Clc11G01340 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G01340
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	DNA repair protein XRCC2 homolog
Location	ClcChr11: 1404885 .. 1414566 (+)
RNA-Seq Expression	Clc11G01340
Synteny	Clc11G01340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATCTCTCGTTCAAAATTAACAAATAAAGTATAAAACTCAAGTCAAGTTGAAGTGGCTCGGCAATTTCCCTCCAAATCCCTTGCCCGCCGCTCTGGGGAACAAGGGGCTTATTATGGCGCTCAGTCAGTGGATCGACGGCGATGAGAGCGCCTTGGAAATGCTTGCCAGAGTTCTCAAAGAGCGAACCTCCTTGGTTGTTCCGCCTCTCCACAGAGTTCCTCTCCGCGTTGGCAATGTGGTCGAACTTGTTGGACCTTCTGGTTCTGCCAAAACGCAGATCTTAATCCAGGTCCAATTATCAAGTTCAATCTCTCCATTTGAACTTCTTGCATGATTTATATCTGATATATCCATCACATATTGATGGTGATTTACCTCGAAAGCATGAGAACAATTTGTCTGCCATTATAAGTAGACCGATTCTGTCTTACCAAAAAAAAAGTAGACTGCTTCTGTGAGCAGGCTGCAGTTAATTGCATTCTTCCAAAGGAGTGGAATGGAATCCGCTATGGTGGCTTGGAGTGCTCAGTGGTGTTCATTGACTTGGATTGTCGTCTTGACATCACAAGGCTGTCCCAAGTTCTGAAGCTTCGAATTTTGGAAGCCATTAGCAATGGTGAGCTATTTGTGCCATTTAATATTGATAAAATGTTACCTTCAAGATTATATCGACGAGCTGCAATTCTGCTCAATGATATCTCGTAATGTCTTGGGTTTTTTCTAGGATTTGTTGCGTCTTTGAATTATTTTTCTGTACGCGTGTCTTCTTCTGTTGTACATTTGATATAGAGCTAGTCTTGATGATGTCTATTTTGCTTGCCTGTGAAGAAAATAGCGCTCTCCAGTCTCCAGACTGAAGTTTTGACTGCAAATAGTCTCTTTATTGTAGAAATAATAGACAACCTTGGAATCATGTTCCTCTCCCCTCTCTCCTCCCTTCCCCCTACCCACCCACTCACCCACCGTGCCATAAACTGCAACCACGATACCTTTCCTTCATCTTTCGAACCTACACCGATGCTGTCCACCAAGTCTGCCGAACTAGAACAAAGCAATCTCAATAGAAAGGAAACTTTTTTGATTGAAGTAGACCCAACCTGACGAGGCACCCGCATTCAAATCTCAGAGTCTTCCAAAGACAAAGCTTCTTCCTTATAGATTCACTGGAGTACATTGGATGGATCACATATACTCTTACATTCGTTCTTATGCACCCTCGAAAGTTGAATCAGAAATTCTTCAAAGAAATAAGGGTAGATGATCAAATAGTTTGGATTGATAAATCTCCACAGAGAGTAGCCTTTTGGTTTCTTGCTAGCCCAACAGATGGACACTAGTGATATGATCGGGGTGTTCCTCCTTCACCAGCCCTTTTGTGAGAAGGGTCGGTTTTTATGGCTTATTAGGTTGTGTGCTATTTTACGAGTTCATTGGGGAAGCAGAATAACAAGGTGTTTAGAGGGTTGGAGAGGGATCCTAGTGATGTTTAGTTCCTTGTTAAATTTCTTGTTTCTCTCTAGGTTTCAATTTCAAAATCTTTTGTAATTATTCTATATGCACTATTTTGTATAACTGGAGCCCCTTCCTTTTAGTGGGGTATCCTTCTTTTGTGGCTTTTTTTTCTTCGTGCATTTTTTCTCAATGAAAGTTGTTTCAGTTAAGTTAAAAAAAAGTTAGACCATACACATTAAAATTCGATCTCTTTCCCACTAAGGAAAGAAAACTTTACCGATAAGGTATAGCCTCCTTTAATAAACTCCATTGCGTTAATTTTGGTATCATCCCACATAATCAACATCCCACTTGATCTACCAAAAAATTCCACAGTAATCCAACAAATACCATTTGAACTCCATAAAGATTTAATGAAACAAATATCAAAAGAACCTGTCCTTGTTTCTTGAATTAAAACATCTACAAGATTTTCTTCCCCAAGAATTCTGATATTCCATGAAATAATCTTCATAATATCAACAAATTACTTAGACTTTTCTGAACATTTTCCTTTTTATTATATCAATGAGAACTTGTTTCTTTATCTTATAAAAAAAAAAAAAAGCTATTGATTTGAAAAATAACGCAGTTAGAACTAAGGAACCTTGTGCTATGCTCTCAGCAAACTTTATACTTAAGGTTTATGTGCTAAAACTAGGGCTAAATTTTCTAGGATCCTCAAACACAGGAGATCGGGAAAATTTTGATGCACTATATGCTACATGCTTGAGAAGATTCTTTTACATCCGTTGCTATGACAGTTTTGAATTTCTTGCCACTCTCAAGGTAAGATTCTTCTTATTTAAAAGAAAGAAAGCCTTCTGCATGCATTTCGTTCATACACTACCTTTTGTTTTTGTTTTTGTTTTTTTTTTATTTTTATGAAAAACAAATTTCATTGATAAATGAAATAACAAAAGATGAATTAGATTGAAGTTTCAATGTGGAAGCCAAAAATGTTATAACTACTTGTAAAAATGTTAAACTAACAGGAACTCCATAGCTTATATTTTTAGGTTTAATGGTGATTTAAAATGGTATCAAAGTAGTAGGTCTTGTGTTTATACTATTTTAATTTAGCCTCTCCTCTTTAGGAGTCAGTTTTTTTGGTAAAAGTCTTAAAAAGGTGAAGTTCTTTATTGGCCATTCATAGAAGAATCCATACCTTGGGCTCTCGAGGAAGTTGCCATCATTGGGCTGTTTTCATTTTATTCTTTGTTGGAGGGTGGAAGAAGGTTTGGATAATTTATTTTTGAGCTGTAATTACATTCACTCGATTTGGAACTATTTTTTTTGGATTGTTCAACATCCAGTTAAGTACAAAGCTTTTAGTGATATGATCAAGGTGCTCCTCCTCCATTTTTCGTTTGGGGAAAGATAGTTTTTTATGGAAGGCCGGGGTCTATGTTTGTTGTGGAATATTTGGGGGAGAGAAATAATAGGATTTTTAGAGGGATTGAGCGGAATCTGGTTGATGTTTGGTCCCTTGTGAATTTTAATGCTTCTCTTTAGGCGTGGGTAACAAGATCCTTTTTTATTCACTAGGTCATATTTTGTTAGATTGGAGGCCCTTCCTCTAGGGTGCTCCCTTGTGGCCTTTGTTTTCTTGTATGTCCTTGTATCCTTCTCCTTCTCCTTCTCCTTCTTCTTCTTCATGTATGCCCTTGTATCCTTCTCCTTCTCCTTCTCCTTCTTCTTCTTCATTTTTCTTTTGCAATTATTCACTAGGTCATTTTTTGTTAGATTGGAGGCCCTTCCTCTAAGGTGCTCCCTTTTGTGGCCTTTGTCTTCTTGTATGCCCTTGTATTTTTTTCCCTCTCTCTCAATGAAAGTTGGTCTTTTTATAAAAAAAGAAAGGATATAATTACAATTACACAAAAAGGGGTAACAACAATGCAACATTCTTTATTGGTCTCTCTTCTCACTTCTTTTGCTACTTGAGCTTTACCCCTTTCTATTTAAATCTTTGGGAAGCCAAGATCTCAAAGAATGCTGGAAAACACCGAATTACATAGACTCAATTGATATGACTCTCAAAGTATAGGGGTATAAATTGAATTTTTCTCAAAAAGTTATTGAGATGCAGTATAATAGAATGTTAGAAAGCACTGAATTACAAAGATTCAACCTACCTCCATAATTGAAATCTCTTTGACTAGCCAATTTCTTCGTAATTTACTCCATGAGGGGCCACCAAAAGAGGCAGTTTTAGGGTGACCTCTTAGTGGTAGACCAAGATAAAGGAAAGTAAGGATTCAACCTTACATGAAGCCTGGAAGCTACAAGAGACGGCTTTGTATTTTCTTCATTTAACCCTCAAATGGTAGAGTTCTTCCAATTGATTTTAAAACCTGATCGGCATTCCAAAAACCTGATGGCCGTTAAAAATTTCACTGTCTTTCTTATTAAACAATTCCAGTGTTTTGATCAAAATATCCAGCATTTTAAATCTCCTTTTTTTATCAGCCGCTGTACTTTTAGTTGGCTCTTCACAATTATGTGCAACCTGCAATCTATAAAATTTGTCTATATAATTCTTTAGAGCTTTTGGATTTCAGACCATGCACCATAAACTTCAAAAAGAAAGAGATGACCTTGGAGTTGGGTTACATCTACTTGTGATTGACAGGTTTGTGCTAAAAATAATTTGGAACCTTGTGATGTGTCTCCTGCTAGATAAAAATTTTAATTTCTCCTTAGTTTTTGATATATTTCATGAACTTGAAAAGATAAAGATGTATGCATTATTATATATATATATATTTTCTATCTTCCTCTTCCATGCCATATATGATGCCAAGGACTATAAATTGCTTTTGCTAGTAAGAATTGTATTCACTTTCATTGTTTTTAATTTGTTAATTATTATTATTAATTTTTTGGATAGGAAACAATTTCATTGATTAAATGAAATGATACAAAAGATATACCCATCCAAAGGGGTTACAAAAGATCCCCCCAGTTTGCAAGGGGAGTGTTTAAGCTGTAATTGCTAAAACGATTCATATTTGTACACCAGAAAAAGCATAAAAGATTGCTATATCCAAAATGTTCTGTGGTGTGCATTCACGATATTGAAAAATCCTCGAGTTTCTTTCACTATATATTCTCCCGAGGATAGCCTTGATCAAAAAGGTCATGGAGTAGCTTTTGTGGACGTGGTTGTACAGAAGCAAATGGAGGCAATCTTTTGGCAAGAGCCAGTGGGACAATGCTCCATCCAAAGGCAGAGAATATCTCATCCCAAACTTCTCTTGTGTAGGAGCAACGAATGAGAATATGACTGAGTGATTCCTCTGGTACCTAGCAAATACCACCAATTTGGGGAAAGAGATACCCAAGGACATTTTTTCTGTAGTCCGTCAAAAGTATTGAGGCAAGAGCGGCTGATTTCCCATAATCAAATCTTTGATTTTATTGGGGCAAGGGCTCTTTCCAATTCTTCACGTATATCTCTTTATCAATGTTTTGATTCCCAGATACAAGGTTGTTGAGTAATGATTTTATAGAAAAGTTCCCCCTCTGTCCTGACAGTCTGTGAATTGAATGGAGGAAATTTTATTGGTAAGCGCAGCCCATTCCTCAGTTTCTTTTTCCTTAATGAAAGTTCAATACCCACTTAGTCAACAGGGATCCGTTTAATCAGTGATGCCCAAGCCACCTTCATTAATAGAGTTTTTGACTTTTTCCCATATTAAAGAGATGGTTAAAGAAACGGTTAAAGAAACATTTCATTGACGAATGAAATTAGGGGAGAACCTCAAACACCTAAAAGTGATTACAAAAGAGAACGCCAATTACATATAAGTTAAAATGAGAGAAAGGGTGCTTTGTTTTACACCATGAAAAAGCAATAGACAAAACAAACTCCATAAAACAATAAAAAATGGTTACTTTGCTTTGTTTTACACCATGAAAAAAAATTACTTTCAATTGTAAATATTAATGTTGAATCTGGGGATCATTACTTTTCTTCTTTCTGATTAGTATTGGAGCTTATCATTGGGTTGATCGTGGCTCTTCATCCTTGCCTCTGTGGGGTCACAACAGGTAATGCCTTTAAATTTTAAATTGTTTAATTCTATATAAATACTTATACACACTTATCAAATCAGAATACCCAACAAAATTTGGGAAAAGGACTATTAGTTGCCACCTATTTCATTTTCTGGTTAGACTTTTTTGGGCGTTTCCAATTTAATCTTCCATTAGCTTCTAATTGTGAGTTACTGCTAGAGTGGGTTTGTGAGAGAAAGTTTCCAGCTACTTTTTATCATGTGATTTTTATTATTATTGTTCTATTTTTAACTTTTTTTTTTTTATTGTTATTATTATTATTTTTTCCTCCCATGGATTTCAGCTCCTGACATATTTCTCCATGGATTCTATACTAGCGTTCCATCTGTGGTTTTCTTGAGTTGAAAACCTCTCATAGAATTTGGATAGAGAACACCAAGAAGGCCTTTAATCGAACTACAAATACTTATTTTCAAATCAACTTTTCTAGTTAAGGGCTTAAACTCCCTTTCCTTTGCAGGGGATGCCTTATCTCCCTGGCCTATAAATATTATAGGGATAGGGCCTTTTTCTTTTCAATGACATGATTGTTTTCTTTATATTGTTTCTTATTGTAAAGGAACAAAAAGGGAAAATGTGTTTCAATATTGTAATTTTTTACTCCAAGCCAATGGTAATTTTTTACTCTCTTGCATAAATTCGTGATAATCATCCAAAAAGAAAATGTGTTTCAACAATGTACAGTTCTATTCCCAGTGTTATGAAAATTTAGATATTCACTCTGTGTAGGAAAGGCTTTTCTCTTGCAAATGTGCTAGAAGCTGCAGTAGAAGAGGTTAGAAAGCTTTTGCTGGTGCATCCGAGTATTGTTATTGCTTCAAAAGCAACCATTTTTGGGGATAGATCTTCTGACATAGTTAGACGGTGAGTTTAAGGCCGAAATGGACTTATTTTCTCCTCTGTGAAACAAAAATTGCATGAAGGAATTATGTTTCTTGTACTTTCCTGCCTAATTCAGCTAGTATACTTTACAGGTGATGTGTGCCTAGTCTTAACTGTTTCATTTTCATATTTGAGATATGAATGCTCACCCTGATCCTTAGACTTGCACGCATCTTTCACATGGTCTAAGTACTTTGACAACTTGTTACAATTCTTGAAGACTATTATGCTTAAAATTGCTTGAAGACTTGGTTTTTGCAGATTTGGAGTTCTAAGATAATTTTTTTGAAACAGAAACAACACTTTTCATTGATGAAATGAAAAGACACTAATTCTCAAATTACAATGAGACATAACAAGCAAAGGAAAATAGGATTCGGTCAATGAAATGAAAAGACACTAATTCTCAAATTACAATGAGACATAACAAGCAAAGGAAAATAGGATTCGGTGGGATCAATAGGTGGATATCTCAACTAGTTTGACACACCCATAATACCCTCATCATATCCCAGTATGAGATACATCATTAAAGTAAAATACAAATGACATAACGACTTAAATGATGAAATACAAAGTTAACTTGGAGAAACGAAGGCATTCCATTTTTAACATATCTCCTGAATGGAGTAATCATCGAAAGCCTTGAATTGGGAGCACCATGATGAAGCTAAGAGACGAGCTGAACTTAAGGAGTTATGGTCCCTTGTTTGCTTTCATGTTTCCTAGTGGGCTTCAATTTCGAAGTCTTTTTGTAATTATTCTATAAGCACGATTTTGTATAGTTGGAATCCCTTCTTGTAAAGGGAGTCTCCCCTCTTTGTGGACATGGTTTTTTGTATGTCCGTGTATTCTTTCATTTTTTCTAAAAGAAAAAGTTGTTCTCATAAAAAAAAAAAAAAGTCGAGTTAAACCAAAATGATCTGACCATTCTATGGACTTGTCATGAAACACTCGTTGATTACACTCAAACCATATTTTTGAAACCAAGGCTATGGTTGCATTTGCCCATATTAATTCAGCTTTAGAGGATAAAGCCATATTAACTCAGCTTTAGAGGATGAAGGACCAACCAATATTTGAACAATGTTCTTCTTAACTGAGTTGCCAAGATATGAAGTTATGTATGGCCAATTCTTTTGTCATTCTTGTCCATGTTTTGGTTGCTTCATTATCATTCTCTTTTCTTGGATAGTGGACCACTAGAGTAGATGTTATGCTAGATGTGACCTTGGTTTTCAAATTGGTAAACTTTTTAGGTATTGATATGAGACAAAAATTGTAAGTTTCAGTGTAAGTGGGCTAGGAGCATTAGAGAGACCAAATGACATAACCAATCATTTGAGCAAGCAGAACCAAAATGAACAAACTGTGAAGCAGCGGATTTTAGGACTTTTTAATCCTAACCAGACAAGAATCTGAAAAAAGATCTTCCACTGCAATAGACCAAAAAATCTTTAATTCCAAAGCCAATGAAAGACCAACAAGTAACCGAAAAATATATTCCCAGACTCTGTTGAAGAGAACCCACTCAACGAGAGGAAACCTGAGATCTCTCGAGACCAACTTCTAATATTAAAAAACTATTTGGCTACCACTTCCAAACTTGAAACTGCTAGAGAATCCACTTGTTGCCACAAGTTTGAGATATTAAGCCAAGGGCAGCAATGACTTCTACGAAGTTACTGATGAAGATGATTAGAAACTCCTTTTGATGAACTCAAATACTAACAAATAATCTTCAACCCACAAACAAAAAACTTCCTGATTTTCTGATAGAAGAAGCAATCCAGCTTAATCTTTAGAACTCCATAGGATTGGAGAAAAAATAAAACAGAACAAAACAAAATCAACACAAAACGCTTCGTGATGTGTCTAAAAGAGAAGATTACCATTTGATTGGTCCAGCTTTTCCTCTGTTCTCTCTCCTCTTGTCTTTTCCCATTCCTAACCCCCGTAAAGCCGTTCTGCTTTCTGGTCATCCATGACCATTGTTGTTTCGATATTTATGTTTCTATGCTTCTTTAGATGATATGGCATACTCTAACCCTGACAAATTTGTCAGTGAAAAATCTTTATCAGAGTCAGAACCGAGACATGGGAAACCTGATGGTGGACTAGTTTTGTACCGAGAGTATATGCCTTCTGCATGGCAGGTAATCTATGTAATCGTCTCTGTCTATATTTTCTTTTGGGAAAGCCATAACTTACATATTTAGAAGTATTGCCAAATTGGAATGACCATAGGTCGTTCAATTGTGTTTTTGAGTTTTTCAGTGATGTCAAATTGCAAGTTACACCTAAAGATAATAAGTCTCTCGATCACGTTAACCATGAAGCAACTTAAAGTATCGCCTGAATTAAGAGGGAGACATTTAAAATGTTAGATAACATCATAGTAGTAATTTTTAAAGACAGCCATAGACTATACAAACATAAAGCAAAAACGAAAAGACTGACAAACTTGGGGAGTGACTTTTATTTGTTTATTATTTTTTTGAAGTATTTTCTTCTGGCGATCATATCAAATAGTCAAAAACAAAGTAATTTACATGTTATATATATAAACATACCCCCAATCCCTTACTTTTTTAGAAATTGACATATTGCTGTATATGTGTTGTGTCCATACTTCTTAGATTACAACTGTAAAAATATTTTCATTTTCAGGCACTATCATTAGGATCTTTCTTAAATTATATTACAAATAATGGAAACTAACGTGAAATTTCAATTAGAATACCATTCTGTATACAAGTCTTATTCCATTTTAGTCTAGTACCGAAGTAGAAGGTCTAGAGTGATATTTTAATTTTAAATTTATTGGTGAAAGAGACTCATTTGTCTGGGTTTTTGCAGTCTTTTGTCACGCACAGAGTTTTTGTTCGAAGCTCAGGTCTGATTACATATTATGCCTAAAAAAGTGGAATATGATTTGGTCCACTTTCTGTATATTCAGTCATTAATCTGATGATACTTTTTGTTGCCTTGCAGACGAACATCTTACAGCGAGCAGTTGTGAGCATCAACCAACATATTTTTCTGAATGGCTGCTACCATCCCTTGGTTTCCTCGATAAATTTATTGTGAAAAATGTGAGAACCAAACCATTTTGCTTAAGCTACTTGTAAATAATGAAGTACCATGAAATCTAGAAGCTCAAGCTATATCGATTTGATATTAAAATACTAATATCATAAATGTTTGAAGACAAAGTCGAATGTTCAG

mRNA sequence

CATCTCTCGTTCAAAATTAACAAATAAAGTATAAAACTCAAGTCAAGTTGAAGTGGCTCGGCAATTTCCCTCCAAATCCCTTGCCCGCCGCTCTGGGGAACAAGGGGCTTATTATGGCGCTCAGTCAGTGGATCGACGGCGATGAGAGCGCCTTGGAAATGCTTGCCAGAGTTCTCAAAGAGCGAACCTCCTTGGTTGTTCCGCCTCTCCACAGAGTTCCTCTCCGCGTTGGCAATGTGGTCGAACTTGTTGGACCTTCTGGTTCTGCCAAAACGCAGATCTTAATCCAGGCTGCAGTTAATTGCATTCTTCCAAAGGAGTGGAATGGAATCCGCTATGGTGGCTTGGAGTGCTCAGTGGTGTTCATTGACTTGGATTGTCGTCTTGACATCACAAGGCTGTCCCAAGTTCTGAAGCTTCGAATTTTGGAAGCCATTAGCAATGGATCCTCAAACACAGGAGATCGGGAAAATTTTGATGCACTATATGCTACATGCTTGAGAAGATTCTTTTACATCCGTTGCTATGACAGTTTTGAATTTCTTGCCACTCTCAAGACCATGCACCATAAACTTCAAAAAGAAAGAGATGACCTTGGAGTTGGGTTACATCTACTTGTGATTGACAGTATTGGAGCTTATCATTGGGTTGATCGTGGCTCTTCATCCTTGCCTCTGTGGGGTCACAACAGGAAAGGCTTTTCTCTTGCAAATGTGCTAGAAGCTGCAGTAGAAGAGGTTAGAAAGCTTTTGCTGGTGCATCCGAGTATTGTTATTGCTTCAAAAGCAACCATTTTTGGGGATAGATCTTCTGACATAGTTAGACGTGAAAAATCTTTATCAGAGTCAGAACCGAGACATGGGAAACCTGATGGTGGACTAGTTTTGTACCGAGAGTATATGCCTTCTGCATGGCAGTCTTTTGTCACGCACAGAGTTTTTGTTCGAAGCTCAGACGAACATCTTACAGCGAGCAGTTGTGAGCATCAACCAACATATTTTTCTGAATGGCTGCTACCATCCCTTGGTTTCCTCGATAAATTTATTGTGAAAAATGTGAGAACCAAACCATTTTGCTTAAGCTACTTGTAAATAATGAAGTACCATGAAATCTAGAAGCTCAAGCTATATCGATTTGATATTAAAATACTAATATCATAAATGTTTGAAGACAAAGTCGAATGTTCAG

Coding sequence (CDS)

ATGGCGCTCAGTCAGTGGATCGACGGCGATGAGAGCGCCTTGGAAATGCTTGCCAGAGTTCTCAAAGAGCGAACCTCCTTGGTTGTTCCGCCTCTCCACAGAGTTCCTCTCCGCGTTGGCAATGTGGTCGAACTTGTTGGACCTTCTGGTTCTGCCAAAACGCAGATCTTAATCCAGGCTGCAGTTAATTGCATTCTTCCAAAGGAGTGGAATGGAATCCGCTATGGTGGCTTGGAGTGCTCAGTGGTGTTCATTGACTTGGATTGTCGTCTTGACATCACAAGGCTGTCCCAAGTTCTGAAGCTTCGAATTTTGGAAGCCATTAGCAATGGATCCTCAAACACAGGAGATCGGGAAAATTTTGATGCACTATATGCTACATGCTTGAGAAGATTCTTTTACATCCGTTGCTATGACAGTTTTGAATTTCTTGCCACTCTCAAGACCATGCACCATAAACTTCAAAAAGAAAGAGATGACCTTGGAGTTGGGTTACATCTACTTGTGATTGACAGTATTGGAGCTTATCATTGGGTTGATCGTGGCTCTTCATCCTTGCCTCTGTGGGGTCACAACAGGAAAGGCTTTTCTCTTGCAAATGTGCTAGAAGCTGCAGTAGAAGAGGTTAGAAAGCTTTTGCTGGTGCATCCGAGTATTGTTATTGCTTCAAAAGCAACCATTTTTGGGGATAGATCTTCTGACATAGTTAGACGTGAAAAATCTTTATCAGAGTCAGAACCGAGACATGGGAAACCTGATGGTGGACTAGTTTTGTACCGAGAGTATATGCCTTCTGCATGGCAGTCTTTTGTCACGCACAGAGTTTTTGTTCGAAGCTCAGACGAACATCTTACAGCGAGCAGTTGTGAGCATCAACCAACATATTTTTCTGAATGGCTGCTACCATCCCTTGGTTTCCTCGATAAATTTATTGTGAAAAATGTGAGAACCAAACCATTTTGCTTAAGCTACTTGTAA

Protein sequence

MALSQWIDGDESALEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDITRLSQVLKLRILEAISNGSSNTGDRENFDALYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGVGLHLLVIDSIGAYHWVDRGSSSLPLWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSESEPRHGKPDGGLVLYREYMPSAWQSFVTHRVFVRSSDEHLTASSCEHQPTYFSEWLLPSLGFLDKFIVKNVRTKPFCLSYL

Homology

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BLAST of Clc11G01340 vs. NCBI nr
Match: XP_038891841.1 (DNA repair protein XRCC2 homolog isoform X2 [Benincasa hispida])

HSP 1 Score: 599.0 bits (1543), Expect = 2.5e-167
Identity = 297/314 (94.59%), Postives = 303/314 (96.50%), Query Frame = 0


Query: 1   MALSQWIDGDESALEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60
           MALSQWIDGDESA EMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MALSQWIDGDESASEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDITRLSQVLKLRILEAISNGSSNTGDREN 120
           AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDITRL QVLKLRILEAISNGSS+TGD+EN
Sbjct: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDITRLYQVLKLRILEAISNGSSSTGDQEN 120

Query: 121 FDALYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGVGLHLLVIDSIGAYHWVD 180
           FDAL+ATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERD LGVGLHLLVIDSIGAYHWVD
Sbjct: 121 FDALHATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDGLGVGLHLLVIDSIGAYHWVD 180

Query: 181 RGSSSLPLWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDIVRREK 240
           R SSSLPLWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFG+RSSDIVRRE+
Sbjct: 181 RVSSSLPLWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGNRSSDIVRREQ 240

Query: 241 SLSESEPRHGKPDGGLVLYREYMPSAWQSFVTHRVFVRSSDEHLTASSCEHQPTYFSEWL 300
           SLSESE RHGK DGG VLYREYMPSAWQSFVTHRVFVR SDEH T SSC+ QPTYFSEWL
Sbjct: 241 SLSESESRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRDSDEHPTGSSCDRQPTYFSEWL 300

Query: 301 LPSLGFLDKFIVKN 315
           LPSLGFLDKFIVKN
Sbjct: 301 LPSLGFLDKFIVKN 314

[Close]

BLAST of Clc11G01340 vs. NCBI nr
Match: XP_008456835.1 (PREDICTED: DNA repair protein XRCC2 homolog isoform X1 [Cucumis melo])

HSP 1 Score: 590.9 bits (1522), Expect = 6.8e-165
Identity = 294/325 (90.46%), Postives = 300/325 (92.31%), Query Frame = 0


Query: 1   MALSQWIDGDESALEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60
           M LSQWIDGDESA EML RVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDITRLSQVLKLRILEAISNGSSNTGDREN 120
           AVNCILPKEWNGI YGGL CS VFIDLDCRLDITRL QVLKLRILEAISNGS NTGD EN
Sbjct: 61  AVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVLKLRILEAISNGSLNTGDGEN 120

Query: 121 FDALYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGVGLHLLVIDSIGAYHWVD 180
           FDALYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERD LGVGLHLLVIDSIGAYHWVD
Sbjct: 121 FDALYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDGLGVGLHLLVIDSIGAYHWVD 180

Query: 181 RGSSSLPLWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDIVRREK 240
           R SSSLP WGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIAS+ATIFGDRSS++VRR+K
Sbjct: 181 RISSSLPPWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIASRATIFGDRSSNVVRRDK 240

Query: 241 SLSESEPRHGKPDGGLVLYREYMPSAWQSFVTHRVFVRSSDEHLTASSCEHQPTYFSEWL 300
           SLSESE RHGKPDGGL LYREYMPSAWQSFVTHRVFVR SDEHL  SSCEHQPTY SEWL
Sbjct: 241 SLSESELRHGKPDGGLGLYREYMPSAWQSFVTHRVFVRDSDEHLAFSSCEHQPTYSSEWL 300

Query: 301 LPSLGFLDKFIVKNVRTKPFCLSYL 326
           LPSLGF+DKFIV NVR +   L  L
Sbjct: 301 LPSLGFVDKFIVTNVRNQAIFLKLL 325

[Close]

BLAST of Clc11G01340 vs. NCBI nr
Match: XP_038891840.1 (DNA repair protein XRCC2 homolog isoform X1 [Benincasa hispida])

HSP 1 Score: 587.8 bits (1514), Expect = 5.7e-164
Identity = 297/332 (89.46%), Postives = 303/332 (91.27%), Query Frame = 0


Query: 1   MALSQWIDGDESALEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60
           MALSQWIDGDESA EMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MALSQWIDGDESASEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDITRLSQVLKLRILEAISNGSSNTGDREN 120
           AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDITRL QVLKLRILEAISNGSS+TGD+EN
Sbjct: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDITRLYQVLKLRILEAISNGSSSTGDQEN 120

Query: 121 FDALYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGVGLHLLVIDSIGAYHWVD 180
           FDAL+ATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERD LGVGLHLLVIDSIGAYHWVD
Sbjct: 121 FDALHATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDGLGVGLHLLVIDSIGAYHWVD 180

Query: 181 RGSSSLPLWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDIVRR-- 240
           R SSSLPLWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFG+RSSDIVRR  
Sbjct: 181 RVSSSLPLWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGNRSSDIVRRKP 240

Query: 241 ----------------EKSLSESEPRHGKPDGGLVLYREYMPSAWQSFVTHRVFVRSSDE 300
                           E+SLSESE RHGK DGG VLYREYMPSAWQSFVTHRVFVR SDE
Sbjct: 241 LPSPFLPSRIKRMMLCEQSLSESESRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRDSDE 300

Query: 301 HLTASSCEHQPTYFSEWLLPSLGFLDKFIVKN 315
           H T SSC+ QPTYFSEWLLPSLGFLDKFIVKN
Sbjct: 301 HPTGSSCDRQPTYFSEWLLPSLGFLDKFIVKN 332

[Close]

BLAST of Clc11G01340 vs. NCBI nr
Match: XP_008456836.1 (PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Cucumis melo])

HSP 1 Score: 585.1 bits (1507), Expect = 3.7e-163
Identity = 290/314 (92.36%), Postives = 295/314 (93.95%), Query Frame = 0


Query: 1   MALSQWIDGDESALEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60
           M LSQWIDGDESA EML RVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDITRLSQVLKLRILEAISNGSSNTGDREN 120
           AVNCILPKEWNGI YGGL CS VFIDLDCRLDITRL QVLKLRILEAISNGS NTGD EN
Sbjct: 61  AVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVLKLRILEAISNGSLNTGDGEN 120

Query: 121 FDALYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGVGLHLLVIDSIGAYHWVD 180
           FDALYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERD LGVGLHLLVIDSIGAYHWVD
Sbjct: 121 FDALYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDGLGVGLHLLVIDSIGAYHWVD 180

Query: 181 RGSSSLPLWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDIVRREK 240
           R SSSLP WGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIAS+ATIFGDRSS++VRR+K
Sbjct: 181 RISSSLPPWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIASRATIFGDRSSNVVRRDK 240

Query: 241 SLSESEPRHGKPDGGLVLYREYMPSAWQSFVTHRVFVRSSDEHLTASSCEHQPTYFSEWL 300
           SLSESE RHGKPDGGL LYREYMPSAWQSFVTHRVFVR SDEHL  SSCEHQPTY SEWL
Sbjct: 241 SLSESELRHGKPDGGLGLYREYMPSAWQSFVTHRVFVRDSDEHLAFSSCEHQPTYSSEWL 300

Query: 301 LPSLGFLDKFIVKN 315
           LPSLGF+DKFIV N
Sbjct: 301 LPSLGFVDKFIVTN 314

[Close]

BLAST of Clc11G01340 vs. NCBI nr
Match: KAE8648111.1 (hypothetical protein Csa_004719 [Cucumis sativus])

HSP 1 Score: 582.4 bits (1500), Expect = 2.4e-162
Identity = 289/325 (88.92%), Postives = 298/325 (91.69%), Query Frame = 0


Query: 1   MALSQWIDGDESALEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60
           MAL QWIDGDESA EML RVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDITRLSQVLKLRILEAISNGSSNTGDREN 120
           AVNCILPKEW+GI YGGL C  VFIDLDCRLDITRL QVLKLRI+EA SNGS +TGD EN
Sbjct: 61  AVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVLKLRIVEATSNGSLSTGDGEN 120

Query: 121 FDALYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGVGLHLLVIDSIGAYHWVD 180
           FDALYATCLRRF YIRCYDSFEFLATLKTMHHKLQKERD LGVGLHLLVIDSIGAYHWVD
Sbjct: 121 FDALYATCLRRFSYIRCYDSFEFLATLKTMHHKLQKERDSLGVGLHLLVIDSIGAYHWVD 180

Query: 181 RGSSSLPLWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDIVRREK 240
           R SSSLPLWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSD V+R+K
Sbjct: 181 RISSSLPLWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDK 240

Query: 241 SLSESEPRHGKPDGGLVLYREYMPSAWQSFVTHRVFVRSSDEHLTASSCEHQPTYFSEWL 300
           +LSESE +HGKPDGGL LYREYMPSAWQSFVTHRVFVR+SDEHL  SSCEHQPTY SEWL
Sbjct: 241 TLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQPTYSSEWL 300

Query: 301 LPSLGFLDKFIVKNVRTKPFCLSYL 326
           LPSLGFLDKFIV NVR +   L  L
Sbjct: 301 LPSLGFLDKFIVTNVRNQAISLKLL 325

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BLAST of Clc11G01340 vs. ExPASy Swiss-Prot
Match: Q682D3 (DNA repair protein XRCC2 homolog OS=Arabidopsis thaliana OX=3702 GN=XRCC2 PE=2 SV=2)

HSP 1 Score: 309.7 bits (792), Expect = 3.9e-83
Identity = 164/338 (48.52%), Postives = 231/338 (68.34%), Query Frame = 0


Query: 6   WIDGDESALEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCI 65
           WI GDE+A +ML+RVLK+R  L++PPLHRVPLR GNVVE+ G S SAKTQILIQAA++CI
Sbjct: 9   WIRGDETAKQMLSRVLKDRAFLLIPPLHRVPLRAGNVVEITGASTSAKTQILIQAAISCI 68

Query: 66  LPKEWNGIRYGGLECSVVFIDLDCRLDITRLSQVLKLRILEA--ISNG------------ 125
           LPK WNGI YGGL   V+F+DLDCR D+ RLSQ+LK R+L+A  + NG            
Sbjct: 69  LPKTWNGIHYGGLGKLVLFLDLDCRFDVLRLSQMLKHRLLQANWLGNGAWWQLEESNVKS 128

Query: 126 --SSNTGDRENFD-ALYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGVGLHLL 185
             S+    +  FD  LYA+C++RF Y+RCYDS E L++LKT+H+++Q +++  G  + +L
Sbjct: 129 CKSAEEKTKTVFDEELYASCMKRFLYVRCYDSLELLSSLKTLHYRIQ-QQEACGSQVGVL 188

Query: 186 VIDSIGAYHWVDRGSSSLPLWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIF 245
           +IDSIGA+HW DR SSSL L  HNRK  SL NV+E  V+E++KLLLVH  +V+A+K TI+
Sbjct: 189 MIDSIGAFHWTDRLSSSLALETHNRKSLSLTNVVETIVQELKKLLLVHSLVVLATKGTIY 248

Query: 246 GDR-SSDIVRREKSLSESEPRHGKPDGGLVLYREYMPSAWQSFVTHRVFVRSSDEHLTAS 305
            ++  ++   R+ S ++    +         +RE+MPS+WQ+FVTH++ +R S ++ +  
Sbjct: 249 EEKYPANENNRKVSSNDHFSGNVASKAQQPPFREFMPSSWQAFVTHKIIIRKSADYQSLQ 308

Query: 306 SCEHQPTYFS-EWLLPSLGFLDKFIVKNVR----TKPF 321
           + +     +S EWL P L  +D+FIV +VR     KPF
Sbjct: 309 TGQQNLLAYSLEWLQPQLSRIDRFIVDDVRKLTTIKPF 345

[Close]

BLAST of Clc11G01340 vs. ExPASy Swiss-Prot
Match: O43543 (DNA repair protein XRCC2 OS=Homo sapiens OX=9606 GN=XRCC2 PE=1 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.6e-20
Identity = 85/279 (30.47%), Postives = 127/279 (45.52%), Query Frame = 0


Query: 11  ESALEMLARVLKERTSL--VVPPL---HRVPLRVGNVVELVGPSGSAKTQILIQAAVNCI 70
           ES  E+LAR L+ R+SL  + P L      P+  G+++E  GP G+ KT++L      CI
Sbjct: 9   ESGTELLAR-LEGRSSLKEIEPNLFADEDSPVH-GDILEFHGPEGTGKTEMLYHLTARCI 68

Query: 71  LPKEWNGIRYGGLECSVVFIDLDCRLDITRLSQVLKLRILEAISNGSSNTGDRENFDALY 130
           LPK       GGLE  V+FID D   D+ RL  +L+ R+              ++ + + 
Sbjct: 69  LPKS-----EGGLEVEVLFIDTDYHFDMLRLVTILEHRL-------------SQSSEEII 128

Query: 131 ATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGVGLHLLVIDSIGAYHWVDR--GS 190
             CL RFF + C  S   L TL ++              L LL++DS+ A++W+DR  G 
Sbjct: 129 KYCLGRFFLVYCSSSTHLLLTLYSLESMFCSH-----PSLCLLILDSLSAFYWIDRVNGG 188

Query: 191 SSLPLWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDIVRREKSLS 250
            S+ L     +    +  LE  V + R L+L   +  I  KA+   +  S   RR   + 
Sbjct: 189 ESVNLQESTLR--KCSQCLEKLVNDYR-LVLFATTQTIMQKASSSSEEPSHASRRLCDVD 246

Query: 251 ESEPRHGKPDGGLVLYREYMPSAWQSFVTHRVFVRSSDE 283
                        + YR Y+  AWQ  V HR+F    D+
Sbjct: 249 -------------IDYRPYLCKAWQQLVKHRMFFSKQDD 246

[Close]

BLAST of Clc11G01340 vs. ExPASy Swiss-Prot
Match: Q9CX47 (DNA repair protein XRCC2 OS=Mus musculus OX=10090 GN=Xrcc2 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 5.3e-19
Identity = 85/277 (30.69%), Postives = 122/277 (44.04%), Query Frame = 0


Query: 11  ESALEMLARVLKERTSL--VVPPL---HRVPLRVGNVVELVGPSGSAKTQILIQAAVNCI 70
           ES  E+LAR L+ R+SL  + P L      P+  G++ E  GP G+ KT++L      CI
Sbjct: 9   ESGTELLAR-LEGRSSLKELEPNLFADEDSPVH-GDIFEFHGPEGTGKTEMLYHLTARCI 68

Query: 71  LPKEWNGIRYGGLECSVVFIDLDCRLDITRLSQVLKLRILEAISNGSSNTGDRENFDALY 130
           LPK       GGL+  V+FID D   D+ RL  VL+ R+              ++ +   
Sbjct: 69  LPKS-----EGGLQIEVLFIDTDYHFDMLRLVTVLEHRL-------------SQSSEEAM 128

Query: 131 ATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGVGLHLLVIDSIGAYHWVDRGSSS 190
             CL R F   C  S + L TL ++   L          L LL++DS+ +++W+DR S  
Sbjct: 129 KLCLARLFLAYCSSSMQLLLTLHSLEALLCSR-----PSLCLLIVDSLSSFYWIDRVSGG 188

Query: 191 LPLWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSES 250
             +          + +LE  V E R LL      ++       G  S+D          S
Sbjct: 189 ESVALQESTLQKCSQLLERLVTEYRLLLFATTQSLMQK-----GSDSAD--------GPS 245

Query: 251 EPRHGKPDGGLVLYREYMPSAWQSFVTHRVFVRSSDE 283
             +H  P  G + YR Y+  AWQ  V HRV     DE
Sbjct: 249 SSKH--PCDGDMGYRAYLCKAWQRVVKHRVIFSRDDE 245

[Close]

BLAST of Clc11G01340 vs. ExPASy Swiss-Prot
Match: Q9HJ68 (DNA repair and recombination protein RadA OS=Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) OX=273075 GN=radA PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 7.4e-05
Identity = 45/149 (30.20%), Postives = 65/149 (43.62%), Query Frame = 0


Query: 42  VVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDITRLSQVLK 101
           + E  G  GS KTQI+ Q AVNC LPKE      GG +  V+ ID +      R+ Q+ K
Sbjct: 110 ITEFFGEFGSGKTQIMHQLAVNCTLPKE-----KGGFDSDVMMIDTENTFRPERIIQMAK 169

Query: 102 LRILEAISNGSSNTGDRENFDALYATCLRRFFYIRCYDSFEFLATLKTMHHKL---QKER 161
                      S   D +         L+R    R Y+S          HH++   +K +
Sbjct: 170 -----------SKGADPDE-------TLKRIHVARAYNS----------HHQILLAEKAQ 225

Query: 162 DDL-GVGLHLLVIDSIGAY---HWVDRGS 184
           D      + LL++DS+ A+    +V RGS
Sbjct: 230 DTAKEYNIKLLIVDSLTAHFRSEYVGRGS 225

[Close]

BLAST of Clc11G01340 vs. ExPASy Swiss-Prot
Match: Q97BJ9 (DNA repair and recombination protein RadA OS=Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) OX=273116 GN=radA PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.6e-04
Identity = 41/145 (28.28%), Postives = 63/145 (43.45%), Query Frame = 0


Query: 42  VVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDITRLSQVLK 101
           + E  G  GS KTQI+ Q AVNC +PKE      GG +  V+ ID +      R+ Q+ K
Sbjct: 110 ITEFFGEFGSGKTQIMHQLAVNCTMPKE-----KGGFDSDVMMIDTENTFRPERIIQMAK 169

Query: 102 LRILEAISNGSSNTGDRENFDALYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDL 161
            + L+                      L+R    R Y+S   +     +  K Q+   + 
Sbjct: 170 SKGLDPDET------------------LKRIHVARAYNSHHQI----LLAEKAQETAKEF 225

Query: 162 GVGLHLLVIDSIGAY---HWVDRGS 184
            +   LL++DS+ A+    +V RGS
Sbjct: 230 NI--RLLIVDSLTAHFRSEYVGRGS 225

[Close]

BLAST of Clc11G01340 vs. ExPASy TrEMBL
Match: A0A1S3C3R7 (DNA repair protein XRCC2 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496670 PE=4 SV=1)

HSP 1 Score: 590.9 bits (1522), Expect = 3.3e-165
Identity = 294/325 (90.46%), Postives = 300/325 (92.31%), Query Frame = 0


Query: 1   MALSQWIDGDESALEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60
           M LSQWIDGDESA EML RVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDITRLSQVLKLRILEAISNGSSNTGDREN 120
           AVNCILPKEWNGI YGGL CS VFIDLDCRLDITRL QVLKLRILEAISNGS NTGD EN
Sbjct: 61  AVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVLKLRILEAISNGSLNTGDGEN 120

Query: 121 FDALYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGVGLHLLVIDSIGAYHWVD 180
           FDALYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERD LGVGLHLLVIDSIGAYHWVD
Sbjct: 121 FDALYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDGLGVGLHLLVIDSIGAYHWVD 180

Query: 181 RGSSSLPLWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDIVRREK 240
           R SSSLP WGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIAS+ATIFGDRSS++VRR+K
Sbjct: 181 RISSSLPPWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIASRATIFGDRSSNVVRRDK 240

Query: 241 SLSESEPRHGKPDGGLVLYREYMPSAWQSFVTHRVFVRSSDEHLTASSCEHQPTYFSEWL 300
           SLSESE RHGKPDGGL LYREYMPSAWQSFVTHRVFVR SDEHL  SSCEHQPTY SEWL
Sbjct: 241 SLSESELRHGKPDGGLGLYREYMPSAWQSFVTHRVFVRDSDEHLAFSSCEHQPTYSSEWL 300

Query: 301 LPSLGFLDKFIVKNVRTKPFCLSYL 326
           LPSLGF+DKFIV NVR +   L  L
Sbjct: 301 LPSLGFVDKFIVTNVRNQAIFLKLL 325

[Close]

BLAST of Clc11G01340 vs. ExPASy TrEMBL
Match: A0A1S3C491 (DNA repair protein XRCC2 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496670 PE=4 SV=1)

HSP 1 Score: 585.1 bits (1507), Expect = 1.8e-163
Identity = 290/314 (92.36%), Postives = 295/314 (93.95%), Query Frame = 0


Query: 1   MALSQWIDGDESALEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60
           M LSQWIDGDESA EML RVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDITRLSQVLKLRILEAISNGSSNTGDREN 120
           AVNCILPKEWNGI YGGL CS VFIDLDCRLDITRL QVLKLRILEAISNGS NTGD EN
Sbjct: 61  AVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVLKLRILEAISNGSLNTGDGEN 120

Query: 121 FDALYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGVGLHLLVIDSIGAYHWVD 180
           FDALYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERD LGVGLHLLVIDSIGAYHWVD
Sbjct: 121 FDALYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDGLGVGLHLLVIDSIGAYHWVD 180

Query: 181 RGSSSLPLWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDIVRREK 240
           R SSSLP WGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIAS+ATIFGDRSS++VRR+K
Sbjct: 181 RISSSLPPWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIASRATIFGDRSSNVVRRDK 240

Query: 241 SLSESEPRHGKPDGGLVLYREYMPSAWQSFVTHRVFVRSSDEHLTASSCEHQPTYFSEWL 300
           SLSESE RHGKPDGGL LYREYMPSAWQSFVTHRVFVR SDEHL  SSCEHQPTY SEWL
Sbjct: 241 SLSESELRHGKPDGGLGLYREYMPSAWQSFVTHRVFVRDSDEHLAFSSCEHQPTYSSEWL 300

Query: 301 LPSLGFLDKFIVKN 315
           LPSLGF+DKFIV N
Sbjct: 301 LPSLGFVDKFIVTN 314

[Close]

BLAST of Clc11G01340 vs. ExPASy TrEMBL
Match: A0A0A0KMH0 (RECA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G289900 PE=4 SV=1)

HSP 1 Score: 576.2 bits (1484), Expect = 8.3e-161
Identity = 285/314 (90.76%), Postives = 293/314 (93.31%), Query Frame = 0


Query: 1   MALSQWIDGDESALEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60
           MAL QWIDGDESA EML RVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDITRLSQVLKLRILEAISNGSSNTGDREN 120
           AVNCILPKEW+GI YGGL C  VFIDLDCRLDITRL QVLKLRI+EA SNGS +TGD EN
Sbjct: 61  AVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVLKLRIVEATSNGSLSTGDGEN 120

Query: 121 FDALYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGVGLHLLVIDSIGAYHWVD 180
           FDALYATCLRRF YIRCYDSFEFLATLKTMHHKLQKERD LGVGLHLLVIDSIGAYHWVD
Sbjct: 121 FDALYATCLRRFSYIRCYDSFEFLATLKTMHHKLQKERDSLGVGLHLLVIDSIGAYHWVD 180

Query: 181 RGSSSLPLWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDIVRREK 240
           R SSSLPLWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSD V+R+K
Sbjct: 181 RISSSLPLWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDK 240

Query: 241 SLSESEPRHGKPDGGLVLYREYMPSAWQSFVTHRVFVRSSDEHLTASSCEHQPTYFSEWL 300
           +LSESE +HGKPDGGL LYREYMPSAWQSFVTHRVFVR+SDEHL  SSCEHQPTY SEWL
Sbjct: 241 TLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQPTYSSEWL 300

Query: 301 LPSLGFLDKFIVKN 315
           LPSLGFLDKFIV N
Sbjct: 301 LPSLGFLDKFIVTN 314

[Close]

BLAST of Clc11G01340 vs. ExPASy TrEMBL
Match: A0A6J1KC54 (DNA repair protein XRCC2 homolog isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111492982 PE=4 SV=1)

HSP 1 Score: 559.3 bits (1440), Expect = 1.1e-155
Identity = 278/314 (88.54%), Postives = 288/314 (91.72%), Query Frame = 0


Query: 1   MALSQWIDGDESALEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60
           MAL QWIDGDESA EML RVLKERTSL+VPPLHRVPL VGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MALRQWIDGDESAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDITRLSQVLKLRILEAISNGSSNTGDREN 120
           AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDI+RLSQVLKLRILE   N     GD  N
Sbjct: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEGNGN-----GDWGN 120

Query: 121 FDALYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGVGLHLLVIDSIGAYHWVD 180
           FDALY TCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLG+GL LL+IDSIGAYHWVD
Sbjct: 121 FDALYTTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIGLRLLMIDSIGAYHWVD 180

Query: 181 RGSSSLPLWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDIVRREK 240
           R SSSLPLWG+NRKGFSLAN+LEAAVEE++KLLLVHPSIVIASKATIFGDRSSDIVRREK
Sbjct: 181 RVSSSLPLWGYNRKGFSLANMLEAAVEEIKKLLLVHPSIVIASKATIFGDRSSDIVRREK 240

Query: 241 SLSESEPRHGKPDGGLVLYREYMPSAWQSFVTHRVFVRSSDEHLTASSCEHQPTYFSEWL 300
           S SE+E RHGK DGG VLYREYMPSAWQSFVTHRVFVR SDE+LT SSCEHQ  YFSEWL
Sbjct: 241 SSSETESRHGKSDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQSIYFSEWL 300

Query: 301 LPSLGFLDKFIVKN 315
           LPSLG LDKFIVKN
Sbjct: 301 LPSLGVLDKFIVKN 309

[Close]

BLAST of Clc11G01340 vs. ExPASy TrEMBL
Match: A0A6J1GZX5 (DNA repair protein XRCC2 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111458674 PE=4 SV=1)

HSP 1 Score: 559.3 bits (1440), Expect = 1.1e-155
Identity = 280/314 (89.17%), Postives = 290/314 (92.36%), Query Frame = 0


Query: 1   MALSQWIDGDESALEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60
           MAL QWIDGDE+A EML RV KERTSL+VPPLHRVPL VGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MALRQWIDGDETAAEMLTRVHKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDITRLSQVLKLRILEAISNGSSNTGDREN 120
           AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDI+RLSQVLKLRILE   NGS   GD  N
Sbjct: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILE--GNGS---GDWGN 120

Query: 121 FDALYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGVGLHLLVIDSIGAYHWVD 180
           FDALY TCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLG+ LHLL+IDSIGAYHWVD
Sbjct: 121 FDALYTTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMIDSIGAYHWVD 180

Query: 181 RGSSSLPLWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDIVRREK 240
           R SSSLPLWG+NRKGFSLAN+LEAAVEEV+KLLLVHPSIVIASKATIFGDRSSDIVRREK
Sbjct: 181 RVSSSLPLWGYNRKGFSLANMLEAAVEEVKKLLLVHPSIVIASKATIFGDRSSDIVRREK 240

Query: 241 SLSESEPRHGKPDGGLVLYREYMPSAWQSFVTHRVFVRSSDEHLTASSCEHQPTYFSEWL 300
           SLSE+E RHGK DGG VLYREYMPSAWQSFVTHRVFVR SDE+LT SSCEHQ  YFSEWL
Sbjct: 241 SLSETESRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQSIYFSEWL 300

Query: 301 LPSLGFLDKFIVKN 315
           LPSLG LDKFIVKN
Sbjct: 301 LPSLGVLDKFIVKN 309

[Close]

BLAST of Clc11G01340 vs. TAIR 10
Match: AT5G64520.1 (homolog of X-ray repair cross complementing 2 (XRCC2) )

HSP 1 Score: 309.7 bits (792), Expect = 2.8e-84
Identity = 164/338 (48.52%), Postives = 231/338 (68.34%), Query Frame = 0


Query: 6   WIDGDESALEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCI 65
           WI GDE+A +ML+RVLK+R  L++PPLHRVPLR GNVVE+ G S SAKTQILIQAA++CI
Sbjct: 9   WIRGDETAKQMLSRVLKDRAFLLIPPLHRVPLRAGNVVEITGASTSAKTQILIQAAISCI 68

Query: 66  LPKEWNGIRYGGLECSVVFIDLDCRLDITRLSQVLKLRILEA--ISNG------------ 125
           LPK WNGI YGGL   V+F+DLDCR D+ RLSQ+LK R+L+A  + NG            
Sbjct: 69  LPKTWNGIHYGGLGKLVLFLDLDCRFDVLRLSQMLKHRLLQANWLGNGAWWQLEESNVKS 128

Query: 126 --SSNTGDRENFD-ALYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGVGLHLL 185
             S+    +  FD  LYA+C++RF Y+RCYDS E L++LKT+H+++Q +++  G  + +L
Sbjct: 129 CKSAEEKTKTVFDEELYASCMKRFLYVRCYDSLELLSSLKTLHYRIQ-QQEACGSQVGVL 188

Query: 186 VIDSIGAYHWVDRGSSSLPLWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIF 245
           +IDSIGA+HW DR SSSL L  HNRK  SL NV+E  V+E++KLLLVH  +V+A+K TI+
Sbjct: 189 MIDSIGAFHWTDRLSSSLALETHNRKSLSLTNVVETIVQELKKLLLVHSLVVLATKGTIY 248

Query: 246 GDR-SSDIVRREKSLSESEPRHGKPDGGLVLYREYMPSAWQSFVTHRVFVRSSDEHLTAS 305
            ++  ++   R+ S ++    +         +RE+MPS+WQ+FVTH++ +R S ++ +  
Sbjct: 249 EEKYPANENNRKVSSNDHFSGNVASKAQQPPFREFMPSSWQAFVTHKIIIRKSADYQSLQ 308

Query: 306 SCEHQPTYFS-EWLLPSLGFLDKFIVKNVR----TKPF 321
           + +     +S EWL P L  +D+FIV +VR     KPF
Sbjct: 309 TGQQNLLAYSLEWLQPQLSRIDRFIVDDVRKLTTIKPF 345

[Close]

BLAST of Clc11G01340 vs. TAIR 10
Match: AT5G64520.2 (homolog of X-ray repair cross complementing 2 (XRCC2) )

HSP 1 Score: 306.2 bits (783), Expect = 3.1e-83
Identity = 160/329 (48.63%), Postives = 227/329 (69.00%), Query Frame = 0


Query: 6   WIDGDESALEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCI 65
           WI GDE+A +ML+RVLK+R  L++PPLHRVPLR GNVVE+ G S SAKTQILIQAA++CI
Sbjct: 9   WIRGDETAKQMLSRVLKDRAFLLIPPLHRVPLRAGNVVEITGASTSAKTQILIQAAISCI 68

Query: 66  LPKEWNGIRYGGLECSVVFIDLDCRLDITRLSQVLKLRILEA--ISNG------------ 125
           LPK WNGI YGGL   V+F+DLDCR D+ RLSQ+LK R+L+A  + NG            
Sbjct: 69  LPKTWNGIHYGGLGKLVLFLDLDCRFDVLRLSQMLKHRLLQANWLGNGAWWQLEESNVKS 128

Query: 126 --SSNTGDRENFD-ALYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGVGLHLL 185
             S+    +  FD  LYA+C++RF Y+RCYDS E L++LKT+H+++Q +++  G  + +L
Sbjct: 129 CKSAEEKTKTVFDEELYASCMKRFLYVRCYDSLELLSSLKTLHYRIQ-QQEACGSQVGVL 188

Query: 186 VIDSIGAYHWVDRGSSSLPLWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIF 245
           +IDSIGA+HW DR SSSL L  HNRK  SL NV+E  V+E++KLLLVH  +V+A+K TI+
Sbjct: 189 MIDSIGAFHWTDRLSSSLALETHNRKSLSLTNVVETIVQELKKLLLVHSLVVLATKGTIY 248

Query: 246 GDR-SSDIVRREKSLSESEPRHGKPDGGLVLYREYMPSAWQSFVTHRVFVRSSDEHLTAS 305
            ++  ++   R+ S ++    +         +RE+MPS+WQ+FVTH++ +R S ++ +  
Sbjct: 249 EEKYPANENNRKVSSNDHFSGNVASKAQQPPFREFMPSSWQAFVTHKIIIRKSADYQSLQ 308

Query: 306 SCEHQPTYFS-EWLLPSLGFLDKFIVKNV 316
           + +     +S EWL P L  +D+FIV +V
Sbjct: 309 TGQQNLLAYSLEWLQPQLSRIDRFIVDDV 336

[Close]

BLAST of Clc11G01340 vs. TAIR 10
Match: AT5G64520.3 (homolog of X-ray repair cross complementing 2 (XRCC2) )

HSP 1 Score: 258.1 bits (658), Expect = 9.7e-69
Identity = 134/249 (53.82%), Postives = 179/249 (71.89%), Query Frame = 0


Query: 6   WIDGDESALEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCI 65
           WI GDE+A +ML+RVLK+R  L++PPLHRVPLR GNVVE+ G S SAKTQILIQAA++CI
Sbjct: 9   WIRGDETAKQMLSRVLKDRAFLLIPPLHRVPLRAGNVVEITGASTSAKTQILIQAAISCI 68

Query: 66  LPKEWNGIRYGGLECSVVFIDLDCRLDITRLSQVLKLRILEA--ISNG------------ 125
           LPK WNGI YGGL   V+F+DLDCR D+ RLSQ+LK R+L+A  + NG            
Sbjct: 69  LPKTWNGIHYGGLGKLVLFLDLDCRFDVLRLSQMLKHRLLQANWLGNGAWWQLEESNVKS 128

Query: 126 --SSNTGDRENFD-ALYATCLRRFFYIRCYDSFEFLATLK------TMHHKLQKERDDLG 185
             S+    +  FD  LYA+C++RF Y+RCYDS E L++LK      T+H+++Q +++  G
Sbjct: 129 CKSAEEKTKTVFDEELYASCMKRFLYVRCYDSLELLSSLKYFTVLQTLHYRIQ-QQEACG 188

Query: 186 VGLHLLVIDSIGAYHWVDRGSSSLPLWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIA 232
             + +L+IDSIGA+HW DR SSSL L  HNRK  SL NV+E  V+E++KLLLVH  +V+A
Sbjct: 189 SQVGVLMIDSIGAFHWTDRLSSSLALETHNRKSLSLTNVVETIVQELKKLLLVHSLVVLA 248

The following BLAST results are available for this feature:

BLAST of Clc11G01340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891841.1	2.5e-167	94.59	DNA repair protein XRCC2 homolog isoform X2 [Benincasa hispida]	[more]
XP_008456835.1	6.8e-165	90.46	PREDICTED: DNA repair protein XRCC2 homolog isoform X1 [Cucumis melo]	[more]
XP_038891840.1	5.7e-164	89.46	DNA repair protein XRCC2 homolog isoform X1 [Benincasa hispida]	[more]
XP_008456836.1	3.7e-163	92.36	PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Cucumis melo]	[more]
KAE8648111.1	2.4e-162	88.92	hypothetical protein Csa_004719 [Cucumis sativus]	[more]

BLAST of Clc11G01340 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q682D3	3.9e-83	48.52	DNA repair protein XRCC2 homolog OS=Arabidopsis thaliana OX=3702 GN=XRCC2 PE=2 S...	[more]
O43543	3.6e-20	30.47	DNA repair protein XRCC2 OS=Homo sapiens OX=9606 GN=XRCC2 PE=1 SV=1	[more]
Q9CX47	5.3e-19	30.69	DNA repair protein XRCC2 OS=Mus musculus OX=10090 GN=Xrcc2 PE=2 SV=1	[more]
Q9HJ68	7.4e-05	30.20	DNA repair and recombination protein RadA OS=Thermoplasma acidophilum (strain AT...	[more]
Q97BJ9	1.6e-04	28.28	DNA repair and recombination protein RadA OS=Thermoplasma volcanium (strain ATCC...	[more]

BLAST of Clc11G01340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C3R7	3.3e-165	90.46	DNA repair protein XRCC2 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496...	[more]
A0A1S3C491	1.8e-163	92.36	DNA repair protein XRCC2 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496...	[more]
A0A0A0KMH0	8.3e-161	90.76	RECA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G289900 PE=4...	[more]
A0A6J1KC54	1.1e-155	88.54	DNA repair protein XRCC2 homolog isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1GZX5	1.1e-155	89.17	DNA repair protein XRCC2 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]

BLAST of Clc11G01340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G64520.1	2.8e-84	48.52	homolog of X-ray repair cross complementing 2 (XRCC2)	[more]
AT5G64520.2	3.1e-83	48.63	homolog of X-ray repair cross complementing 2 (XRCC2)	[more]
AT5G64520.3	9.7e-69	53.82	homolog of X-ray repair cross complementing 2 (XRCC2)	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 29..297 e-value: 9.8E-29 score: 102.7
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 37..181
IPR013632	DNA recombination and repair protein Rad51-like, C-terminal	PFAM	PF08423	Rad51	coord: 38..180 e-value: 2.9E-7 score: 30.0
IPR030547	DNA repair protein XRCC2	PANTHER	PTHR46644	DNA REPAIR PROTEIN XRCC2	coord: 4..316
IPR020588	DNA recombination and repair protein RecA-like, ATP-binding domain	PROSITE	PS50162	RECA_2	coord: 17..227 score: 18.880798

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G01340.2	Clc11G01340.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
biological_process	GO:0000724	double-strand break repair via homologous recombination
cellular_component	GO:0033063	Rad51B-Rad51C-Rad51D-XRCC2 complex
cellular_component	GO:0005657	replication fork
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008094	ATP-dependent activity, acting on DNA
molecular_function	GO:0003677	DNA binding