Clc11G00110 (gene) Watermelon (cordophanus) v2

Overview
NameClc11G00110
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr11: 128481 .. 131205 (+)
RNA-Seq ExpressionClc11G00110
SyntenyClc11G00110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGGAGGAAGCATCCGATGCTCACCAATCAGTTCCGTCACGCCACCCCTGGCCTCGGCATCGCCCTCGTCGCTTTCGGCATCTACCTTGTCGGCGAGCAAGTCTACAACAGGATCAATTCTCCCTCTTCTTCTCACCACCACCATGCCGATGCATCGTCCGCCACCCATTAACTGCTACCGGTGATTTCCCCAACTCTTCACTCCCATTTCCATTCCATTACTTTCTTCCCCTCGCCGTCAGATGGATTTTTTTTTTCGTGTTTGAATCATACATATTGATTTCCCTCTGTTTGTGTGTTTTTATTGAAAATTTCTTCACACTGTCATCTGAAGAGAACGAAGGTGTTCTTCTTTTCCTTCATCTTTCTAGGTCAAGTCTGCCCATTATATCGCGTGATTCTGTAGAAATTTGTGCGTCTTCATAAATTGCGGTGCGATTATTATTATTATTTTTTTAAAGTATTGTTTCGAGCATTTTATCTTATATATGATCTTTCGAAGCTTTAGATCCGTCTTTCATATTTACATCTAAATTAATGGAGAAACCCAAAAATTTTCCTGCTGACGATGATATTGCATTTGTTGGAACTTTAGCCTGATTAACTTTAATTATCATGTTGGTGTTTCCTGGAGTGTAAGTCTCTAACTTCTTAGGGACCGTTATGGCAAGAAAGCAAATTTGTATTAAGTGTTGGTTGCTAGGGAGCCATCGAGGACCATAGGCAAAGAAAAAAGGCGTTGTTTTTAGATTGACTTTGAAAAGCTTATGACCATGTGGACTGGTACTTCTTGGATAAAGTCATAGAGAAGAAGGGATTTGGGTGTAAGTGGAGGCTTAGATATGAAATTGTATTAGGTTAGTAAATTTTTCATTTTCTGTCAGTTGACAACCTGAGGCAAAATATTTTTATCGAGGGGTCTTTCTCTTTATCTTAGTGCCTGATGTCCTAATCGTGTTCATTTCGTTAGGAGTGGAGAATGAGTTTAAGGTGGGAAATGAGTTAGTTCATCTATCACATTTATATACACTCTCTTTTTGTTCTGGGCAGGTCTAATTGGTCTTTTGTCTTTCTTTGAAGTTAATCTCTGACCTTGGGATGGGGAAAATCTCCATCATAGGCTTAAATTGTTGTCTCTCTAAGTTGACTTCTTAGGCTTTTTGGAAGGGTGTGGGGTGAGTCAGTTCCCTTCCTCTTATCTAGGACTTCATTTGAGTGGTAATTCGAAGAACCAAACTTCCTTCAATCCTCTCATGGAAAAAAATTCAGAAGCAGTTGTTTGCATGGAATATAGCATTACTGTCTACAGGAGGAAGGCTTACTCTTCTCTAGTTGGTTTTGTGTGGGATTCCCAATTATTTTTTATTTTTTATTTTTTGTTTAGGATTCTGGTATTAGTGAGACAAAATATTGAGAGAGTGATGAGAAATTTCTTGTAGGAAGGCGTCAACGAGAGGTGAGGGTCCCATTTGGTTAAGTGGGAGGGGCTGTTGAAGACGGTGGAGCTAGGAGGTTTAAAGATTGGGAGCTTGAGATGACACTAGGAGGCTCTCCTCTGGCAAAATGGTTATGGCGGTTCTTCATGGAGCTTAATGCTTTGTGGTACAGAGCTATTTTGAGTAGGTATGGTCTATACAACCCTCTAAACGGGTTTCAAGTGGTGGTTCTAAGGGTTGTAGTAGAAACATTTGGGAAGCTATAACCTCTGATTTCCCCTAGTCTATGAATTGTTCCTTTTTGGAATGCTTAAAGGGTTATTTTTTGGAGGATTGTTGGGTAGGTGATTGCCCTCTATGTTCATTGTTTCTTTTTGTGGTTATAACATTTATCAAACAATAAATTGCGTCCAATGGCCCATACTTCCTTTTCTCAAAATCTCTACTCTTTGATTTCCTTAGTTTTTAGTTGCCCTCTATATGATAGACAGACAACACAATTGGTCCGTTCTTCTTTCCCACCTCCCTGACCAACACCCATCTCTTTGGGTACACATTTATAACCAGCCCTGCAATAAGTTCCATTCTTGGGTTTTCTCTTTCCATTATTTTTCCACACTTTATCTACCCCTCCTCTGCCCCAAGCTGCCTCTGTTTTCTCCTCTCTTTGGAAGGTTAAAATTCGAAAGAAGTCAAACTTTTGTGTGGTGGGTCGTACTTGCTATGGTATATTCTTTGTAGTTGACAGGAGGAGGACCTTAACCATATGTTATGGGTTTGCGAATTTGTGCTATCCCTCTGGAATGATTGACAAACTTTCTTGTTTTATGTTTGGCCATTTTGAGAAGGGGAATCTGATGTTATGGGTTACTTTATGGTGGAGGAGGTGAATCTGAGTTCTCCATTTCGAGAAGGGGCAAAGTTTTTGTGGCATGCTAGTTTCTTTGTCGTTTTGTAGGCATTTGGCTCGAGAGGAATAACATGATCTTTAGAGAGGCAGAGAAATTGTGTGAGGAAGTTTGAGAGGCTCTTGATAAAAGCTTGGTTTCATCACTATATATATATATAGAAAATTGGAATATCAATCAGATAACATTTTTCATTTAATTTTGATTGGATGGATTTCTATTATAATATAAAACTTTTTCTTGATGTGTTAGTGTTATATTCATAACATGCTTCCTTCACTATTTCTTTACTTTTAAGATGTATGCAAATATTGTCATCTTTGCAACTTATGTGGCTGGCAGCTAATTTTGCAGGTGCATTCCTGCTAGCTGAATCC

mRNA sequence

ATGAGTGGAGGAAGCATCCGATGCTCACCAATCAGTTCCGTCACGCCACCCCTGGCCTCGGCATCGCCCTCGTCGCTTTCGGCATCTACCTTGTCGGCGAGCAAGTCTACAACAGGATCAATTCTCCCTCTTCTTCTCACCACCACCATGCCGATGCATCGTCCGCCACCCATTAACTGCTACCGGAAGGCGTCAACGAGAGGTGAGGGTCCCATTTGGTTAAGTGGGAGGGGCTGTTGAAGACGGTGGAGCTAGGAGGTTTAAAGATTGGGAGCTTGAGATGACACTAGGAGGCTCTCCTCTGGCAAAATGGTTATGGCGGTTCTTCATGGAGCTTAATGCTTTGTGGTACAGAGCTATTTTGAGTAGGTGCATTCCTGCTAGCTGAATCC

Coding sequence (CDS)

ATGAGTGGAGGAAGCATCCGATGCTCACCAATCAGTTCCGTCACGCCACCCCTGGCCTCGGCATCGCCCTCGTCGCTTTCGGCATCTACCTTGTCGGCGAGCAAGTCTACAACAGGATCAATTCTCCCTCTTCTTCTCACCACCACCATGCCGATGCATCGTCCGCCACCCATTAACTGCTACCGGAAGGCGTCAACGAGAGGTGAGGGTCCCATTTGGTTAAGTGGGAGGGGCTGTTGA

Protein sequence

MSGGSIRCSPISSVTPPLASASPSSLSASTLSASKSTTGSILPLLLTTTMPMHRPPPINCYRKASTRGEGPIWLSGRGC
Homology
[Close]
BLAST of Clc11G00110 vs. NCBI nr
Match: KAG6601665.1 (hypothetical protein SDJN03_06898, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 99.4 bits (246), Expect = 1.5e-17
Identity = 57/61 (93.44%), Postives = 57/61 (93.44%), Query Frame = 0 

Query: 2   SGGSIRCSPISSVTPPLASASPSSLSASTLSASKSTTGSILPLLLTTTMPMHRPPPINCY 61
           SGGSIR SPISS TP LASASPSSLSASTLSASKSTTGSILPLLLTTTMPMH PPPINCY
Sbjct: 102 SGGSIRVSPISSDTPLLASASPSSLSASTLSASKSTTGSILPLLLTTTMPMHPPPPINCY 161

Query: 62  R 63
           R
Sbjct: 162 R 162

The following BLAST results are available for this feature:
BLAST of Clc11G00110 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6601665.11.5e-1793.44hypothetical protein SDJN03_06898, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Clc11G00110 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc11G00110 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc11G00110 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..36

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc11G00110.1Clc11G00110.1mRNA