Clc10G22420 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G22420
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	50S ribosomal protein L17
Location	ClcChr10: 35346593 .. 35354547 (-)
RNA-Seq Expression	Clc10G22420
Synteny	Clc10G22420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGAAACCCTCCAGACGACCTATTCCTTATCTTGTTATCCATATACCACGGACTGGGACGCCCATACAATGGCAATGGCGATTACAACGGCGACAGCAAATGGCCGATGGAGCTTTACAACATTGAGGTCAGCGCTACCTTCTGTAGGATCAGAAATTTTTACTCCCACTCGCGTTAGCTTCCCGCTGTCCAATGTTCGAGTCAATTGCAGAACCTGCAGCAAACCAATCGCCACATTTTCGGGTCTATGCCCCTTAAACCCCCTCATTTCTACTGGGCTAGCAGGTGAAATCCCATACCCTCTCACTTGTTACTTAGGTCGCCCCCTCTAATTTGATTTTTCTTCTGCTAAATCATGCGTCTATTCTGCTTCGAATAGCTGATTGATTCATGACCTATGAATTGAATGGTTCTGCAATAATATATTGTTCTTTTATTTTGATTTCTATTTGAATTGATACGTCCCTTTTAGGATTTTTCTTGGCAGCGTTCTGCTACAAATACTGTACTGAAGTCTCCTGTAACAGTTGGAAATCTTAAGTTCATCTTCGCGGAAAATGAAACGTTGTTCCTCGTTTGTTCCGCACCCATTGAGTAACAATCGAAGAGAAAACGTGAAAATCTTTAATTTTTTAAAAATATTTTCTTGACGCAAGGTAACACTAACCGGGGGGGGGGGGGGGGGGGGGGGGAGTTGCAAACCCGACTGGTTTTACTTGGCCCGTCACAGTTTAGAATGCTTTCAGAGGGATTTCGTTTGTGCCTTCGGGGACACCTTAACATTTAGGATCTGGTTGGTGTTTTGATTGTATTTCTAGGCCTGAATTATGAGAAATATGCCCGTTGAAGTTTGTGCATTTTCAGGATTTCTATAAGTAAGAGAGTGAATATAAAAATGGAAGAAAATAGGAATGCTTAGAATAGTAGTGTTGAGGATCCCACATCGTAAAAATTAAAGGACCTTATACTCTCAGTAAGATAGACGAGTATTGCCAATTGGTTTTGAGATGAAACTCCATATTAGTATATAGAGCCCAGAAAACCCAAATGGGCATGCTGTCCAATAAAAAGAAATTGGGACATGATTAAGAATGGTGAACTCAAAAGAGATACCATCTTGAGAGGCATGTTGAGGATCTTACATCGAAAAAATCAAGGGACCTCACACTATTAATAAGATAAATGGATTACTCCTCTCATTTTCAATTGATTTTGAGATGAAACCCCATATTATCTAATAAGTAAGAAATTTAAATAAATTATTTCATTCCATACGGCTAAGTATAAATAATACACAAGGGGATGGGGAAAATATTGCCCACCTTATAAGAGAGTGCCATGTGGTACAACGAATTAGAAAACAATAATAGGATTGGACTAACTGGTTTGACATGGCCTGTCACAGTTCATAATTTTTTCAAAGGGGTTTCGTTTGGGCCTTCGTGGGCACCTTAACATTTAGTATATGATTGGTGTTTTGATTTTATTCCTAGGCTTGAAATATGATAAATATGCCCATTGAGGTTGGTGTATTTTTAGGATTTCTATCATTAAGAGAGTGAACATAAAACGGAACAAAGAAAGGGAAGAAAATAGTAATGTTAAGCATAGTAGGAAGCTCGAATGAATTATTTCATTTCATAGGGCTGAGTATAAATAATACACGAGGGGATGGGAAGAATTTTACCCACCTTACGAGAGAGAGCCATGTCGATTCAGATAACAATAACAAGTATTGTGTAACAAATCAAACAGACACCATTTGTAGTGAATTCAAATGTTTTTCGGGCACCATAATTCTTTGTTCTTTTTACCATATTTAGAGATGAATTGAAACCCTGTCTTCTGTGCACCATAATTTTATTCCCAACACCTTGCGCCTATATTACCAAGTGGTCAATATCATGTGCTTGCTTAGTACTAGGTTGAGTACAAACCTTACGTGTTAGATTAAAGTATTGTGCACATGATATAAATGCTCTAGCATATTGCTCTCACAGAGCATGTTATTACTTTCACATATCCATTAATGAGCTAAGTTAACGTTTCAACATTAGCATTTGTTAGTTAATATGAATTCCTAGATGCATTTGTTATTCAAATGCTCAGTTGCATTTGAGGTTATGAATTTTAAACCTTAGTGACTGAGAATTTACAAGTTTATTCACGTCAAATATTGTATAGAGTTAGGAAGTTGGCTTGTAAAATTAGATGGTGTATGCCTTAAGCTACCCCATACACCAACAATTATAATAAAAATGATATATTGTCAATTGGTACATAAATCTCATCAATAAGAACAGTTATTTTAAGATCATAAGCTAATAGCACATGGAATTCCTGAGATTCATACAAGTTTCTATAGTTTCTTTTGCGTGCACTAACTGTTGTAGAACCTATGATGCGCTTGTTCATCATGCAGATTACAACGGCTTTGAACATAACTTTAAAATTGTTGATAGTGGTAGCCGATTTTTTGCCATGAGACACGGAAAGCGGGTACCTAAGCTAAATAGGCCTCCTGACCAACGACGTGCACTATTGCGAGGGCTTACCACCCAACTCCTTAAGCATGGTCGGATTAAAACCACCAGAACAAGAGCAAGTGCCATGCGTAAGTATGTTGACAAAATGATTACATTAGCAAAGGACGGTTCCTTGCATAAAAGGAGACAGGCTTTAGGCTTCATCTACGAGAAGCAGATTGTTCACGCTTTATTTGCAGAAGTCCAAGATAGGTATGGGGAGAGAAATGGTGGATATACCAGAATTATAAGAACACTGCCTAGGCGAGGGGACAATGCGCCCATGGCATACATTGAACTTGTCTGAATATTGGCCAGTTATGTTTGTATTGGAGTCAACCAATTCTAGGAATTGTGATGAGATGTTATCCGTTTTGAGGCGTTGCCACATGTATGATTATAAACCTTGTATTAATATATGCATGCATATACATACATGGTGGACATAAATATTTTGTCAAGTCAATTTGGTCTATATTATGTGGAGCTAAGCAGTTTTTTTCTTTTCTTGCATTCCTACTAACATATAGTGGTCGGCTGGAGGGTCAAGGATGACCGTCTACGTTTTAACCTCATCAAGATCATCCTCTCTCCACTTTGTTGTCGATCATCCTCCTATAATTTTATCTCTATTTTTTTCTCCTGTCAAACCTTGCATGGTATTTAAGCTTCTTAAGTTAAATGCCTCGCTGGGGGTGCATGCATATGGTCCATAGTTTACTGAAAATCAGGAAATTTAATTTTATGTTAGAAGTTGTAGGTTAAATTATAAGTTTGATTATGGTATTACCTTAAAAAAAAAACTATACTTTCAATTTGTGTTTAACAAGTTTTTATTATTAAATTTTATTTATTTAACAATTAGTTAACGTGCTAACGGTTCTATCAAAGAATAATGTTTAAATGTGTTTTAAATTAAGATATCATCATATCATGTATTCCTTGGATGTTACATAGTTCGTGTTCTATGTTATACTTAAATTGATGGTAATTATTATTAGAGACATAATTGAGAACAGTCACAATGCTATAAATTCAAAGGCCAACTTGTAGTTTAGCCAAAGTTTTATTTTAGGACAAGATGTGTTTGTGGTCTTTATATGTCTAGAAGAAATTTTTAGGGTCTGTTTGGTAGGAAATTCAAATTCTGTTTTTGTTTTTTGAATTTAGTAAATATATAATTAGCATAGAGTGTCCAAACAAAAAAAAAAACTGGCTGAAAACCGACCGAACCAATGTTCACCGGCCGATTTTACAGGTTTTTCGGTCGTGCGACAAATTTTTTATTTTGAAAAACTGAAAGTCGCCGATCGGAAGGTCTGAAACCACACATTTTTAGACCGATGTTATTGGACATCTTCTTCAGTATACTCGATTGACATGAACAATAAAAAAGAAAACTGCCATTTATATAATTAATGTATGGATTGACGTGAAAATACCTTTATCAACAAAAAAAAAAAAAAAAAAAAAAAAAAATCAAATACTAAAGAATTCTTTTTCCTTCTTTTCATCCTTCATCCTGATTGATGTGATATGATCAATTAGAATGAAAAGTAGTTGAAAAATAAATTGGACAAAGTATTTTATTTCCTAATTAGTCATTTGTTCATTCCCAAGGTGAGAAGCAAGTAAAATTTTGCATCAAAATGAAATAGTTCAATTAAATAAGAAGCAAACGCTTACCTCAAATAAACACCATTTTAAGGTTGTGACAACTTTTGCTTTAAACAATAATTGAAACCTAATAACAAAATGGATTTTGATGGATTGGTGAAGACAATTTGTCATCATAGGTTTAAGGGAATATAGCGAGAGGAGTTAGAAATTTAAGAGAATACAGTATATATAAGAATTGATTTAATTCTTTTAATTTTAATTTCATAATTCTTAATTTTAAATGACAAGATTGTTGAAAATATTTATAAATAACAACAAAATATCGCAGTTTAGATAGATTGCGATAGATTATTATTTGTGTCTATCATGACACAAATAAACATATATAGTAGCCTATCATGATCTATCCCAGATAAACAGTAAAATGTTACTATATTTGTAAATATTTTTGTTCATTTTCCTATATTTGAAAAAAAAACCCATTTTATTACCTTTATGTTAGTATATTTTAATTAATTTTTTATTTCATAAGAATCTTAGTAACTCATTCAATCTTTTTTTCTTTTTGATTTTTTTATTTTACGTGAAGATGAAAAAGGAGGATATCACTAATATCTATCTAAGATATATCAATGTTATCATTAATCATTGATATTACCAATACACTGATATCTACTTAAGTCATATAACTAATATCATTGATATCATTGATATGTACTTTAGTCACACCACTGATATCTATCTAAGGTATATCTCTTAAATCACTAATATTTTGACGCTAAGGCTATCAATGATATCACGGATATTACCAGTATACAGACATCACTGATATCTATGTAAGTTTTATCACTGATACATGGATATCATTAATATATACTAAGTTATATCACTAATATCATTGAAAATAAATATTACCGATACACGAATATCACTATATCTACCTAAGTCATATCACCAATATCATTGATGTCATTGATATCTATTTAAGTCAAATTGCTAATATGAGGATATCACTGATATACCTAAGTTATATCACTAATATCATCGATTTTAAACGATAGAATTACAAAATTCATATTTTTCACATTTAAATAGGGTTTTAGTATATTAGTAGCTATCACCGATAGATTTATATTATTATGTCATAATAATAGAAGTTTATCGCTAACAACTACTAACAAATTTTATAAATTTTAGAGTTTTAGTTTGATATTAAGTATTTACCAATAAATTATTATATATTATTTGATATAAGTATACAAATAATAAATTTCTATCACTGATTTAAGTAGCTTGTTAGTGATAGAAGCATATCATTGATAGACTATGACTTAGTCTATCGATGATATCATAAGCTATTAATAACAACAATTTATTACTAATAGATTTCATACTTTTAAAGTCCTAAAAAATAACAAAAGAAATAAAAAAAAAAATAAAAATAAAATTATGCATCCATTTGATAATGTTCTAGTTTCTCTTTTTTTTTTTTTAGAAACAAACTTATTTGATAAACATTATTATTTTTTTTAATTTCTAAAATTTAAAAAACATTTCTAAAAAATTTGCAAATTCAATAACTAAAAAAAAGTAGTTTCTTTCAAAGCAATTTTCACTTGTTATTTACATTTAACGTTTCTTTTTAAATATAAAATTTAATAATTGGCTGTTGGTGTTAAGGTAATGATGAAAATGATTATGCACTTTCATTTCCCTAATTTTAAAGATTTGCTATATTTTCAAATCATTTCCTTAATTTTGTATCTGCTATAGTTTGTTCTATATAGAAAATGTACACGCTAGCAATCACACAATAGAAAAATGAAAATAAAATATATCCTATATGCCCTATTTATATTATAATATATCAATATTAAATATATATAATAGCAAATAAACATGGGACAATTAATTATAGACATCTATTATTGATAGACTTCTATTAATAATAGATCAATCCAGTAGGTTTATCAATAATAAATCTTAGTCATTGATAGATCTATCATTAATAAGTATCGAATAAAGATTTGTCTATCACTAATCGATAGGACTTAAAATTGTACTACAACCATAAATATTTTTATGGATTATGTTAGATTTATTATTTTGTACTAGATTGTTATAAATACAACTTCTTCAAATTGGGGTGGTCAATGTACATGTCTCAATTTTGATGCTACTATATAAGAAGAGAATTTTTTTTATACTATGTTCGTTTATTGTTTGCTATGTTGGATTATTGTTGCTATGATAATATTAAATTAAAAATAATTATGAAACTTATGGAATACATTAACATATTATTTTGATGATATGTCATAAAAAATTATGAAAGGGTAGCAGTAGCGTTGATAGATGGAGGGGCGGGGAAGTCAAAGGCTACTTTGGTCATGGTTCAACGAAACCGCCCAAGCCGTAGGTGGACAATAATTTAAGTTGAATGTGGCAGCCGCACCAATACAAAACCAAAACTGTAAATAAAAAACTAGTAATATCTTAGGCAATGATGGGTGACAGAGGCTGGGGGATGGTCCTGAGCCACTAAAAATTGTATAATTTATTGGGGATTCCATGGTGGTGAGAATAATTTAAGGGGACTCCGTGGAATATGAGGGGAAGAAAAGGAGATAGCATAGGGTTTGGGGGTTTTCGTAAGAAAATAAATCAAATAAAACTTAAAAAAAATATAATATTAATAGGAGGGGGTGGCGTGGATTTGTTTCTCTCCCCTCCGTCACAATTTATTTGTTCTCACCCCCCGTCCAAAGTGCATAAACAAACAAAGAGAGACATCACAGCATGATGAGGATGAGGCCAGGCGGGCACTTGCAAAATAGTAATACATATATCTGACCGCACACACAAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGAAGCTGTTGTTGTACATCTAGCTAGCTACTTCCAGAGACAAGAAGTTAAATATATAGTATTATTAGAAATGACAAAGGTATTCCCAAACGGGTCTTCCTCCTCCCGCAGCGACGCCACCGAGACTGTCCTCACCGTGTGGAAGAAATCTATGTTGTTGAGCTGCGAGGGGTTTACCGTGTTTAACGGCGACGGTAATTTGGTTTATAGGGTGGACAACTATCTGGCAGGCAATAAGGGGGAGATCCTTCTCATGGACGCCGCCGGCAACCCTCTCTTCACAATCCGTCGCAAGGTACTATGCTCTAGTTCTGTTTTAATTTACCTTTTAATTAACTTTTGGTTTTATAATATATATAATACACACACACACACATATAATTAAAATACATACAGAGATTGAGCCTAGCCGATAGCTGGGTGGTTTACGAGGGTGAAACAGGCGTGAATCCCCGGTTCTGTGCGAGGAAGCAGATGAATCTGCTTAAGTCAAAGTGCCTGGCTCGTGTTGTCGAAGCTATGGGTATGGGTGTGTATGAGATCGAGGGGTGTTATGGGAAGAGATGCTGTGCGGTGTACGATGAGAAGCGGAGAATAGTGGCAGAGATCAAACGCAAGGAGGCAGCGGGAGGGTTGAGCTTCGGGACGGACGTATTCCGCCTCATCGTCCAGCCTCAGATTGATACCACACTAGCCATGGCCCTCCTCGTCCTTCTGGACCAGATGTTTGGATCTTCTTCCACTACTCCATGACACCCATGCATCAAAATCAACACTTCCTAACTCTCGTCTCCACTTTTTCTATACTCCTCCTTTTTCAAATGCCTTTCCCTCCCTTGTTTCTCTCGTTCACTGTACATAATAAACTATGATAAACATACCACAATTTTCTAACAACGTCCTTCTGCCTACGTAT

mRNA sequence

CTGAAACCCTCCAGACGACCTATTCCTTATCTTGTTATCCATATACCACGGACTGGGACGCCCATACAATGGCAATGGCGATTACAACGGCGACAGCAAATGGCCGATGGAGCTTTACAACATTGAGGTCAGCGCTACCTTCTGTAGGATCAGAAATTTTTACTCCCACTCGCGTTAGCTTCCCGCTGTCCAATGTTCGAGTCAATTGCAGAACCTGCAGCAAACCAATCGCCACATTTTCGGGTCTATGCCCCTTAAACCCCCTCATTTCTACTGGGCTAGCAGATTACAACGGCTTTGAACATAACTTTAAAATTGTTGATAGTGGTAGCCGATTTTTTGCCATGAGACACGGAAAGCGGGTACCTAAGCTAAATAGGCCTCCTGACCAACGACGTGCACTATTGCGAGGGCTTACCACCCAACTCCTTAAGCATGGTCGGATTAAAACCACCAGAACAAGAGCAAGTGCCATGCGTAAGTATGTTGACAAAATGATTACATTAGCAAAGGACGGTTCCTTGCATAAAAGGAGACAGGCTTTAGGCTTCATCTACGAGAAGCAGATTGTTCACGCTTTATTTGCAGAAGTCCAAGATAGGTATGGGGAGAGAAATGGTGGATATACCAGAATTATAAGAACACTGCCTAGGCGAGGGGACAATGCGCCCATGGCATACATTGAACTTGTATTCCCAAACGGGTCTTCCTCCTCCCGCAGCGACGCCACCGAGACTGTCCTCACCGTGTGGAAGAAATCTATGTTGTTGAGCTGCGAGGGGTTTACCGTGTTTAACGGCGACGGTAATTTGGTTTATAGGGTGGACAACTATCTGGCAGGCAATAAGGGGGAGATCCTTCTCATGGACGCCGCCGGCAACCCTCTCTTCACAATCCGTCGCAAGAGATTGAGCCTAGCCGATAGCTGGGTGGTTTACGAGGGTGAAACAGGCGTGAATCCCCGGTTCTGTGCGAGGAAGCAGATGAATCTGCTTAAGTCAAAGTGCCTGGCTCGTGTTGTCGAAGCTATGGGTATGGGTGTGTATGAGATCGAGGGGTGTTATGGGAAGAGATGCTGTGCGGTGTACGATGAGAAGCGGAGAATAGTGGCAGAGATCAAACGCAAGGAGGCAGCGGGAGGGTTGAGCTTCGGGACGGACGTATTCCGCCTCATCGTCCAGCCTCAGATTGATACCACACTAGCCATGGCCCTCCTCGTCCTTCTGGACCAGATGTTTGGATCTTCTTCCACTACTCCATGACACCCATGCATCAAAATCAACACTTCCTAACTCTCGTCTCCACTTTTTCTATACTCCTCCTTTTTCAAATGCCTTTCCCTCCCTTGTTTCTCTCGTTCACTGTACATAATAAACTATGATAAACATACCACAATTTTCTAACAACGTCCTTCTGCCTACGTAT

Coding sequence (CDS)

ATGGCAATGGCGATTACAACGGCGACAGCAAATGGCCGATGGAGCTTTACAACATTGAGGTCAGCGCTACCTTCTGTAGGATCAGAAATTTTTACTCCCACTCGCGTTAGCTTCCCGCTGTCCAATGTTCGAGTCAATTGCAGAACCTGCAGCAAACCAATCGCCACATTTTCGGGTCTATGCCCCTTAAACCCCCTCATTTCTACTGGGCTAGCAGATTACAACGGCTTTGAACATAACTTTAAAATTGTTGATAGTGGTAGCCGATTTTTTGCCATGAGACACGGAAAGCGGGTACCTAAGCTAAATAGGCCTCCTGACCAACGACGTGCACTATTGCGAGGGCTTACCACCCAACTCCTTAAGCATGGTCGGATTAAAACCACCAGAACAAGAGCAAGTGCCATGCGTAAGTATGTTGACAAAATGATTACATTAGCAAAGGACGGTTCCTTGCATAAAAGGAGACAGGCTTTAGGCTTCATCTACGAGAAGCAGATTGTTCACGCTTTATTTGCAGAAGTCCAAGATAGGTATGGGGAGAGAAATGGTGGATATACCAGAATTATAAGAACACTGCCTAGGCGAGGGGACAATGCGCCCATGGCATACATTGAACTTGTATTCCCAAACGGGTCTTCCTCCTCCCGCAGCGACGCCACCGAGACTGTCCTCACCGTGTGGAAGAAATCTATGTTGTTGAGCTGCGAGGGGTTTACCGTGTTTAACGGCGACGGTAATTTGGTTTATAGGGTGGACAACTATCTGGCAGGCAATAAGGGGGAGATCCTTCTCATGGACGCCGCCGGCAACCCTCTCTTCACAATCCGTCGCAAGAGATTGAGCCTAGCCGATAGCTGGGTGGTTTACGAGGGTGAAACAGGCGTGAATCCCCGGTTCTGTGCGAGGAAGCAGATGAATCTGCTTAAGTCAAAGTGCCTGGCTCGTGTTGTCGAAGCTATGGGTATGGGTGTGTATGAGATCGAGGGGTGTTATGGGAAGAGATGCTGTGCGGTGTACGATGAGAAGCGGAGAATAGTGGCAGAGATCAAACGCAAGGAGGCAGCGGGAGGGTTGAGCTTCGGGACGGACGTATTCCGCCTCATCGTCCAGCCTCAGATTGATACCACACTAGCCATGGCCCTCCTCGTCCTTCTGGACCAGATGTTTGGATCTTCTTCCACTACTCCATGA

Protein sequence

MAMAITTATANGRWSFTTLRSALPSVGSEIFTPTRVSFPLSNVRVNCRTCSKPIATFSGLCPLNPLISTGLADYNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELVFPNGSSSSRSDATETVLTVWKKSMLLSCEGFTVFNGDGNLVYRVDNYLAGNKGEILLMDAAGNPLFTIRRKRLSLADSWVVYEGETGVNPRFCARKQMNLLKSKCLARVVEAMGMGVYEIEGCYGKRCCAVYDEKRRIVAEIKRKEAAGGLSFGTDVFRLIVQPQIDTTLAMALLVLLDQMFGSSSTTP

Homology

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BLAST of Clc10G22420 vs. NCBI nr
Match: XP_038906261.1 (50S ribosomal protein L17, chloroplastic [Benincasa hispida])

HSP 1 Score: 401.0 bits (1029), Expect = 1.2e-107
Identity = 202/208 (97.12%), Postives = 204/208 (98.08%), Query Frame = 0


Query: 1   MAMAITTATANGRWSFTTLRSALPSVGSEIFTPTRVSFPLSNVRVNCRTCSKPIATFSGL 60
           MAMAITTATANGRWSFTTLRSALPSV SEI TP+RVSFPLSNVRVN RTCSKPIA+FSGL
Sbjct: 1   MAMAITTATANGRWSFTTLRSALPSVRSEICTPSRVSFPLSNVRVNSRTCSKPIASFSGL 60

Query: 61  CPLNPLISTGLADYNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQL 120
           CPLNPLISTGL DYNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQL
Sbjct: 61  CPLNPLISTGLPDYNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQL 120

Query: 121 LKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYG 180
           LKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYG
Sbjct: 121 LKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYG 180

Query: 181 ERNGGYTRIIRTLPRRGDNAPMAYIELV 209
           ERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 181 ERNGGYTRIIRTLPRRGDNAPMAYIELV 208

[Close]

BLAST of Clc10G22420 vs. NCBI nr
Match: XP_008442307.1 (PREDICTED: 50S ribosomal protein L17 [Cucumis melo])

HSP 1 Score: 388.3 bits (996), Expect = 8.1e-104
Identity = 197/208 (94.71%), Postives = 200/208 (96.15%), Query Frame = 0


Query: 1   MAMAITTATANGRWSFTTLRSALPSVGSEIFTPTRVSFPLSNVRVNCRTCSKPIATFSGL 60
           MAMAITTATANGRWSFTTLRSALPSVGSE  T TRVSFPLSN RV+ RTCSKPIA+FSGL
Sbjct: 1   MAMAITTATANGRWSFTTLRSALPSVGSENCTRTRVSFPLSNARVSRRTCSKPIASFSGL 60

Query: 61  CPLNPLISTGLADYNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQL 120
           CPLNPLISTG ADYN FEHNFKIVD+GSR FAMRHGKRVPKLNRPPDQRRALLRGLTTQL
Sbjct: 61  CPLNPLISTGSADYNDFEHNFKIVDNGSRVFAMRHGKRVPKLNRPPDQRRALLRGLTTQL 120

Query: 121 LKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYG 180
           LKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYG
Sbjct: 121 LKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYG 180

Query: 181 ERNGGYTRIIRTLPRRGDNAPMAYIELV 209
           ERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 181 ERNGGYTRIIRTLPRRGDNAPMAYIELV 208

[Close]

BLAST of Clc10G22420 vs. NCBI nr
Match: XP_004137669.1 (50S ribosomal protein L17, chloroplastic [Cucumis sativus] >KGN58675.1 hypothetical protein Csa_001558 [Cucumis sativus])

HSP 1 Score: 383.6 bits (984), Expect = 2.0e-102
Identity = 196/210 (93.33%), Postives = 201/210 (95.71%), Query Frame = 0


Query: 1   MAMAIT--TATANGRWSFTTLRSALPSVGSEIFTPTRVSFPLSNVRVNCRTCSKPIATFS 60
           M+MAIT  TATANGRWSFTTLRSALPSVGSEI T TRVSFPLSN RV+ RTCSKPIA+FS
Sbjct: 1   MSMAITTATATANGRWSFTTLRSALPSVGSEICTRTRVSFPLSNARVSRRTCSKPIASFS 60

Query: 61  GLCPLNPLISTGLADYNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLISTG ADYNGFEHNF+IVD+G R FAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISTGSADYNGFEHNFEIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180
           QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR
Sbjct: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180

Query: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 209
           YGERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 210

[Close]

BLAST of Clc10G22420 vs. NCBI nr
Match: XP_022157331.1 (50S ribosomal protein L17, chloroplastic [Momordica charantia])

HSP 1 Score: 368.2 bits (944), Expect = 8.7e-98
Identity = 182/208 (87.50%), Postives = 192/208 (92.31%), Query Frame = 0


Query: 1   MAMAITTATANGRWSFTTLRSALPSVGSEIFTPTRVSFPLSNVRVNCRTCSKPIATFSGL 60
           MAMA TTA  N RWS T LR+ALPSVG EI TP RVSFP +  RV+CRTCSKPIA+FSGL
Sbjct: 1   MAMAFTTAATNSRWSLTALRAALPSVGVEIHTPARVSFPSATGRVSCRTCSKPIASFSGL 60

Query: 61  CPLNPLISTGLADYNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQL 120
           CPLNPLISTGL+D++ FEHNF IVDSG R+FAMRHGKRVPKLNRPPDQRRALLRGLTTQL
Sbjct: 61  CPLNPLISTGLSDFDSFEHNFTIVDSGCRYFAMRHGKRVPKLNRPPDQRRALLRGLTTQL 120

Query: 121 LKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYG 180
           LKHGRIKTTR RASAMRKYVDKMITLAK+GSLHKRRQALGF+YEKQIVHALFAEVQDRYG
Sbjct: 121 LKHGRIKTTRARASAMRKYVDKMITLAKEGSLHKRRQALGFVYEKQIVHALFAEVQDRYG 180

Query: 181 ERNGGYTRIIRTLPRRGDNAPMAYIELV 209
           ERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 181 ERNGGYTRIIRTLPRRGDNAPMAYIELV 208

[Close]

BLAST of Clc10G22420 vs. NCBI nr
Match: XP_038905122.1 (protein LURP-one-related 8 [Benincasa hispida])

HSP 1 Score: 359.4 bits (921), Expect = 4.0e-95
Identity = 178/191 (93.19%), Postives = 183/191 (95.81%), Query Frame = 0


Query: 208 VFPNGSSSSRSDATETVLTVWKKSMLLSCEGFTVFNGDGNLVYRVDNYLAGNKGEILLMD 267
           VFPNG SSS SDATETVLTVWKKSMLL+CEGFTVFN DGNLVYRVDNYLAGNKGEILLMD
Sbjct: 4   VFPNGPSSSCSDATETVLTVWKKSMLLNCEGFTVFNADGNLVYRVDNYLAGNKGEILLMD 63

Query: 268 AAGNPLFTIRRKRLSLADSWVVYEGETGVN-PRFCARKQMNLLKSKCLARVVEAMGMGVY 327
           AAGNPLFTIRRKRLSLADSWVVYEGETG+N PRFCARKQ+NLLKSKCLARVVEAMG GVY
Sbjct: 64  AAGNPLFTIRRKRLSLADSWVVYEGETGLNPPRFCARKQINLLKSKCLARVVEAMGRGVY 123

Query: 328 EIEGCYGKRCCAVYDEKRRIVAEIKRKEAAGGLSFGTDVFRLIVQPQIDTTLAMALLVLL 387
           EIEGCYGKRCC VYDEKRRIVAEIKRKEAAGGLSFGTDVFRLI QPQIDTT+AMALL+LL
Sbjct: 124 EIEGCYGKRCCEVYDEKRRIVAEIKRKEAAGGLSFGTDVFRLIAQPQIDTTVAMALLILL 183

Query: 388 DQMFGSSSTTP 398
           DQMFGSSS TP
Sbjct: 184 DQMFGSSSNTP 194

[Close]

BLAST of Clc10G22420 vs. ExPASy Swiss-Prot
Match: Q9M385 (50S ribosomal protein L17, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL17 PE=2 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 3.3e-76
Identity = 151/208 (72.60%), Postives = 171/208 (82.21%), Query Frame = 0


Query: 1   MAMAITTATANGRWSFTTLRSALPSVGSEIFTPTRVSFPLSNVRVNCRTCSKPIATFSGL 60
           MAMA  T + +  WS ++L+SALPS  S +  P+  S     +R+   + S P  +FSGL
Sbjct: 7   MAMATPTDSVSRVWSMSSLKSALPSTAS-LRLPSSSSRRPVTLRLPISSPSLP--SFSGL 66

Query: 61  CPLNPLISTGLADYNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQL 120
            P+NPL+S GL D+  FE+ FKIVD G R +AMRHG+RVPKLNRPPDQR+ALLRGLTTQL
Sbjct: 67  SPVNPLLSIGLPDWQSFENGFKIVDGGGRIYAMRHGRRVPKLNRPPDQRKALLRGLTTQL 126

Query: 121 LKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYG 180
           LKHGRIKTTR RASAMRK+VDKMITLAKDGSLHKRRQALG+IYEKQIVHALFAEV DRYG
Sbjct: 127 LKHGRIKTTRARASAMRKFVDKMITLAKDGSLHKRRQALGYIYEKQIVHALFAEVPDRYG 186

Query: 181 ERNGGYTRIIRTLPRRGDNAPMAYIELV 209
           ERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 187 ERNGGYTRIIRTLPRRGDNAPMAYIELV 211

[Close]

BLAST of Clc10G22420 vs. ExPASy Swiss-Prot
Match: O80363 (50S ribosomal protein L17, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL17 PE=2 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 1.7e-72
Identity = 141/204 (69.12%), Postives = 164/204 (80.39%), Query Frame = 0


Query: 8   ATANGRWSFTTLRSALPSVGSEIFTPTRVSFPLSNVRVNC---RTCSKPIATFSGLCPLN 67
           A+A+  WS + L+SALPS+     +  R S   S  R+     ++ S+ + +F GL PL+
Sbjct: 2   ASASTTWSMSCLKSALPSIQPISSSSLRFSCGPSPSRLRICKPKSSSRLLHSFVGLAPLH 61

Query: 68  PLISTGLADYNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHG 127
           PL+S    D   FEH+F ++D+G R FAMRHG++VPKLNRPPDQRRALLRGLTTQLLKHG
Sbjct: 62  PLLSLSSQDSTSFEHSFTVIDNGGRVFAMRHGRKVPKLNRPPDQRRALLRGLTTQLLKHG 121

Query: 128 RIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNG 187
           RIKTT+ RA A+RKYVDKMIT+AKDGSLHKRRQALGFIYEKQIVHALFAEV DRYGERNG
Sbjct: 122 RIKTTKARARAVRKYVDKMITMAKDGSLHKRRQALGFIYEKQIVHALFAEVPDRYGERNG 181

Query: 188 GYTRIIRTLPRRGDNAPMAYIELV 209
           GYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 182 GYTRIIRTLPRRGDNAPMAYIELV 205

[Close]

BLAST of Clc10G22420 vs. ExPASy Swiss-Prot
Match: P82194 (50S ribosomal protein L17, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL17 PE=1 SV=2)

HSP 1 Score: 224.6 bits (571), Expect = 2.0e-57
Identity = 108/126 (85.71%), Postives = 121/126 (96.03%), Query Frame = 0


Query: 83  IVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDK 142
           ++D+G RFFAM+HG+++ +L+RP DQRRALLRGLTTQLLKHGRIKTTR +ASAMRKYVDK
Sbjct: 1   MIDNGGRFFAMKHGRKIHRLSRPADQRRALLRGLTTQLLKHGRIKTTRAKASAMRKYVDK 60

Query: 143 MITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNAPM 202
           MITLAK+GSLHKRRQALGFIYEKQIVHALFAEV +RYG+RNGGYTRIIRTLPRRGDNAPM
Sbjct: 61  MITLAKEGSLHKRRQALGFIYEKQIVHALFAEVPERYGDRNGGYTRIIRTLPRRGDNAPM 120

Query: 203 AYIELV 209
           AYIELV
Sbjct: 121 AYIELV 126

[Close]

BLAST of Clc10G22420 vs. ExPASy Swiss-Prot
Match: Q9ZVI6 (Protein LURP-one-related 8 OS=Arabidopsis thaliana OX=3702 GN=At2g38640 PE=2 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.6e-46
Identity = 96/196 (48.98%), Postives = 136/196 (69.39%), Query Frame = 0


Query: 202 MAYIELVFPNGSSSSRSDA-TETVLTVWKKSMLLSCEGFTVFNGDGNLVYRVDNYLAGNK 261
           M  +   FP+    S  D+    VLTVWKKS+L +C+GFTV+N +G LV+RVDNY+   +
Sbjct: 1   MTKVHPKFPSTCEESLCDSKAAVVLTVWKKSLLFNCDGFTVYNANGELVFRVDNYMNCPR 60

Query: 262 GEILLMDAAGNPLFTIRRKRLSLADSWVVYEGETGVNPRFCARKQMNLLKSKCLARVVEA 321
             I+LMDA+G PL +IRRK+LSL D W+VY+GET  +P F ARK ++++ ++     V A
Sbjct: 61  DNIVLMDASGFPLLSIRRKKLSLGDCWMVYDGETERDPIFTARKNVSIISNRKSLAWVSA 120

Query: 322 MGMGVYEIEGCYGKRCCAVYDEKR--RIVAEIKRKEAA-GGLSFGTDVFRLIVQPQIDTT 381
               +YEIEG YG+R C + DE+R  +  AEIKRKE   GG++FG DV++LIV+ +++  
Sbjct: 121 KKTVLYEIEGSYGQRSCKILDERRNKKKTAEIKRKETVIGGVAFGKDVYKLIVESEMEPR 180

Query: 382 LAMALLVLLDQMFGSS 394
           +AMAL ++LDQMF SS
Sbjct: 181 VAMALTIILDQMFRSS 196

[Close]

BLAST of Clc10G22420 vs. ExPASy Swiss-Prot
Match: B1XJI3 (50S ribosomal protein L17 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=32049 GN=rplQ PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.3e-40
Identity = 79/116 (68.10%), Postives = 100/116 (86.21%), Query Frame = 0


Query: 93  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSL 152
           MRHG RVP+L RP DQR+ALLR LTTQL++HG++KTT+ RA A+R  VD+MITLAKDGSL
Sbjct: 1   MRHGCRVPELGRPADQRKALLRALTTQLIRHGQVKTTKARAKAVRSEVDRMITLAKDGSL 60

Query: 153 HKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 209
             RR+ALG++Y+K +VHALFA+ +DRYG+R GGY+R++RT+ RRGDNA MA IELV
Sbjct: 61  AARRRALGYMYDKDLVHALFAQAKDRYGDRQGGYSRVVRTVRRRGDNAEMAIIELV 116

[Close]

BLAST of Clc10G22420 vs. ExPASy TrEMBL
Match: A0A1S3B652 (50S ribosomal protein L17 OS=Cucumis melo OX=3656 GN=LOC103486218 PE=3 SV=1)

HSP 1 Score: 388.3 bits (996), Expect = 3.9e-104
Identity = 197/208 (94.71%), Postives = 200/208 (96.15%), Query Frame = 0


Query: 1   MAMAITTATANGRWSFTTLRSALPSVGSEIFTPTRVSFPLSNVRVNCRTCSKPIATFSGL 60
           MAMAITTATANGRWSFTTLRSALPSVGSE  T TRVSFPLSN RV+ RTCSKPIA+FSGL
Sbjct: 1   MAMAITTATANGRWSFTTLRSALPSVGSENCTRTRVSFPLSNARVSRRTCSKPIASFSGL 60

Query: 61  CPLNPLISTGLADYNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQL 120
           CPLNPLISTG ADYN FEHNFKIVD+GSR FAMRHGKRVPKLNRPPDQRRALLRGLTTQL
Sbjct: 61  CPLNPLISTGSADYNDFEHNFKIVDNGSRVFAMRHGKRVPKLNRPPDQRRALLRGLTTQL 120

Query: 121 LKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYG 180
           LKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYG
Sbjct: 121 LKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYG 180

Query: 181 ERNGGYTRIIRTLPRRGDNAPMAYIELV 209
           ERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 181 ERNGGYTRIIRTLPRRGDNAPMAYIELV 208

[Close]

BLAST of Clc10G22420 vs. ExPASy TrEMBL
Match: A0A0A0L9N9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G727930 PE=3 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 9.7e-103
Identity = 196/210 (93.33%), Postives = 201/210 (95.71%), Query Frame = 0


Query: 1   MAMAIT--TATANGRWSFTTLRSALPSVGSEIFTPTRVSFPLSNVRVNCRTCSKPIATFS 60
           M+MAIT  TATANGRWSFTTLRSALPSVGSEI T TRVSFPLSN RV+ RTCSKPIA+FS
Sbjct: 1   MSMAITTATATANGRWSFTTLRSALPSVGSEICTRTRVSFPLSNARVSRRTCSKPIASFS 60

Query: 61  GLCPLNPLISTGLADYNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLISTG ADYNGFEHNF+IVD+G R FAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISTGSADYNGFEHNFEIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180
           QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR
Sbjct: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180

Query: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 209
           YGERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 210

[Close]

BLAST of Clc10G22420 vs. ExPASy TrEMBL
Match: A0A6J1DXR7 (50S ribosomal protein L17, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111024059 PE=3 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 4.2e-98
Identity = 182/208 (87.50%), Postives = 192/208 (92.31%), Query Frame = 0


Query: 1   MAMAITTATANGRWSFTTLRSALPSVGSEIFTPTRVSFPLSNVRVNCRTCSKPIATFSGL 60
           MAMA TTA  N RWS T LR+ALPSVG EI TP RVSFP +  RV+CRTCSKPIA+FSGL
Sbjct: 1   MAMAFTTAATNSRWSLTALRAALPSVGVEIHTPARVSFPSATGRVSCRTCSKPIASFSGL 60

Query: 61  CPLNPLISTGLADYNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQL 120
           CPLNPLISTGL+D++ FEHNF IVDSG R+FAMRHGKRVPKLNRPPDQRRALLRGLTTQL
Sbjct: 61  CPLNPLISTGLSDFDSFEHNFTIVDSGCRYFAMRHGKRVPKLNRPPDQRRALLRGLTTQL 120

Query: 121 LKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYG 180
           LKHGRIKTTR RASAMRKYVDKMITLAK+GSLHKRRQALGF+YEKQIVHALFAEVQDRYG
Sbjct: 121 LKHGRIKTTRARASAMRKYVDKMITLAKEGSLHKRRQALGFVYEKQIVHALFAEVQDRYG 180

Query: 181 ERNGGYTRIIRTLPRRGDNAPMAYIELV 209
           ERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 181 ERNGGYTRIIRTLPRRGDNAPMAYIELV 208

[Close]

BLAST of Clc10G22420 vs. ExPASy TrEMBL
Match: A0A0A0LF27 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G727940 PE=3 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 3.1e-93
Identity = 176/196 (89.80%), Postives = 181/196 (92.35%), Query Frame = 0


Query: 208 VFPNGSSSSRSDATETVLTVWKKSMLLSCEGFTVFNGDGNLVYRVDNYLAGNKGEILLMD 267
           VFPNG SSS SDA ETVLTVWKKSMLL+CEGFTVFN +GNLVYRVDNYLAGNKGEILLMD
Sbjct: 4   VFPNGPSSSCSDAIETVLTVWKKSMLLNCEGFTVFNAEGNLVYRVDNYLAGNKGEILLMD 63

Query: 268 AAGNPLFTIRRKRLSLADSWVVYEGETGVNPRFCARKQMNLLKSKCLARVVE------AM 327
           AAGNPLFTIRRKRLSLADSWVVYEGETG NPRF ARKQMNLLKSKCLARVVE        
Sbjct: 64  AAGNPLFTIRRKRLSLADSWVVYEGETGANPRFSARKQMNLLKSKCLARVVELAGSWSGK 123

Query: 328 GMGVYEIEGCYGKRCCAVYDEKRRIVAEIKRKEAAGGLSFGTDVFRLIVQPQIDTTLAMA 387
           GM VYEIEGCYGKRCCAVYDEKRRIVAEIKRKEAAGGLSFGTDVFRL+VQPQIDTT+AMA
Sbjct: 124 GMSVYEIEGCYGKRCCAVYDEKRRIVAEIKRKEAAGGLSFGTDVFRLVVQPQIDTTVAMA 183

Query: 388 LLVLLDQMFGSSSTTP 398
           LL+LLDQMFGSSSTTP
Sbjct: 184 LLILLDQMFGSSSTTP 199

[Close]

BLAST of Clc10G22420 vs. ExPASy TrEMBL
Match: A0A6J1I1G7 (50S ribosomal protein L17, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111470028 PE=3 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 4.5e-92
Identity = 178/210 (84.76%), Postives = 191/210 (90.95%), Query Frame = 0


Query: 1   MAMAIT--TATANGRWSFTTLRSALPSVGSEIFTPTRVSFPLSNVRVNCRTCSKPIATFS 60
           MAMAIT  TATAN RWSF+++RSALPSV   + TP+RVSFP SN RV+ RTCSK IA+FS
Sbjct: 1   MAMAITTATATANSRWSFSSMRSALPSVEVGVRTPSRVSFPSSNGRVSGRTCSKQIASFS 60

Query: 61  GLCPLNPLISTGLADYNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLIS G +DYN FE NF IVD+G R FAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISIGSSDYNSFEQNFTIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180
           QLLKHGRIKTTR RASA+RKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEV+DR
Sbjct: 121 QLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVKDR 180

Query: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 209
           YGERNGGYTRI+RTLPRRGDNAPMA+IELV
Sbjct: 181 YGERNGGYTRILRTLPRRGDNAPMAFIELV 210

[Close]

BLAST of Clc10G22420 vs. TAIR 10
Match: AT3G54210.1 (Ribosomal protein L17 family protein )

HSP 1 Score: 287.0 bits (733), Expect = 2.4e-77
Identity = 151/208 (72.60%), Postives = 171/208 (82.21%), Query Frame = 0


Query: 1   MAMAITTATANGRWSFTTLRSALPSVGSEIFTPTRVSFPLSNVRVNCRTCSKPIATFSGL 60
           MAMA  T + +  WS ++L+SALPS  S +  P+  S     +R+   + S P  +FSGL
Sbjct: 7   MAMATPTDSVSRVWSMSSLKSALPSTAS-LRLPSSSSRRPVTLRLPISSPSLP--SFSGL 66

Query: 61  CPLNPLISTGLADYNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQL 120
            P+NPL+S GL D+  FE+ FKIVD G R +AMRHG+RVPKLNRPPDQR+ALLRGLTTQL
Sbjct: 67  SPVNPLLSIGLPDWQSFENGFKIVDGGGRIYAMRHGRRVPKLNRPPDQRKALLRGLTTQL 126

Query: 121 LKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYG 180
           LKHGRIKTTR RASAMRK+VDKMITLAKDGSLHKRRQALG+IYEKQIVHALFAEV DRYG
Sbjct: 127 LKHGRIKTTRARASAMRKFVDKMITLAKDGSLHKRRQALGYIYEKQIVHALFAEVPDRYG 186

Query: 181 ERNGGYTRIIRTLPRRGDNAPMAYIELV 209
           ERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 187 ERNGGYTRIIRTLPRRGDNAPMAYIELV 211

[Close]

BLAST of Clc10G22420 vs. TAIR 10
Match: AT2G38640.1 (Protein of unknown function (DUF567) )

HSP 1 Score: 188.3 bits (477), Expect = 1.2e-47
Identity = 96/196 (48.98%), Postives = 136/196 (69.39%), Query Frame = 0


Query: 202 MAYIELVFPNGSSSSRSDA-TETVLTVWKKSMLLSCEGFTVFNGDGNLVYRVDNYLAGNK 261
           M  +   FP+    S  D+    VLTVWKKS+L +C+GFTV+N +G LV+RVDNY+   +
Sbjct: 1   MTKVHPKFPSTCEESLCDSKAAVVLTVWKKSLLFNCDGFTVYNANGELVFRVDNYMNCPR 60

Query: 262 GEILLMDAAGNPLFTIRRKRLSLADSWVVYEGETGVNPRFCARKQMNLLKSKCLARVVEA 321
             I+LMDA+G PL +IRRK+LSL D W+VY+GET  +P F ARK ++++ ++     V A
Sbjct: 61  DNIVLMDASGFPLLSIRRKKLSLGDCWMVYDGETERDPIFTARKNVSIISNRKSLAWVSA 120

Query: 322 MGMGVYEIEGCYGKRCCAVYDEKR--RIVAEIKRKEAA-GGLSFGTDVFRLIVQPQIDTT 381
               +YEIEG YG+R C + DE+R  +  AEIKRKE   GG++FG DV++LIV+ +++  
Sbjct: 121 KKTVLYEIEGSYGQRSCKILDERRNKKKTAEIKRKETVIGGVAFGKDVYKLIVESEMEPR 180

Query: 382 LAMALLVLLDQMFGSS 394
           +AMAL ++LDQMF SS
Sbjct: 181 VAMALTIILDQMFRSS 196

[Close]

BLAST of Clc10G22420 vs. TAIR 10
Match: AT5G41590.1 (Protein of unknown function (DUF567) )

HSP 1 Score: 139.8 bits (351), Expect = 4.7e-33
Identity = 88/184 (47.83%), Postives = 114/184 (61.96%), Query Frame = 0


Query: 223 TVLTVWKKSMLLSCEGFTVFNGDGNLVYRVDNYLAGNKGEILLMDAAGNPLFTIRR-KRL 282
           T LTVW+KS+L+SCEGFTV + +G+L+YRVDNY      E++LMD  GN L  + R K++
Sbjct: 37  TTLTVWRKSLLVSCEGFTVIDSNGDLIYRVDNYARTRPEELILMDKDGNSLLLMHRTKKI 96

Query: 283 SLADSWVVYE-----GETGVN--PRFCARK--QMNLL--KSKCLARVVEAM--GMGVYEI 342
           +L DSW +YE     GET +   P +  RK  +MN+L  KS  LA V          Y I
Sbjct: 97  TLVDSWGIYEANDTKGETKIPKCPTWYMRKNLKMNILSTKSDILAYVYSGSFDKKNSYII 156

Query: 343 EGCYG-KRCCAVYDEKRRIVAEIKRKEA-AGGLSFGTDVFRLIVQPQIDTTLAMALLVLL 391
           +G Y  K C  V+    + V EIKRKE    G+ FG+DVF L+V P  DT LAMAL++LL
Sbjct: 157 KGSYRCKSCKIVHVPLNKTVVEIKRKEVRTKGVRFGSDVFDLVVNPGFDTGLAMALVLLL 216

[Close]

BLAST of Clc10G22420 vs. TAIR 10
Match: AT1G80120.1 (Protein of unknown function (DUF567) )

HSP 1 Score: 116.7 bits (291), Expect = 4.3e-26
Identity = 74/177 (41.81%), Postives = 101/177 (57.06%), Query Frame = 0


Query: 222 ETVLTVWKKSMLLSCEGFTVFNGDGNLVYRVDNYLAGN---KGEILLMDAAGNPLFTIRR 281
           E  LTV K S+  + +GFTV++  G+LV+RVD+Y   N     E++LMDA G  L T+RR
Sbjct: 16  ERSLTVRKTSLFFAGDGFTVYDCKGSLVFRVDSYGGPNTRDTDEVVLMDAHGRCLLTLRR 75

Query: 282 KRLSLADSWVVYEGE--TGVNPRFCARKQMNLLKSKCLARVVEAMGMGVYEIEGCYGKRC 341
           KR SL   W  Y GE   G  P F  R+   + ++     V        Y IEG +G R 
Sbjct: 76  KRPSLRRRWEGYLGERSDGQKPIFGVRRSSIIGRNSVTVEVYGDYQCSEYLIEGSFGARN 135

Query: 342 CAVYD-EKRRIVAEIKRK-EAAGGLSFGTDVFRLIVQPQIDTTLAMALLVLLDQMFG 392
           C V + E RR VAEI+RK +A+  +  G DVF L V+P  D   AM L+++LDQ++G
Sbjct: 136 CTVVEAETRRKVAEIRRKVDASTNVMLGKDVFSLNVKPGFDGAFAMGLVLVLDQIYG 192

[Close]

BLAST of Clc10G22420 vs. TAIR 10
Match: AT3G15810.1 (Protein of unknown function (DUF567) )

HSP 1 Score: 110.2 bits (274), Expect = 4.0e-24
Identity = 67/173 (38.73%), Postives = 100/173 (57.80%), Query Frame = 0


Query: 225 LTVWKKSMLLSCEGFTVFNGDGNLVYRVDNYLAGNK--GEILLMDAAGNPLFTIRRKRLS 284
           LTV K S+  + +GF  ++  G++++RVD+Y    +   EI+LMDA G  L T++RKR +
Sbjct: 33  LTVCKTSLFYTGDGFAAYDCRGDIIFRVDSYGPDTRDNDEIVLMDATGKCLLTVKRKRPT 92

Query: 285 LADSWVVYEGE--TGVNPRFCARKQMNLLKSKCLARVVEAMGMG-VYEIEGCYGKRCCAV 344
           L   W  + GE   G  P F  R+  + +  +C   V    G G  Y I+G + +R C +
Sbjct: 93  LHQRWEGFLGERSEGQKPIFSVRR--SSIIGRCTMEVEVYDGTGEEYIIDGDFSQRSCLI 152

Query: 345 YDEKRRIVAEIKRK-EAAGGLSFGTDVFRLIVQPQIDTTLAMALLVLLDQMFG 392
           YD K+  VAEIKRK +A+  +  G DVF L ++P  D   AM L+V+LDQ+ G
Sbjct: 153 YDTKKCTVAEIKRKVDASTNVMLGRDVFTLEIKPGFDGAFAMGLVVVLDQING 203

The following BLAST results are available for this feature:

BLAST of Clc10G22420 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906261.1	1.2e-107	97.12	50S ribosomal protein L17, chloroplastic [Benincasa hispida]	[more]
XP_008442307.1	8.1e-104	94.71	PREDICTED: 50S ribosomal protein L17 [Cucumis melo]	[more]
XP_004137669.1	2.0e-102	93.33	50S ribosomal protein L17, chloroplastic [Cucumis sativus] >KGN58675.1 hypotheti...	[more]
XP_022157331.1	8.7e-98	87.50	50S ribosomal protein L17, chloroplastic [Momordica charantia]	[more]
XP_038905122.1	4.0e-95	93.19	protein LURP-one-related 8 [Benincasa hispida]	[more]

BLAST of Clc10G22420 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M385	3.3e-76	72.60	50S ribosomal protein L17, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1...	[more]
O80363	1.7e-72	69.12	50S ribosomal protein L17, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL17 P...	[more]
P82194	2.0e-57	85.71	50S ribosomal protein L17, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL17 P...	[more]
Q9ZVI6	1.6e-46	48.98	Protein LURP-one-related 8 OS=Arabidopsis thaliana OX=3702 GN=At2g38640 PE=2 SV=...	[more]
B1XJI3	2.3e-40	68.10	50S ribosomal protein L17 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / P...	[more]

BLAST of Clc10G22420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B652	3.9e-104	94.71	50S ribosomal protein L17 OS=Cucumis melo OX=3656 GN=LOC103486218 PE=3 SV=1	[more]
A0A0A0L9N9	9.7e-103	93.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G727930 PE=3 SV=1	[more]
A0A6J1DXR7	4.2e-98	87.50	50S ribosomal protein L17, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A0A0LF27	3.1e-93	89.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G727940 PE=3 SV=1	[more]
A0A6J1I1G7	4.5e-92	84.76	50S ribosomal protein L17, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]

BLAST of Clc10G22420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G54210.1	2.4e-77	72.60	Ribosomal protein L17 family protein	[more]
AT2G38640.1	1.2e-47	48.98	Protein of unknown function (DUF567)	[more]
AT5G41590.1	4.7e-33	47.83	Protein of unknown function (DUF567)	[more]
AT1G80120.1	4.3e-26	41.81	Protein of unknown function (DUF567)	[more]
AT3G15810.1	4.0e-24	38.73	Protein of unknown function (DUF567)	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038595	LURP-one-related superfamily	GENE3D	2.40.160.200		coord: 218..394 e-value: 8.9E-53 score: 180.7
IPR000456	Ribosomal protein L17	PFAM	PF01196	Ribosomal_L17	coord: 112..208 e-value: 6.6E-34 score: 116.8
IPR000456	Ribosomal protein L17	TIGRFAM	TIGR00059	TIGR00059	coord: 99..208 e-value: 2.8E-42 score: 141.6
IPR000456	Ribosomal protein L17	PANTHER	PTHR14413	RIBOSOMAL PROTEIN L17	coord: 46..208
IPR000456	Ribosomal protein L17	HAMAP	MF_01368	Ribosomal_L17	coord: 97..208 score: 26.132162
IPR036373	Ribosomal protein L17 superfamily	GENE3D	3.90.1030.10	Ribosomal protein L17	coord: 83..208 e-value: 8.4E-50 score: 170.0
IPR036373	Ribosomal protein L17 superfamily	SUPERFAMILY	64263	Prokaryotic ribosomal protein L17	coord: 93..208
IPR007612	LURP-one-related	PFAM	PF04525	LOR	coord: 221..384 e-value: 2.0E-47 score: 161.2
None	No IPR available	PANTHER	PTHR14413:SF23	SUBFAMILY NOT NAMED	coord: 46..208
IPR025659	Tubby-like, C-terminal	SUPERFAMILY	54518	Tubby C-terminal domain-like	coord: 220..390

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G22420.2	Clc10G22420.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome