1	8.4e-24	93.65	uncharacterized protein LOC111013069 [Momordica charantia] >XP_022143126.1 uncha...	[more]
XP_038890309.1	6.0e-22	90.48	uncharacterized protein LOC120079925 [Benincasa hispida] >XP_038890310.1 unchara...	[more]
XP_022946219.1	6.7e-21	83.08	uncharacterized protein LOC111450371 [Cucurbita moschata]	[more]
XP_023547264.1	2.5e-20	83.08	uncharacterized protein LOC111806134 [Cucurbita pepo subsp. pepo]	[more]
KAG7030387.1	3.3e-20	81.54	hypothetical protein SDJN02_08734, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Clc11G03235 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc11G03235 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CPB3	4.1e-24	93.65	uncharacterized protein LOC111013069 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1G367	3.2e-21	83.08	uncharacterized protein LOC111450371 OS=Cucurbita moschata OX=3662 GN=LOC1114503...	[more]
A0A6J1KGB8	2.1e-20	83.08	uncharacterized protein LOC111493644 OS=Cucurbita maxima OX=3661 GN=LOC111493644...	[more]
A0A067F7J7	6.7e-19	80.95	Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0303881...	[more]
A0A6P4BJJ8	8.8e-19	84.75	uncharacterized protein LOC107432615 OS=Ziziphus jujuba OX=326968 GN=LOC10743261...	[more]

BLAST of Clc11G03235 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55125.1	3.0e-19	74.58	Ribosomal protein L31	[more]
AT5G55125.2	3.0e-19	74.58	Ribosomal protein L31	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37264	RIBOSOMAL PROTEIN L31	coord: 1..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G03235.1	Clc11G03235.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome