Clc10G22000 (gene) Watermelon (cordophanus) v2

Overview
NameClc10G22000
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionSel1-like protein
LocationClcChr10: 35078426 .. 35080793 (+)
RNA-Seq ExpressionClc10G22000
SyntenyClc10G22000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGTTAGCGGAGGTACTGAGGGCTTGAATCGCGTTCCTTTATCAGAAGTTGTTTCTGATTGCGTCAAAAGATGGTTTAAGGACACTTTGAAGGAGGCCAAAGCCGGCGATATCAACATGCAGGTCTTGGTGGGTCAAATGTATTATAGCGGTTATGGGGTTCCTCGAGATGCTCAGAAGGTCAATTTTCTTCCCTATCAATTTATTAACTTCCTATTGCTTTATTAATTCCTCCAAAAATCATGCCTAATTTTCTTCACTTTTCGAAATTCTTGCGCTTATATAGATGTATGTGGGTGTTATTGCTCAACCGTGTGTATCGTATATGTTGCAAATTCTGTTATGTTTCGCCTAAAAATAGTTCTCAGTTTTCTCTGTGGTTTGCGTTTTTTTTTTTTTTTTTTTTTTTTAATTTCTCCCTTTGTTGTGAATTTGAGGAGATTGGAACATTTCTTAATGTCTTAAGATTATTAATTGTTCGAGAGTTGGCTTAATGGAATTTTTATAGTTTATTTACCATTGATTTTAGGGAAGAATTTGGATGACAAAAGCATCAAGAAGTCGATCGTCGGTCTGGAAAGTTAGTGATAAACATCCAGGTTGATTGCCAGAATATTAATCTCTTATTTGTTAATGTCTTTTCTTAATCTTAATTCTTATCCATCCTCTATAAACATCTCTTGCTAATTTTGTAAGTTAACATTGATTGTGATAGGCTATAATGCTAGTGATTCAGATTCAGATGAATTGACTCGTGATTCTTAACTGCACCAGTGTTGCTGATTCCTCTATGTCATGTCAAAACAACCACTGGTATCTCCTTGGCAATTTAACTGGTTATTTTTTGTCTTTATGTGTGACATCAATTACTGTTTCTTGCATATGTGAAAATGTACTAGTAGAAGAGAGAAAGTGGGTAAAATATGACATTTTTGCTCATTAAAACAGGTGCTTCAGGCTTCAGCTTTAAGTGATTAAAGTTTTACAACTCTGTTGCTCCGTTTCCATCATATATAAACACTTCAAACAACTCCCTCTGCCTTTGTGGCTGTTTCCGTCTAAACCCTTGGATGCACGAATCATAATTTTTAGTTTTTCTTTCCTACATTCAGTTATCGTTCCAGCCTCCTTGGATGCTTTTGGGGGACTTTTGATGACTTTGAGTATTAAGTTTGTTAAAGTCAATAGTTGTAGGTCATAAACTCCTGCGATAAAAAGATCATAACCTTAGAGCTAGGGGGCGTTTGGGGCGTTGAGTTAGTTATTATTATGATTTGTAGGCTATGATAGTTTGTGGTACAAGCTAAATAGTCTGTGTTCGAGGTGCAGACTATTCTAGTTTAGGTAGAATTGTAAATACGGTAAGAAAGAGGGAGAGTGAAAAAAGGTAAGAAATAGTAAACATTGTAACAAAGCGAAATTTTAAATAGTATTACATTAAATAATTGTAGGTTATAAATAGTTGTAAACACCACTATTATATCTAGTGCCTCAAACATGGAGACCAATATCAAGTTGGGGGCCAAACAGCCCCTTAAAGGTTACATGTCACTTGTTGTTCAAGATGCTAGACATCCTTTGGGTTTGCATGTTCATGTTCGTGTTATGCAAGTCTTACTGAAGATCCTGAAGGATGGTTCTTTCTTGTTCTTTTGTTTTTGTTTTTCTTCTTGTTTTTGTTTTTTTGGAAAAGGAAATTACACTTGTGCTCTAGTCCCTTTGGCTGTGAAATTTTGGTTTGCTTCTCATGGAAAATGATTGAAGGGCTCACACATAATTTTTTTTTTTCTTCTTATAATTAGCAATTCTTTATTATTTCAAGATCTTTGGTTTCTGTTTAGTTAAATCCTTATTTGTCGTGGGATGAGATTCGATTATCTTATAGACCTATACTATACTTAAAATCTAGTTTCAGCTTGATGGCTGGCAGGATGATGTTTTATCCTAGTACGTTTTCATGTCTTTTTACCAATCAATTTGTTGTTTCTGAGACAACTTAGCCGTATGATGAAAGCATTGCTAGGATTTAAAATGCTGCCGTCCTTCGAATTTGCTAATTATAGATTATGATTTTCGGAATGTGCAGTTAGTGGAAACTGTGCTATTGTTGATTCCAAGGATTAAATTGTTGACATGATAGCAAGATTTTAAATTAACAGTTATTTGTTTTTACTTGGATTAAGTTGTAGATCTTGCTAGTCATATTTATATTCATGTTGGAATTAATGGAGGATATTTTTTCTGGCTGTTTTCAAATATAGCAAAATGGACTAAAATATTTACAAATATAGTAAAATATACTGATAGACAATGATAGACTACTATTGCTATATTTGAAAATATTTTCAGCAAGTTTGCCATTTAA

mRNA sequence

ATGGAGGTTAGCGGAGGTACTGAGGGCTTGAATCGCGTTCCTTTATCAGAAGTTGTTTCTGATTGCGTCAAAAGATGGTTTAAGGACACTTTGAAGGAGGCCAAAGCCGGCGATATCAACATGCAGGTCTTGGTGGGTCAAATGTATTATAGCGGTTATGGGGTTCCTCGAGATGCTCAGAAGGGAAGAATTTGGATGACAAAAGCATCAAGAAGTCGATCGTCGGTCTGGAAAGTTAGTGATAAACATCCAGGCTATAATGCTAGTGATTCAGATTCAGATGAATTGACTCGTGATTCTTAACTGCACCAGTGTTGCTGATTCCTCTATGTCATGTCAAAACAACCACTGGTATCTCCTTGGCAATTTAACTGGTTATTTTTTGTCTTTATGTGTGACATCAATTACTGTTTCTTGCATATGTGAAAATGTACTAGTAGAAGAGAGAAAGTGGGTAAAATATGACATTTTTGCTCATTAAAACAGGTGCTTCAGGCTTCAGCTTTAAGTGATTAAAGTTTTACAACTCTGTTGCTCCGTTTCCATCATATATAAACACTTCAAACAACTCCCTCTGCCTTTGTGGCTGTTTCCGTCTAAACCCTTGGATGCACGAATCATAATTTTTAGTTTTTCTTTCCTACATTCAGTTATCGTTCCAGCCTCCTTGGATGCTTTTGGGGGACTTTTGATGACTTTGAGTATTAAGTTTGTTAAAGTCAATAGTTGTAGGTCATAAACTCCTGCGATAAAAAGATCATAACCTTAGAGCTAGGGGGCGTTTGGGGCGTTGAGTTAGTTATTATTATGATTTGTAGGCTATGATAGTTTGTGGTACAAGCTAAATAGTCTGTGTTCGAGGTGCAGACTATTCTAGTTTAGGTAGAATTGTAAATACGGTAAGAAAGAGGGAGAGTGAAAAAAGGTAAGAAATAGTAAACATTGTAACAAAGCGAAATTTTAAATAGTATTACATTAAATAATTGTAGGTTATAAATAGTTGTAAACACCACTATTATATCTAGTGCCTCAAACATGGAGACCAATATCAAGTTGGGGGCCAAACAGCCCCTTAAAGGTTACATGTCACTTGTTGTTCAAGATGCTAGACATCCTTTGGGTTTGCATGTTCATGTTCGTGTTATGCAAGTCTTACTGAAGATCCTGAAGGATGGTTCTTTCTTGTTCTTTTGTTTTTGTTTTTCTTCTTGTTTTTGTTTTTTTGGAAAAGGAAATTACACTTGTGCTCTAGTCCCTTTGGCTGTGAAATTTTGGTTTGCTTCTCATGGAAAATGATTGAAGGGCTCACACATAATTTTTTTTTTTCTTCTTATAATTAGCAATTCTTTATTATTTCAAGATCTTTGGTTTCTGTTTAGTTAAATCCTTATTTGTCGTGGGATGAGATTCGATTATCTTATAGACCTATACTATACTTAAAATCTAGTTTCAGCTTGATGGCTGGCAGGATGATGTTTTATCCTAGTACGTTTTCATGTCTTTTTACCAATCAATTTGTTGTTTCTGAGACAACTTAGCCGTATGATGAAAGCATTGCTAGGATTTAAAATGCTGCCGTCCTTCGAATTTGCTAATTATAGATTATGATTTTCGGAATGTGCAGTTAGTGGAAACTGTGCTATTGTTGATTCCAAGGATTAAATTGTTGACATGATAGCAAGATTTTAAATTAACAGTTATTTGTTTTTACTTGGATTAAGTTGTAGATCTTGCTAGTCATATTTATATTCATGTTGGAATTAATGGAGGATATTTTTTCTGGCTGTTTTCAAATATAGCAAAATGGACTAAAATATTTACAAATATAGTAAAATATACTGATAGACAATGATAGACTACTATTGCTATATTTGAAAATATTTTCAGCAAGTTTGCCATTTAA

Coding sequence (CDS)

ATGGAGGTTAGCGGAGGTACTGAGGGCTTGAATCGCGTTCCTTTATCAGAAGTTGTTTCTGATTGCGTCAAAAGATGGTTTAAGGACACTTTGAAGGAGGCCAAAGCCGGCGATATCAACATGCAGGTCTTGGTGGGTCAAATGTATTATAGCGGTTATGGGGTTCCTCGAGATGCTCAGAAGGGAAGAATTTGGATGACAAAAGCATCAAGAAGTCGATCGTCGGTCTGGAAAGTTAGTGATAAACATCCAGGCTATAATGCTAGTGATTCAGATTCAGATGAATTGACTCGTGATTCTTAA

Protein sequence

MEVSGGTEGLNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQKGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS
Homology
[Close]
BLAST of Clc10G22000 vs. NCBI nr
Match: XP_008442362.1 (PREDICTED: uncharacterized protein LOC103486254 [Cucumis melo] >XP_008442363.1 PREDICTED: uncharacterized protein LOC103486254 [Cucumis melo] >XP_008442364.1 PREDICTED: uncharacterized protein LOC103486254 [Cucumis melo] >XP_038903442.1 uncharacterized protein LOC120090028 [Benincasa hispida] >XP_038903443.1 uncharacterized protein LOC120090028 [Benincasa hispida] >XP_038903444.1 uncharacterized protein LOC120090028 [Benincasa hispida] >KAA0044203.1 Sel1-like protein [Cucumis melo var. makuwa] >TYK24929.1 Sel1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 206.5 bits (524), Expect = 1.1e-49
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MEVSGGTEGLNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ 60
           ME+SGGTEGLNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ
Sbjct: 1   MEISGGTEGLNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ 60

Query: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 101
           KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS
Sbjct: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 100

[Close]
BLAST of Clc10G22000 vs. NCBI nr
Match: XP_022157335.1 (uncharacterized protein LOC111024062 [Momordica charantia])

HSP 1 Score: 203.4 bits (516), Expect = 9.3e-49
Identity = 97/100 (97.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MEVSGGTEGLNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ 60
           ME+SGGTEGL+RVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ
Sbjct: 1   MEISGGTEGLSRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ 60

Query: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 101
           KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSD+LTRDS
Sbjct: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTRDS 100

[Close]
BLAST of Clc10G22000 vs. NCBI nr
Match: XP_022934323.1 (uncharacterized protein LOC111441521 [Cucurbita moschata] >XP_022934324.1 uncharacterized protein LOC111441521 [Cucurbita moschata] >XP_022983617.1 uncharacterized protein LOC111482171 [Cucurbita maxima] >XP_022983618.1 uncharacterized protein LOC111482171 [Cucurbita maxima] >XP_023526158.1 uncharacterized protein LOC111789719 [Cucurbita pepo subsp. pepo] >XP_023526159.1 uncharacterized protein LOC111789719 [Cucurbita pepo subsp. pepo] >KAG6580446.1 hypothetical protein SDJN03_20448, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017199.1 hypothetical protein SDJN02_19061, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 202.6 bits (514), Expect = 1.6e-48
Identity = 96/100 (96.00%), Postives = 99/100 (99.00%), Query Frame = 0 

Query: 1   MEVSGGTEGLNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ 60
           ME+SGGTEGL+RVPLSEVVSDC KRWFKDTLKEAKAGDINMQVLVGQMYYSGYG+PRDAQ
Sbjct: 1   MEISGGTEGLSRVPLSEVVSDCAKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGIPRDAQ 60

Query: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 101
           KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS
Sbjct: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 100

[Close]
BLAST of Clc10G22000 vs. NCBI nr
Match: XP_011651845.1 (uncharacterized protein LOC101206121 [Cucumis sativus] >KGN58719.1 hypothetical protein Csa_001055 [Cucumis sativus])

HSP 1 Score: 201.8 bits (512), Expect = 2.7e-48
Identity = 97/100 (97.00%), Postives = 98/100 (98.00%), Query Frame = 0 

Query: 1   MEVSGGTEGLNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ 60
           ME+SG TE LNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ
Sbjct: 1   MEISGATEALNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ 60

Query: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 101
           KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS
Sbjct: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 100

[Close]
BLAST of Clc10G22000 vs. NCBI nr
Match: XP_022971526.1 (uncharacterized protein LOC111470221 [Cucurbita maxima] >XP_022971527.1 uncharacterized protein LOC111470221 [Cucurbita maxima] >XP_022971528.1 uncharacterized protein LOC111470221 [Cucurbita maxima])

HSP 1 Score: 195.3 bits (495), Expect = 2.5e-46
Identity = 92/100 (92.00%), Postives = 96/100 (96.00%), Query Frame = 0 

Query: 1   MEVSGGTEGLNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ 60
           ME+SGGTE LNRVPLSEVVSDCVKRWFKDTL EAK GDINMQVLVGQMYYSGYG+PRDAQ
Sbjct: 1   MEISGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQ 60

Query: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 101
           KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSD++T DS
Sbjct: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDVTHDS 100

[Close]
BLAST of Clc10G22000 vs. ExPASy TrEMBL
Match: A0A1S3B5I4 (uncharacterized protein LOC103486254 OS=Cucumis melo OX=3656 GN=LOC103486254 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 5.3e-50
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MEVSGGTEGLNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ 60
           ME+SGGTEGLNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ
Sbjct: 1   MEISGGTEGLNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ 60

Query: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 101
           KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS
Sbjct: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 100

[Close]
BLAST of Clc10G22000 vs. ExPASy TrEMBL
Match: A0A5D3DNP0 (Sel1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00440 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 5.3e-50
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MEVSGGTEGLNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ 60
           ME+SGGTEGLNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ
Sbjct: 1   MEISGGTEGLNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ 60

Query: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 101
           KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS
Sbjct: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 100

[Close]
BLAST of Clc10G22000 vs. ExPASy TrEMBL
Match: A0A6J1DSS4 (uncharacterized protein LOC111024062 OS=Momordica charantia OX=3673 GN=LOC111024062 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 4.5e-49
Identity = 97/100 (97.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MEVSGGTEGLNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ 60
           ME+SGGTEGL+RVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ
Sbjct: 1   MEISGGTEGLSRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ 60

Query: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 101
           KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSD+LTRDS
Sbjct: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTRDS 100

[Close]
BLAST of Clc10G22000 vs. ExPASy TrEMBL
Match: A0A6J1J881 (uncharacterized protein LOC111482171 OS=Cucurbita maxima OX=3661 GN=LOC111482171 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 7.7e-49
Identity = 96/100 (96.00%), Postives = 99/100 (99.00%), Query Frame = 0 

Query: 1   MEVSGGTEGLNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ 60
           ME+SGGTEGL+RVPLSEVVSDC KRWFKDTLKEAKAGDINMQVLVGQMYYSGYG+PRDAQ
Sbjct: 1   MEISGGTEGLSRVPLSEVVSDCAKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGIPRDAQ 60

Query: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 101
           KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS
Sbjct: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 100

[Close]
BLAST of Clc10G22000 vs. ExPASy TrEMBL
Match: A0A6J1F7C2 (uncharacterized protein LOC111441521 OS=Cucurbita moschata OX=3662 GN=LOC111441521 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 7.7e-49
Identity = 96/100 (96.00%), Postives = 99/100 (99.00%), Query Frame = 0 

Query: 1   MEVSGGTEGLNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ 60
           ME+SGGTEGL+RVPLSEVVSDC KRWFKDTLKEAKAGDINMQVLVGQMYYSGYG+PRDAQ
Sbjct: 1   MEISGGTEGLSRVPLSEVVSDCAKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGIPRDAQ 60

Query: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 101
           KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS
Sbjct: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 100

[Close]
BLAST of Clc10G22000 vs. TAIR 10
Match: AT2G38450.1 (CONTAINS InterPro DOMAIN/s: Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G05360.1); Has 88 Blast hits to 88 proteins in 25 species: Archae - 0; Bacteria - 16; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 147.5 bits (371), Expect = 5.7e-36
Identity = 68/82 (82.93%), Postives = 76/82 (92.68%), Query Frame = 0 

Query: 13  VPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQKGRIWMTKASRS 72
           VPLS VVSDC KRWFKDTL+EAKAG+I MQVL+GQMYYSGYGVP+DA+KGR+W+TKASR 
Sbjct: 55  VPLSSVVSDCAKRWFKDTLEEAKAGNITMQVLLGQMYYSGYGVPKDARKGRLWITKASRV 114

Query: 73  RSSVWKVSDKHPGYNASDSDSD 95
           RSSVWKV DK PGYNASDSDS+
Sbjct: 115 RSSVWKVIDKRPGYNASDSDSE 136

[Close]
BLAST of Clc10G22000 vs. TAIR 10
Match: AT5G05360.1 (unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38450.1); Has 84 Blast hits to 84 proteins in 24 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). )

HSP 1 Score: 146.4 bits (368), Expect = 1.3e-35
Identity = 64/92 (69.57%), Postives = 81/92 (88.04%), Query Frame = 0 

Query: 4   SGGTEGLNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQKGR 63
           + G++ +NRVPL++VV DCV+RWF+DTLKEAK+GD+ MQVLVGQMY SGYG+P+D  KGR
Sbjct: 69  ASGSDPINRVPLAQVVEDCVRRWFQDTLKEAKSGDVGMQVLVGQMYCSGYGIPKDENKGR 128

Query: 64  IWMTKASRSRSSVWKVSDKHPGYNASDSDSDE 96
            W+ KASR+RSS W+VSDK PGYNASDSDS++
Sbjct: 129 AWINKASRTRSSAWQVSDKPPGYNASDSDSND 160

[Close]
BLAST of Clc10G22000 vs. TAIR 10
Match: AT5G05360.2 (unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38450.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 133.3 bits (334), Expect = 1.1e-31
Identity = 57/84 (67.86%), Postives = 72/84 (85.71%), Query Frame = 0 

Query: 4   SGGTEGLNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQKGR 63
           + G++ +NRVPL++VV DCV+RWF+DTLKEAK+GD+ MQVLVGQMY SGYG+P+D  KGR
Sbjct: 69  ASGSDPINRVPLAQVVEDCVRRWFQDTLKEAKSGDVGMQVLVGQMYCSGYGIPKDENKGR 128

Query: 64  IWMTKASRSRSSVWKVSDKHPGYN 88
            W+ KASR+RSS W+VSDK PG N
Sbjct: 129 AWINKASRTRSSAWQVSDKPPGNN 152

The following BLAST results are available for this feature:
BLAST of Clc10G22000 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008442362.11.1e-4999.00PREDICTED: uncharacterized protein LOC103486254 [Cucumis melo] >XP_008442363.1 P... [more]
XP_022157335.19.3e-4997.00uncharacterized protein LOC111024062 [Momordica charantia][more]
XP_022934323.11.6e-4896.00uncharacterized protein LOC111441521 [Cucurbita moschata] >XP_022934324.1 unchar... [more]
XP_011651845.12.7e-4897.00uncharacterized protein LOC101206121 [Cucumis sativus] >KGN58719.1 hypothetical ... [more]
XP_022971526.12.5e-4692.00uncharacterized protein LOC111470221 [Cucurbita maxima] >XP_022971527.1 uncharac... [more]
BLAST of Clc10G22000 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc10G22000 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3B5I45.3e-5099.00uncharacterized protein LOC103486254 OS=Cucumis melo OX=3656 GN=LOC103486254 PE=... [more]
A0A5D3DNP05.3e-5099.00Sel1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00... [more]
A0A6J1DSS44.5e-4997.00uncharacterized protein LOC111024062 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6J1J8817.7e-4996.00uncharacterized protein LOC111482171 OS=Cucurbita maxima OX=3661 GN=LOC111482171... [more]
A0A6J1F7C27.7e-4996.00uncharacterized protein LOC111441521 OS=Cucurbita moschata OX=3662 GN=LOC1114415... [more]
BLAST of Clc10G22000 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G38450.15.7e-3682.93CONTAINS InterPro DOMAIN/s: Sel1-like (InterPro:IPR006597); BEST Arabidopsis tha... [more]
AT5G05360.11.3e-3569.57unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplas... [more]
AT5G05360.21.1e-3167.86unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplas... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006597Sel1-like repeatSMARTSM00671sel1coord: 39..74
e-value: 6.3E-4
score: 29.0
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 20..83
e-value: 1.4E-7
score: 33.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..100
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..100
NoneNo IPR availablePANTHERPTHR36792:SF6TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATEDcoord: 1..100
NoneNo IPR availablePANTHERPTHR36792EXPRESSED PROTEINcoord: 1..100
NoneNo IPR availableSUPERFAMILY81901HCP-likecoord: 31..70

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc10G22000.1Clc10G22000.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding