Clc11G01230 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G01230
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	PHD finger protein MALE STERILITY 1
Location	ClcChr11: 1314316 .. 1314609 (+)
RNA-Seq Expression	Clc11G01230
Synteny	Clc11G01230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGAGGCAATCGGGAAGAAGAGGAGGAGGGTCGGTGGCGGTGGCGGAGAGAGGGTGTTTAGATTCAACAACTTTGGGGAGAATGGTCATCCGGCAGAGCTTGTGGGGCAGTTCCGGGAGAATGTGGAGGCGCTACTAGAGTTCGGGCGGTGGGAGAGTGGAGAGTGTGGCGGGGGGGTTCCAGTGTTGGTCGTTTCGTCTGCAGGTTCAGCGACAACCGCCTTTCCACGTCGTGCTGTTTGTGGTGGAGGAGGCGGTGGAGGCAGCCACGGTGGCGGCGAGGGAGTGTAA

mRNA sequence

ATGATGGAGGCAATCGGGAAGAAGAGGAGGAGGGTCGGTGGCGGTGGCGGAGAGAGGGTGTTTAGATTCAACAACTTTGGGGAGAATGGTCATCCGGCAGAGCTTGTGGGGCAGTTCCGGGAGAATGTGGAGGCGCTACTAGAGTTCGGGCGGTGGGAGAGTGGAGAGTGTGGCGGGGGGGTTCCAGTGTTGGTCGTTTCGTCTGCAGGTTCAGCGACAACCGCCTTTCCACGTCGTGCTGTTTGTGGTGGAGGAGGCGGTGGAGGCAGCCACGGTGGCGGCGAGGGAGTGTAA

Coding sequence (CDS)

ATGATGGAGGCAATCGGGAAGAAGAGGAGGAGGGTCGGTGGCGGTGGCGGAGAGAGGGTGTTTAGATTCAACAACTTTGGGGAGAATGGTCATCCGGCAGAGCTTGTGGGGCAGTTCCGGGAGAATGTGGAGGCGCTACTAGAGTTCGGGCGGTGGGAGAGTGGAGAGTGTGGCGGGGGGGTTCCAGTGTTGGTCGTTTCGTCTGCAGGTTCAGCGACAACCGCCTTTCCACGTCGTGCTGTTTGTGGTGGAGGAGGCGGTGGAGGCAGCCACGGTGGCGGCGAGGGAGTGTAA

Protein sequence

MMEAIGKKRRRVGGGGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGECGGGVPVLVVSSAGSATTAFPRRAVCGGGGGGGSHGGGEGV

Homology

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BLAST of Clc11G01230 vs. NCBI nr
Match: XP_038891568.1 (PHD finger protein MALE STERILITY 1 [Benincasa hispida])

HSP 1 Score: 100.9 bits (250), Expect = 6.3e-18
Identity = 49/59 (83.05%), Postives = 50/59 (84.75%), Query Frame = 0


Query: 1  MMEAIGKKRRRVGGGGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGECGG 60
          M E  GKKRRR GGGGGERVFRF +FGENGHPAELVG FRENVEALL FGR E GECGG
Sbjct: 1  MTEVNGKKRRRGGGGGGERVFRFKSFGENGHPAELVGLFRENVEALLGFGRCEGGECGG 59

[Close]

BLAST of Clc11G01230 vs. NCBI nr
Match: XP_022156066.1 (PHD finger protein MALE STERILITY 1 [Momordica charantia])

HSP 1 Score: 99.0 bits (245), Expect = 2.4e-17
Identity = 45/61 (73.77%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 1  MMEAIGKKRRRVGGGGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGECGGG 60
          M EAIG+KRRR  GGGGE+VFRF +FGENG+P E VG+FRENV ALL FGRWESG+C GG
Sbjct: 1  MAEAIGRKRRRGAGGGGEKVFRFKSFGENGYPVEFVGRFRENVVALLGFGRWESGDCAGG 60

Query: 61 V 62
          +
Sbjct: 61 L 61

[Close]

BLAST of Clc11G01230 vs. NCBI nr
Match: XP_004140423.1 (PHD finger protein MALE STERILITY 1 [Cucumis sativus] >KAE8648106.1 hypothetical protein Csa_004730 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 2.4e-17
Identity = 47/55 (85.45%), Postives = 51/55 (92.73%), Query Frame = 0


Query: 3  EAIGKKRRRVGGGGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGEC 58
          + IGKKRRR GGGGGERVFRF +FGENGHPAELVG+FRENVEALL FG+WESGEC
Sbjct: 5  DVIGKKRRR-GGGGGERVFRFKSFGENGHPAELVGRFRENVEALLGFGKWESGEC 58

[Close]

BLAST of Clc11G01230 vs. NCBI nr
Match: XP_008456986.1 (PREDICTED: PHD finger protein MALE STERILITY 1 [Cucumis melo])

HSP 1 Score: 98.2 bits (243), Expect = 4.1e-17
Identity = 47/57 (82.46%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 3  EAIGKKRRRVGGGGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGECGG 60
          + IGKKRRR GGGGGERVF F +FGENGHPAELVG+FRENVEALL FG+WESGEC G
Sbjct: 4  DVIGKKRRR-GGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSG 59

[Close]

BLAST of Clc11G01230 vs. NCBI nr
Match: KAA0032172.1 (PHD finger protein MALE STERILITY 1 [Cucumis melo var. makuwa] >TYK14417.1 PHD finger protein MALE STERILITY 1 [Cucumis melo var. makuwa])

HSP 1 Score: 98.2 bits (243), Expect = 4.1e-17
Identity = 47/57 (82.46%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 3  EAIGKKRRRVGGGGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGECGG 60
          + IGKKRRR GGGGGERVF F +FGENGHPAELVG+FRENVEALL FG+WESGEC G
Sbjct: 4  DVIGKKRRR-GGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSG 59

[Close]

BLAST of Clc11G01230 vs. ExPASy Swiss-Prot
Match: Q9FMS5 (PHD finger protein MALE STERILITY 1 OS=Arabidopsis thaliana OX=3702 GN=MS1 PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.7e-05
Identity = 28/51 (54.90%), Postives = 34/51 (66.67%), Query Frame = 0


Query: 5  IGKKRRRVGGGGGERVFRFNNFGENGHPAELVG-QFRENVEALLEFGRWES 55
          I KKR+R    G  RVFR   FGE+GHPAE+    FR+N+  LLEFG +ES
Sbjct: 13 IPKKRKR----GESRVFRLKTFGESGHPAEMNELSFRDNLAKLLEFGHFES 59

[Close]

BLAST of Clc11G01230 vs. ExPASy TrEMBL
Match: A0A0A0KPP3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G291670 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.2e-17
Identity = 47/55 (85.45%), Postives = 51/55 (92.73%), Query Frame = 0


Query: 3  EAIGKKRRRVGGGGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGEC 58
          + IGKKRRR GGGGGERVFRF +FGENGHPAELVG+FRENVEALL FG+WESGEC
Sbjct: 4  DVIGKKRRR-GGGGGERVFRFKSFGENGHPAELVGRFRENVEALLGFGKWESGEC 57

[Close]

BLAST of Clc11G01230 vs. ExPASy TrEMBL
Match: A0A6J1DTQ4 (PHD finger protein MALE STERILITY 1 OS=Momordica charantia OX=3673 GN=LOC111023034 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.2e-17
Identity = 45/61 (73.77%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 1  MMEAIGKKRRRVGGGGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGECGGG 60
          M EAIG+KRRR  GGGGE+VFRF +FGENG+P E VG+FRENV ALL FGRWESG+C GG
Sbjct: 1  MAEAIGRKRRRGAGGGGEKVFRFKSFGENGYPVEFVGRFRENVVALLGFGRWESGDCAGG 60

Query: 61 V 62
          +
Sbjct: 61 L 61

[Close]

BLAST of Clc11G01230 vs. ExPASy TrEMBL
Match: A0A5D3CR48 (PHD finger protein MALE STERILITY 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold186G00700 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.0e-17
Identity = 47/57 (82.46%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 3  EAIGKKRRRVGGGGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGECGG 60
          + IGKKRRR GGGGGERVF F +FGENGHPAELVG+FRENVEALL FG+WESGEC G
Sbjct: 4  DVIGKKRRR-GGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSG 59

[Close]

BLAST of Clc11G01230 vs. ExPASy TrEMBL
Match: A0A1S3C4G3 (PHD finger protein MALE STERILITY 1 OS=Cucumis melo OX=3656 GN=LOC103496772 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.0e-17
Identity = 47/57 (82.46%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 3  EAIGKKRRRVGGGGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGECGG 60
          + IGKKRRR GGGGGERVF F +FGENGHPAELVG+FRENVEALL FG+WESGEC G
Sbjct: 4  DVIGKKRRR-GGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSG 59

[Close]

BLAST of Clc11G01230 vs. ExPASy TrEMBL
Match: A0A7J6E6G7 (PHD-type domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_011119 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.2e-09
Identity = 37/56 (66.07%), Postives = 41/56 (73.21%), Query Frame = 0


Query: 7  KKRRRVGGGGGERVFRFNNFGENGHPAELVGQFRENVEALLEFGRWESGECGGGVP 63
          KKR+R     GERVFRF NFGENG+P E VG FRENV+ALLEFG  ES  C  G+P
Sbjct: 30 KKRKR-----GERVFRFKNFGENGYPVEFVGCFRENVKALLEFGHLESNLCTTGMP 80

[Close]

BLAST of Clc11G01230 vs. TAIR 10
Match: AT5G22260.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 50.1 bits (118), Expect = 1.2e-06
Identity = 28/51 (54.90%), Postives = 34/51 (66.67%), Query Frame = 0


Query: 5  IGKKRRRVGGGGGERVFRFNNFGENGHPAELVG-QFRENVEALLEFGRWES 55
          I KKR+R    G  RVFR   FGE+GHPAE+    FR+N+  LLEFG +ES
Sbjct: 13 IPKKRKR----GESRVFRLKTFGESGHPAEMNELSFRDNLAKLLEFGHFES 59

The following BLAST results are available for this feature:

BLAST of Clc11G01230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891568.1	6.3e-18	83.05	PHD finger protein MALE STERILITY 1 [Benincasa hispida]	[more]
XP_022156066.1	2.4e-17	73.77	PHD finger protein MALE STERILITY 1 [Momordica charantia]	[more]
XP_004140423.1	2.4e-17	85.45	PHD finger protein MALE STERILITY 1 [Cucumis sativus] >KAE8648106.1 hypothetical...	[more]
XP_008456986.1	4.1e-17	82.46	PREDICTED: PHD finger protein MALE STERILITY 1 [Cucumis melo]	[more]
KAA0032172.1	4.1e-17	82.46	PHD finger protein MALE STERILITY 1 [Cucumis melo var. makuwa] >TYK14417.1 PHD f...	[more]

BLAST of Clc11G01230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMS5	1.7e-05	54.90	PHD finger protein MALE STERILITY 1 OS=Arabidopsis thaliana OX=3702 GN=MS1 PE=1 ...	[more]

BLAST of Clc11G01230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPP3	1.2e-17	85.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G291670 PE=4 SV=1	[more]
A0A6J1DTQ4	1.2e-17	73.77	PHD finger protein MALE STERILITY 1 OS=Momordica charantia OX=3673 GN=LOC1110230...	[more]
A0A5D3CR48	2.0e-17	82.46	PHD finger protein MALE STERILITY 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S3C4G3	2.0e-17	82.46	PHD finger protein MALE STERILITY 1 OS=Cucumis melo OX=3656 GN=LOC103496772 PE=4...	[more]
A0A7J6E6G7	1.2e-09	66.07	PHD-type domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_011119 PE...	[more]

BLAST of Clc11G01230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G22260.1	1.2e-06	54.90	RING/FYVE/PHD zinc finger superfamily protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G01230.1	Clc11G01230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048655	anther wall tapetum morphogenesis
biological_process	GO:0071367	cellular response to brassinosteroid stimulus
biological_process	GO:0055046	microgametogenesis
biological_process	GO:0009846	pollen germination
biological_process	GO:0010208	pollen wall assembly
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0016020	membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046872	metal ion binding