Clc11G03040 (gene) Watermelon (cordophanus) v2

Overview
NameClc11G03040
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionEarly nodulin 93 protein
LocationClcChr11: 2962797 .. 2965318 (-)
RNA-Seq ExpressionClc11G03040
SyntenyClc11G03040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCAATCTCCCCTGTTTTCTTACTGATTCTGCAGCGTTTTTTTGTTTCTTCATCTTCCAACAATGGCCTCTCATGACCCAAAAGTGGCAATGGCTAAGCGCTGTGCTAAAGGTAACGCTTTTCATTATTCTTTTTTTTTTTTTTTTCCTGGGATCTTTTATGAGGGGGGGAAAAAAGGTAATGGGTATGTATGGTTTTTACTTGCTTTTCTTTGATGATACCATAATGTGATGTATTTGATGAGCTGGGTCGTTGAAAATAGTGGCTGATTGATCATAATAAGGGGTTTAAGATTTGGTTTTTTGATAATGCCTTTTAGCTGTTCGACGAAATTCCCCAAAGAGGGATTTGATCCTTAAGCTTCAAGAGTGGATTGAAAGTAAAAGGGTTCTTTTTTTAATATGATTGTGGGAGCATTTTCAACTTCCCCCACCAACTCTTCTTTTTTAGTTAATGATTTAAGGAAAAGCTAAAGAGAGAGATGGGATTTGATCCATGCGGATGTTGATTGGATATATGCTGCATTTTTGACGGATTTGATTGTTTTGATTCATTGGCTGGTGGACCATGATCCACTTCAGATTTGGTGCCATGAAAATAAATGAATTCTGAGATGTTGTGTTTCTAATAATTTCTCTTCACGAATTTAGCTTTTATCATCAGTATCTGAAGTTAATGGGTAAGGATTCTTCTTTTTCTGATGGACAGAGGGTGTGATAGCAGGAGCAAAAGCAGCTGCAATTGCAAGTATTGCCACTGCCATTCCTACTGTAAGTTCCCAACTTCATAATGCACATACAGATGCTTTATCTTCCCTTTTTTGGGAAATTATTAATGTCACTCATCAGCTTCTGCTTTTATGATAAAAATATGACTAAATTAACTGAAGAACTAAATGCTCATCTGATGTAGATTACCTTAAGAGGCATAACTCAAATCTTGAATTGATGTGGATACATGGTTTTATGGCTGGACTAACATACACGAACTATAGTTTATTTTGAGTATTTGGATCGAGTCTCTTTGTCTTAGATTAAAAGAAAAAAAGAAAAAAGAAAAAAAAAAATACTTTGTATGAAAAGGTTATAATTTTGAAGCTTATTGTTCCCCTAAAATTTTGCAAATTCAAAAGGTAAAATTTTGTCACTCCCTACGAAAATTGCTAAATTTTTCCCTAATCGGGATTGAGGCACCCTGAGCTTTGCCCTTTCACCCCTCATGGTGGTGTAGAGAGCTAGTTGCTGATGGTCACCACGTTCTTTGACCCAAAGAATGAAAGAGGCTACATAACATGTTTGGGAGTGATTTTGAAGTAAATCATCCAAAATCAATTCTTATGGTATGAAAATTTAGTATTAAAGTGTAAAACCAAACTTTAAACCAATTAAAAGTATGTCGGGATTGAGGCACCATGAGTTGCCTTTCACTCCTTGTGGTGGTGTAGAGCTAGCTCCTACTGGCCACCACATCCTTTGACCTAAACAATGTGAGATGCTACCTAACATGATTTTGAGTGATTTTAAAATAGTTGAACTCACTTTGTCATGTGATCATTCAAAATCAATGTAAAACCTAACATCAAACCAACTAAAAGTATGTTGGGATTGAGGCACCATGAGCTGCCCTTTCACCCCTTGCGGCAGTGTAGAGCTAGTTGCTGCTAGCCACCACGTCCTTTGACCCGAACAATGAGAGAGGCTACCTAGCCTGTTTTGGAGTGATGTTGAAATAGAAATAATTGAAATCACTTTGTCATGTAATCATTCAAAACCAATTCTTATGGTATGAAAATTTAGTATTGATGTCTAAAACCAAACATCAAACCGATTAGAAGTATGTTTGAGGGTGACTTTAAATCCAAATATCGTAAAAACTAGAGTCAAGGAAGCCAAACTATAACTAGAATTGTTATTAATTTGCAGTTGGCCAGTGTGAGGATGCTGCCATGGGCAAAAGCTAATCTGAATCACACAGCTCAAGCTCTCATAATCTCCACAGGTTTTGTAGCTTTTTTTTCCCCCTCTTAGCAGCCAAGTCATTATATGGTTTCATTTGCTTTTCTTTACTAAAATGAAAAAGGGTTGATTGTTCAATTCAATGGCAGTGGCTGGAGCAGCATACTTCATAGTGGCTGACAAGACTGTTTTAGCAACAGCAAGAAGGAACTCCTTCAAGCAAAAACCCAACGCTGAAGCATATGAATTCAATTGAATTCTCAACCTTAAAAACTTGAGGGTGGCCATTGGAAGAAGCTAACCTCATCTGGATTTGAGGGCAGGCATTAATTGAAGGAAGATAGCCATCTCAATATTTGCTTGCTTTTGCTCTTTTAATTTACTCTTCGATTTTGTACTAAGAAAATCTATGTAAATCCATTTGCTATTTGAATAAATAAAAATGGATTTTCAGATATTTTTCTCGTAAAATTAGTTGAAGTTGTTCGTTTCACTTTCATATACCATAACATAAGCCACGAGGAATATTTTGTCTACATAATTGGTGAAATAATTGCCAAATCCAAT

mRNA sequence

CTCAATCTCCCCTGTTTTCTTACTGATTCTGCAGCGTTTTTTTGTTTCTTCATCTTCCAACAATGGCCTCTCATGACCCAAAAGTGGCAATGGCTAAGCGCTGTGCTAAAGAGGGTGTGATAGCAGGAGCAAAAGCAGCTGCAATTGCAAGTATTGCCACTGCCATTCCTACTTTGGCCAGTGTGAGGATGCTGCCATGGGCAAAAGCTAATCTGAATCACACAGCTCAAGCTCTCATAATCTCCACAGTGGCTGGAGCAGCATACTTCATAGTGGCTGACAAGACTGTTTTAGCAACAGCAAGAAGGAACTCCTTCAAGCAAAAACCCAACGCTGAAGCATATGAATTCAATTGAATTCTCAACCTTAAAAACTTGAGGGTGGCCATTGGAAGAAGCTAACCTCATCTGGATTTGAGGGCAGGCATTAATTGAAGGAAGATAGCCATCTCAATATTTGCTTGCTTTTGCTCTTTTAATTTACTCTTCGATTTTGTACTAAGAAAATCTATGTAAATCCATTTGCTATTTGAATAAATAAAAATGGATTTTCAGATATTTTTCTCGTAAAATTAGTTGAAGTTGTTCGTTTCACTTTCATATACCATAACATAAGCCACGAGGAATATTTTGTCTACATAATTGGTGAAATAATTGCCAAATCCAAT

Coding sequence (CDS)

ATGGCCTCTCATGACCCAAAAGTGGCAATGGCTAAGCGCTGTGCTAAAGAGGGTGTGATAGCAGGAGCAAAAGCAGCTGCAATTGCAAGTATTGCCACTGCCATTCCTACTTTGGCCAGTGTGAGGATGCTGCCATGGGCAAAAGCTAATCTGAATCACACAGCTCAAGCTCTCATAATCTCCACAGTGGCTGGAGCAGCATACTTCATAGTGGCTGACAAGACTGTTTTAGCAACAGCAAGAAGGAACTCCTTCAAGCAAAAACCCAACGCTGAAGCATATGAATTCAATTGA

Protein sequence

MASHDPKVAMAKRCAKEGVIAGAKAAAIASIATAIPTLASVRMLPWAKANLNHTAQALIISTVAGAAYFIVADKTVLATARRNSFKQKPNAEAYEFN
Homology
[Close]
BLAST of Clc11G03040 vs. NCBI nr
Match: XP_038889722.1 (early nodulin-93-like [Benincasa hispida])

HSP 1 Score: 177.2 bits (448), Expect = 7.0e-41
Identity = 95/97 (97.94%), Postives = 96/97 (98.97%), Query Frame = 0 

Query: 1   MASHDPKVAMAKRCAKEGVIAGAKAAAIASIATAIPTLASVRMLPWAKANLNHTAQALII 60
           +ASHDPKVAMAKRCAKEGVIAGAKAAAIASIATAIPTLASVRMLPWAKANLNHTAQALII
Sbjct: 15  LASHDPKVAMAKRCAKEGVIAGAKAAAIASIATAIPTLASVRMLPWAKANLNHTAQALII 74

Query: 61  STVAGAAYFIVADKTVLATARRNSFKQKPNAEAYEFN 98
           STVAGAAYFIVADKTVLATARRNSFKQKPN EAYEFN
Sbjct: 75  STVAGAAYFIVADKTVLATARRNSFKQKPNTEAYEFN 111

[Close]
BLAST of Clc11G03040 vs. NCBI nr
Match: XP_004139321.1 (early nodulin-93 [Cucumis sativus] >KGN60663.1 hypothetical protein Csa_019393 [Cucumis sativus])

HSP 1 Score: 173.3 bits (438), Expect = 1.0e-39
Identity = 93/97 (95.88%), Postives = 95/97 (97.94%), Query Frame = 0 

Query: 1   MASHDPKVAMAKRCAKEGVIAGAKAAAIASIATAIPTLASVRMLPWAKANLNHTAQALII 60
           +ASHDPKVAMAKRCAKEGVIAGAKAAAIASIATAIPT ASVRMLPWAKA+LNHTAQALII
Sbjct: 15  IASHDPKVAMAKRCAKEGVIAGAKAAAIASIATAIPTFASVRMLPWAKAHLNHTAQALII 74

Query: 61  STVAGAAYFIVADKTVLATARRNSFKQKPNAEAYEFN 98
           STVAGAAYFIVADKTVLATARRNSFKQKPN EAYEFN
Sbjct: 75  STVAGAAYFIVADKTVLATARRNSFKQKPNTEAYEFN 111

[Close]
BLAST of Clc11G03040 vs. NCBI nr
Match: KAA0061591.1 (early nodulin-93-like [Cucumis melo var. makuwa] >TYJ97800.1 early nodulin-93-like [Cucumis melo var. makuwa])

HSP 1 Score: 172.6 bits (436), Expect = 1.7e-39
Identity = 92/97 (94.85%), Postives = 95/97 (97.94%), Query Frame = 0 

Query: 1   MASHDPKVAMAKRCAKEGVIAGAKAAAIASIATAIPTLASVRMLPWAKANLNHTAQALII 60
           +ASHDPKVAMAKRCA+EGVIAGAKAAAIASIATAIPT ASVRMLPWAKA+LNHTAQALII
Sbjct: 15  LASHDPKVAMAKRCAREGVIAGAKAAAIASIATAIPTFASVRMLPWAKAHLNHTAQALII 74

Query: 61  STVAGAAYFIVADKTVLATARRNSFKQKPNAEAYEFN 98
           STVAGAAYFIVADKTVLATARRNSFKQKPN EAYEFN
Sbjct: 75  STVAGAAYFIVADKTVLATARRNSFKQKPNTEAYEFN 111

[Close]
BLAST of Clc11G03040 vs. NCBI nr
Match: XP_008457774.1 (PREDICTED: early nodulin-93-like [Cucumis melo])

HSP 1 Score: 172.6 bits (436), Expect = 1.7e-39
Identity = 92/97 (94.85%), Postives = 95/97 (97.94%), Query Frame = 0 

Query: 1   MASHDPKVAMAKRCAKEGVIAGAKAAAIASIATAIPTLASVRMLPWAKANLNHTAQALII 60
           +ASHDPKVAMAKRCA+EGVIAGAKAAAIASIATAIPT ASVRMLPWAKA+LNHTAQALII
Sbjct: 53  LASHDPKVAMAKRCAREGVIAGAKAAAIASIATAIPTFASVRMLPWAKAHLNHTAQALII 112

Query: 61  STVAGAAYFIVADKTVLATARRNSFKQKPNAEAYEFN 98
           STVAGAAYFIVADKTVLATARRNSFKQKPN EAYEFN
Sbjct: 113 STVAGAAYFIVADKTVLATARRNSFKQKPNTEAYEFN 149

[Close]
BLAST of Clc11G03040 vs. NCBI nr
Match: XP_023545661.1 (early nodulin-93-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 172.6 bits (436), Expect = 1.7e-39
Identity = 92/97 (94.85%), Postives = 95/97 (97.94%), Query Frame = 0 

Query: 1   MASHDPKVAMAKRCAKEGVIAGAKAAAIASIATAIPTLASVRMLPWAKANLNHTAQALII 60
           +ASHDPKVAMAKRCA+EGVIAGAKAAAIASIATAIPTLASVRMLPWAKANLNH AQALII
Sbjct: 15  LASHDPKVAMAKRCAREGVIAGAKAAAIASIATAIPTLASVRMLPWAKANLNHAAQALII 74

Query: 61  STVAGAAYFIVADKTVLATARRNSFKQKPNAEAYEFN 98
           S+VAGAAYFIVADKTVLATARRNSFKQKPNAE YEFN
Sbjct: 75  SSVAGAAYFIVADKTVLATARRNSFKQKPNAETYEFN 111

[Close]
BLAST of Clc11G03040 vs. ExPASy Swiss-Prot
Match: Q02921 (Early nodulin-93 OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 5.2e-31
Identity = 72/93 (77.42%), Postives = 82/93 (88.17%), Query Frame = 0 

Query: 1   MASHDPKVAMAKRCAKEGVIAGAKAAAIASIATAIPTLASVRMLPWAKANLNHTAQALII 60
           +AS D K+A AKRC+ EGV+AGAKAA +AS+A+AIPTLASVRMLPWA+ANLNHTAQALII
Sbjct: 13  LASLDQKLAFAKRCSHEGVLAGAKAAVVASVASAIPTLASVRMLPWARANLNHTAQALII 72

Query: 61  STVAGAAYFIVADKTVLATARRNSFKQKPNAEA 94
           ST   AAYFIVADKTVLATAR+NSF Q  N+EA
Sbjct: 73  STATAAAYFIVADKTVLATARKNSFNQPSNSEA 105

[Close]
BLAST of Clc11G03040 vs. ExPASy TrEMBL
Match: A0A0A0LFY1 (Early nodulin 93 protein OS=Cucumis sativus OX=3659 GN=Csa_2G006090 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 4.9e-40
Identity = 93/97 (95.88%), Postives = 95/97 (97.94%), Query Frame = 0 

Query: 1   MASHDPKVAMAKRCAKEGVIAGAKAAAIASIATAIPTLASVRMLPWAKANLNHTAQALII 60
           +ASHDPKVAMAKRCAKEGVIAGAKAAAIASIATAIPT ASVRMLPWAKA+LNHTAQALII
Sbjct: 15  IASHDPKVAMAKRCAKEGVIAGAKAAAIASIATAIPTFASVRMLPWAKAHLNHTAQALII 74

Query: 61  STVAGAAYFIVADKTVLATARRNSFKQKPNAEAYEFN 98
           STVAGAAYFIVADKTVLATARRNSFKQKPN EAYEFN
Sbjct: 75  STVAGAAYFIVADKTVLATARRNSFKQKPNTEAYEFN 111

[Close]
BLAST of Clc11G03040 vs. ExPASy TrEMBL
Match: A0A5A7V781 (Early nodulin-93-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00100 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 8.3e-40
Identity = 92/97 (94.85%), Postives = 95/97 (97.94%), Query Frame = 0 

Query: 1   MASHDPKVAMAKRCAKEGVIAGAKAAAIASIATAIPTLASVRMLPWAKANLNHTAQALII 60
           +ASHDPKVAMAKRCA+EGVIAGAKAAAIASIATAIPT ASVRMLPWAKA+LNHTAQALII
Sbjct: 15  LASHDPKVAMAKRCAREGVIAGAKAAAIASIATAIPTFASVRMLPWAKAHLNHTAQALII 74

Query: 61  STVAGAAYFIVADKTVLATARRNSFKQKPNAEAYEFN 98
           STVAGAAYFIVADKTVLATARRNSFKQKPN EAYEFN
Sbjct: 75  STVAGAAYFIVADKTVLATARRNSFKQKPNTEAYEFN 111

[Close]
BLAST of Clc11G03040 vs. ExPASy TrEMBL
Match: A0A1S3C6F4 (early nodulin-93-like OS=Cucumis melo OX=3656 GN=LOC103497382 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 8.3e-40
Identity = 92/97 (94.85%), Postives = 95/97 (97.94%), Query Frame = 0 

Query: 1   MASHDPKVAMAKRCAKEGVIAGAKAAAIASIATAIPTLASVRMLPWAKANLNHTAQALII 60
           +ASHDPKVAMAKRCA+EGVIAGAKAAAIASIATAIPT ASVRMLPWAKA+LNHTAQALII
Sbjct: 53  LASHDPKVAMAKRCAREGVIAGAKAAAIASIATAIPTFASVRMLPWAKAHLNHTAQALII 112

Query: 61  STVAGAAYFIVADKTVLATARRNSFKQKPNAEAYEFN 98
           STVAGAAYFIVADKTVLATARRNSFKQKPN EAYEFN
Sbjct: 113 STVAGAAYFIVADKTVLATARRNSFKQKPNTEAYEFN 149

[Close]
BLAST of Clc11G03040 vs. ExPASy TrEMBL
Match: A0A6J1CPK5 (early nodulin-93-like OS=Momordica charantia OX=3673 GN=LOC111013010 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.4e-39
Identity = 92/97 (94.85%), Postives = 94/97 (96.91%), Query Frame = 0 

Query: 1   MASHDPKVAMAKRCAKEGVIAGAKAAAIASIATAIPTLASVRMLPWAKANLNHTAQALII 60
           +A HDPKVAMAKRCAKEGVIAGAKAAAIASIATAIPTLASVRMLPWAKA+LNHTAQALII
Sbjct: 15  LAPHDPKVAMAKRCAKEGVIAGAKAAAIASIATAIPTLASVRMLPWAKAHLNHTAQALII 74

Query: 61  STVAGAAYFIVADKTVLATARRNSFKQKPNAEAYEFN 98
           STVAGAAYFIVADKTVLATARRNSFKQKPN E YEFN
Sbjct: 75  STVAGAAYFIVADKTVLATARRNSFKQKPNTETYEFN 111

[Close]
BLAST of Clc11G03040 vs. ExPASy TrEMBL
Match: A0A6J1KEY8 (early nodulin-93-like OS=Cucurbita maxima OX=3661 GN=LOC111493696 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.8e-39
Identity = 91/97 (93.81%), Postives = 95/97 (97.94%), Query Frame = 0 

Query: 1   MASHDPKVAMAKRCAKEGVIAGAKAAAIASIATAIPTLASVRMLPWAKANLNHTAQALII 60
           +ASHDPKVAMAKRCA+EGVIAGAKAAAIASIATAIPTLASVRMLPWAKANLNH AQALII
Sbjct: 15  LASHDPKVAMAKRCAREGVIAGAKAAAIASIATAIPTLASVRMLPWAKANLNHAAQALII 74

Query: 61  STVAGAAYFIVADKTVLATARRNSFKQKPNAEAYEFN 98
           S+VAGAAYFIVADKTVLATARRNSFKQKPNAE Y+FN
Sbjct: 75  SSVAGAAYFIVADKTVLATARRNSFKQKPNAETYDFN 111

[Close]
BLAST of Clc11G03040 vs. TAIR 10
Match: AT5G25940.1 (early nodulin-related )

HSP 1 Score: 92.8 bits (229), Expect = 1.6e-19
Identity = 51/81 (62.96%), Postives = 66/81 (81.48%), Query Frame = 0 

Query: 7   KVAMAKRCAKEGVIAGAKAAAIASIATAIPTLASVRMLPWAKANLNHTAQALIISTVAGA 66
           K+  A+   + G IAGAKAAA+A++A+AIPT+A+VRM PWAKANLN+TAQALIIS+ + A
Sbjct: 26  KIHRAETSKQAGAIAGAKAAAVAAVASAIPTVAAVRMFPWAKANLNYTAQALIISSASIA 85

Query: 67  AYFIVADKTVLATARRNSFKQ 88
           A+FI ADKT+L  ARRN+  Q
Sbjct: 86  AFFITADKTILQGARRNTEAQ 106

The following BLAST results are available for this feature:
BLAST of Clc11G03040 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038889722.17.0e-4197.94early nodulin-93-like [Benincasa hispida][more]
XP_004139321.11.0e-3995.88early nodulin-93 [Cucumis sativus] >KGN60663.1 hypothetical protein Csa_019393 [... [more]
KAA0061591.11.7e-3994.85early nodulin-93-like [Cucumis melo var. makuwa] >TYJ97800.1 early nodulin-93-li... [more]
XP_008457774.11.7e-3994.85PREDICTED: early nodulin-93-like [Cucumis melo][more]
XP_023545661.11.7e-3994.85early nodulin-93-like [Cucurbita pepo subsp. pepo][more]
BLAST of Clc11G03040 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q029215.2e-3177.42Early nodulin-93 OS=Glycine max OX=3847 PE=2 SV=1[more]
BLAST of Clc11G03040 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LFY14.9e-4095.88Early nodulin 93 protein OS=Cucumis sativus OX=3659 GN=Csa_2G006090 PE=4 SV=1[more]
A0A5A7V7818.3e-4094.85Early nodulin-93-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold28... [more]
A0A1S3C6F48.3e-4094.85early nodulin-93-like OS=Cucumis melo OX=3656 GN=LOC103497382 PE=4 SV=1[more]
A0A6J1CPK51.4e-3994.85early nodulin-93-like OS=Momordica charantia OX=3673 GN=LOC111013010 PE=4 SV=1[more]
A0A6J1KEY81.8e-3993.81early nodulin-93-like OS=Cucurbita maxima OX=3661 GN=LOC111493696 PE=4 SV=1[more]
BLAST of Clc11G03040 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G25940.11.6e-1962.96early nodulin-related [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005050Early nodulin 93 ENOD93 proteinPFAMPF03386ENOD93coord: 7..84
e-value: 8.4E-39
score: 131.3
IPR005050Early nodulin 93 ENOD93 proteinPANTHERPTHR33605EARLY NODULIN-93coord: 3..90

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc11G03040.1Clc11G03040.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane