Clc10G21795 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G21795
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Phycobilisome rod-core linker polypeptide CpcG2 like
Location	ClcChr10: 34947619 .. 34950156 (+)
RNA-Seq Expression	Clc10G21795
Synteny	Clc10G21795

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTTAAGACTCTTGCGGCTTTCCTACAACCACGCACATTATAAATTAAGGCGAGAAGCCCGGCAGCCGCGTAGAGAGCTGGGTTGGCTTGCGATCGAGGAAAATTAGGGCAACTAACCATTGTCATCAGCGACGATATTGTTTACGTAAACATTTCCTAACTTCATCTGTTTCGATCGACTTTCCTTGGTTGAAAATCTGTACGTCTGCGTTTTCTTCCATCGATTAAAGGGTTTTGGTTATGCTTTTTGCTTCTTTACTTTTTACGGGTTCTTGCAGTCTAGATTGTTTTGGTTCCTAGAAGGAAGGTTAAACTAGCTTCTGTAAACTTCTTCTATCGTTTCAGGCATCTAAATCCTTATTGATTTGTTTTAATTTTTGGAAACGAGCATGGCGGGTGGAAATTTCATGCACAGAGTAGTGTCATACCTCGTGAATGAGGTTCTCGTCAACAGTCTTGCGAACAGGTAATTGAATGATAAGGCTTTATTGCATGAGAGGATTTTTTTTTTCCTTCGCTTTGAATTGGACAATGATGATGTATGTATGAAGAAGCTTCATCTCTGGCCGGAGGGATCGATTAGTTCCTATTTGGCTCGTTCCATTGAAGCAAAATATTGTCAGATTTTCTTTCATGTTTATCTGCTGCCTTAATGGTTGGGTGTGCAGATGAGGAGATCTTGGAAAATTTTGCTCCAGGTCCATTTATTTTTCTTTTATGGAATTGATGTCCCATGTTCTTTTAGTTTTATTAGCTTTAGCGGTTGGTTGATTGTGCGTTGGCGCAGCTTAGGAGGTTTATTAAACTTTTGCTATAGACTTATTTTCTATTTCTTCTATAGAATTAATGGTGCTCTAATGTTTGTTAAATCCATGCTAGAAGCGTAACTTTAGTGGTTGAGTTCGATAAAATTTTATCTTTTGATGCTGTTTTTCATTTGCGTCGTCAGTTCAATTATTTGTATAAGTTGCAACAGTTAGAATACGACTTTGTAGGCCGACAACAATACAAGTCATGAGTGACAGCAAAGCCAAGTTGTATAAAGGTAAGCAGCCCAACTTGCAATAGCAAACGGCCTACTTTTAGCCTCTTTTCCCCTTACCCCCTGTTATCTCCTAAAGCTTGTATAAAAGAAGATGAGGGTACCACTTTCTAGTTCAAATTGAATTTCTATTTGAATAGAGATTGAACCATATTCTTGGGATTACTAATGTAAAATGGAATAAAAGAGTATAACAAAGATTTTAACTTAGGCTTTTTTTTTCCTTCAAGTATTATATCGGTTTGTTATCAGGTTGAGTTTAAGGTACTAGGTAATGGATTTTTGTTACAGAAATTTATTTTTTGGAAGCATGAACTATGCTAAAGTAGCAGGGGAGGAAATATTTATCCAAGGTAAAGGAGAAAGCTCAAAGCTACCCCACCAAAAAAAAAAAAAACGAAGTCTAGAACGCTTACACCTAGTTAGAACCCCACTAACACAACGTGACCCCATAAAACAGAAAAGGCTTTTCAGTAGCCTTTTCAAATATAGTTTAGCGAGGGCATGGAAGAGTTGATGCTTGCCTGATTGTAACCATCAATCACAAAGGGGTTTTTCAAAAAAACAGGGTAAGCCAAGAGCGGTGTTACACCTTGGGGGGGCACATTATATTTTCGGTGAAGACTGATTTGTTAGCCACTAGCTCAAGATTTCAATTTTTGTACTTGATTTTTGGTTGGTTTTTGTGTATTTCTTTGTTCTGTTCAAAATTCTGTGTCAAGCGGCTTCAACTGTTGTTATTTTGTCATCTGCAACAGTGTCACAAACAATTATTCTTTGTTGTCTTCCCCAAGATTGTCTCTTATTCCCTCGTTTGAACAATAGTTCATGCTGACTTGCGTAATGATTGTGGATACTCGTATGATTGTATTGATTATACTTTTAAGAGTTGAGCCTTTTAAACACTCTTTCTCCTGCATATATCTGCTATTAAATCGAAGATGTTCAAGCTTTATGACAACTGAAAAGTCACATTTGTCTGCTTAATACTAACTGTTCATTCTCAAGAAATGATTTCATTCTCATCTTCCATTTTTGCAGCCGTGCATTTCAAAGGTTTGCTGTGAGGACATCAAAGCAAATTGAGGATCTTTCTAACAAGGGTAGAAACTTTACTGTTTTTGCTTCATTGATTTTGATTTTACTTATGGTATTTATTGTTGAGTGGGTTTAACTTATGCTAATAAGATTGGAATTGTCCTGCAGCTGCGCAGAAGAAGCAAGAACTTTCGGAACAAATGAAAGATCTCTCCAAAAATTTTGATGTGAGATGCTTCTTACAACTTAAATCTTTTTATTTTGAATAGGGTAGACGTATCCTCATACCTTATTCGATCTTTTTACAGTCTTTCAAGAACCAATAATTTGGAGTGGAACGTGTCAGTGCAGATTCTCTGAAGATTTGTTTTATAGTCCTTATCTTGTCTATTGAATAATTGTGACAGTAGAATTTGAGGTCTGTTTTTGGTTACCTGGTCACCGTTGCCTGTGATTGA

mRNA sequence

TGTTAAGACTCTTGCGGCTTTCCTACAACCACGCACATTATAAATTAAGGCGAGAAGCCCGGCAGCCGCGTAGAGAGCTGGGTTGGCTTGCGATCGAGGAAAATTAGGGCAACTAACCATTGTCATCAGCGACGATATTGTTTACGTAAACATTTCCTAACTTCATCTGTTTCGATCGACTTTCCTTGGTTGAAAATCTGCATCTAAATCCTTATTGATTTGTTTTAATTTTTGGAAACGAGCATGGCGGGTGGAAATTTCATGCACAGAGTAGTGTCATACCTCGTGAATGAGGTTCTCGTCAACAGTCTTGCGAACAGCCGTGCATTTCAAAGGTTTGCTGTGAGGACATCAAAGCAAATTGAGGATCTTTCTAACAAGGCTGCGCAGAAGAAGCAAGAACTTTCGGAACAAATGAAAGATCTCTCCAAAAATTTTGATAATTTGAGGTCTGTTTTTGGTTACCTGGTCACCGTTGCCTGTGATTGA

Coding sequence (CDS)

ATGGCGGGTGGAAATTTCATGCACAGAGTAGTGTCATACCTCGTGAATGAGGTTCTCGTCAACAGTCTTGCGAACAGCCGTGCATTTCAAAGGTTTGCTGTGAGGACATCAAAGCAAATTGAGGATCTTTCTAACAAGGCTGCGCAGAAGAAGCAAGAACTTTCGGAACAAATGAAAGATCTCTCCAAAAATTTTGATAATTTGAGGTCTGTTTTTGGTTACCTGGTCACCGTTGCCTGTGATTGA

Protein sequence

MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDLSNKAAQKKQELSEQMKDLSKNFDNLRSVFGYLVTVACD

Homology

[Close]

BLAST of Clc10G21795 vs. NCBI nr
Match: XP_022935686.1 (uncharacterized protein LOC111442470 [Cucurbita moschata] >KAG6580465.1 hypothetical protein SDJN03_20467, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017215.1 hypothetical protein SDJN02_19077, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 123.2 bits (308), Expect = 1.0e-24
Identity = 63/70 (90.00%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDLSNKAAQKKQELSEQMKD 60
          MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIED+SNKAAQKKQEL+EQ+KD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60

Query: 61 LSKNFDNLRS 71
          LSKNFD+ ++
Sbjct: 61 LSKNFDSFKN 70

[Close]

BLAST of Clc10G21795 vs. NCBI nr
Match: XP_022983627.1 (uncharacterized protein LOC111482182 [Cucurbita maxima])

HSP 1 Score: 121.7 bits (304), Expect = 2.9e-24
Identity = 62/70 (88.57%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDLSNKAAQKKQELSEQMKD 60
          MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIED+SNKAA+KKQEL+EQ+KD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAARKKQELAEQVKD 60

Query: 61 LSKNFDNLRS 71
          LSKNFD+ ++
Sbjct: 61 LSKNFDSFKN 70

[Close]

BLAST of Clc10G21795 vs. NCBI nr
Match: XP_038903248.1 (uncharacterized protein LOC120089892 [Benincasa hispida] >XP_038903249.1 uncharacterized protein LOC120089892 [Benincasa hispida] >XP_038903250.1 uncharacterized protein LOC120089892 [Benincasa hispida] >XP_038903251.1 uncharacterized protein LOC120089892 [Benincasa hispida])

HSP 1 Score: 120.2 bits (300), Expect = 8.4e-24
Identity = 61/70 (87.14%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDLSNKAAQKKQELSEQMKD 60
          MAGGNFMHRVVSYLVNEVLVNSLANSR FQRFAVRTSKQIE++SNKAAQKKQEL+EQ+KD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRTFQRFAVRTSKQIEEISNKAAQKKQELAEQVKD 60

Query: 61 LSKNFDNLRS 71
          LSKNFD+ ++
Sbjct: 61 LSKNFDSFKN 70

[Close]

BLAST of Clc10G21795 vs. NCBI nr
Match: XP_022949523.1 (uncharacterized protein LOC111452848 [Cucurbita moschata] >XP_022971350.1 uncharacterized protein LOC111470102 [Cucurbita maxima] >XP_023539748.1 uncharacterized protein LOC111800336 [Cucurbita pepo subsp. pepo] >KAG6596336.1 hypothetical protein SDJN03_09516, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027888.1 hypothetical protein SDJN02_09065 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 119.8 bits (299), Expect = 1.1e-23
Identity = 61/70 (87.14%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDLSNKAAQKKQELSEQMKD 60
          MAGGNFMHRVVSYLVNEVLVNSLANSR+FQRFAVRTSKQIED+S KAAQKKQEL+EQMKD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKD 60

Query: 61 LSKNFDNLRS 71
          LSKNF++ ++
Sbjct: 61 LSKNFESFKN 70

[Close]

BLAST of Clc10G21795 vs. NCBI nr
Match: XP_023527736.1 (uncharacterized protein LOC111790863 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 119.8 bits (299), Expect = 1.1e-23
Identity = 60/70 (85.71%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDLSNKAAQKKQELSEQMKD 60
          MAGGNFMHRVVSYLVNEV+VNSLANSR FQRFAVRTSKQIED+SNKA+QKKQEL+EQ+KD
Sbjct: 1  MAGGNFMHRVVSYLVNEVIVNSLANSRTFQRFAVRTSKQIEDISNKASQKKQELAEQVKD 60

Query: 61 LSKNFDNLRS 71
          LSKNFD+ ++
Sbjct: 61 LSKNFDSFKN 70

[Close]

BLAST of Clc10G21795 vs. ExPASy TrEMBL
Match: A0A6J1F5E7 (uncharacterized protein LOC111442470 OS=Cucurbita moschata OX=3662 GN=LOC111442470 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.8e-25
Identity = 63/70 (90.00%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDLSNKAAQKKQELSEQMKD 60
          MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIED+SNKAAQKKQEL+EQ+KD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60

Query: 61 LSKNFDNLRS 71
          LSKNFD+ ++
Sbjct: 61 LSKNFDSFKN 70

[Close]

BLAST of Clc10G21795 vs. ExPASy TrEMBL
Match: A0A6J1IZW4 (uncharacterized protein LOC111482182 OS=Cucurbita maxima OX=3661 GN=LOC111482182 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.4e-24
Identity = 62/70 (88.57%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDLSNKAAQKKQELSEQMKD 60
          MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIED+SNKAA+KKQEL+EQ+KD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAARKKQELAEQVKD 60

Query: 61 LSKNFDNLRS 71
          LSKNFD+ ++
Sbjct: 61 LSKNFDSFKN 70

[Close]

BLAST of Clc10G21795 vs. ExPASy TrEMBL
Match: A0A6J1I5H8 (uncharacterized protein LOC111470102 OS=Cucurbita maxima OX=3661 GN=LOC111470102 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 5.3e-24
Identity = 61/70 (87.14%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDLSNKAAQKKQELSEQMKD 60
          MAGGNFMHRVVSYLVNEVLVNSLANSR+FQRFAVRTSKQIED+S KAAQKKQEL+EQMKD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKD 60

Query: 61 LSKNFDNLRS 71
          LSKNF++ ++
Sbjct: 61 LSKNFESFKN 70

[Close]

BLAST of Clc10G21795 vs. ExPASy TrEMBL
Match: A0A6J1GCB5 (uncharacterized protein LOC111452848 OS=Cucurbita moschata OX=3662 GN=LOC111452848 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 5.3e-24
Identity = 61/70 (87.14%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDLSNKAAQKKQELSEQMKD 60
          MAGGNFMHRVVSYLVNEVLVNSLANSR+FQRFAVRTSKQIED+S KAAQKKQEL+EQMKD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKD 60

Query: 61 LSKNFDNLRS 71
          LSKNF++ ++
Sbjct: 61 LSKNFESFKN 70

[Close]

BLAST of Clc10G21795 vs. ExPASy TrEMBL
Match: A0A0A0L9U5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G731020 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.5e-23
Identity = 59/70 (84.29%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDLSNKAAQKKQELSEQMKD 60
          MAGGNF+HRV SYLVNEVLVNSLANSR+FQRFAVRTSKQIED+SNKAAQKKQEL+EQ+KD
Sbjct: 1  MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60

Query: 61 LSKNFDNLRS 71
           SKNFD+ ++
Sbjct: 61 FSKNFDSFKN 70

[Close]

BLAST of Clc10G21795 vs. TAIR 10
Match: AT5G01350.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 81.3 bits (199), Expect = 4.0e-16
Identity = 38/67 (56.72%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 3  GGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDLSNKAAQKKQELSEQMKDLS 62
          GGNF+ RV+SY+ NE +VN LANS AFQRFAVRTSK+IE+LS  AA+ ++++++QM++ +
Sbjct: 4  GGNFIARVISYVANEFIVNGLANSHAFQRFAVRTSKRIENLSKMAAENREKVAQQMEEFA 63

Query: 63 KNFDNLR 70
          KN D+ +
Sbjct: 64 KNIDSTK 70

The following BLAST results are available for this feature:

BLAST of Clc10G21795 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022935686.1	1.0e-24	90.00	uncharacterized protein LOC111442470 [Cucurbita moschata] >KAG6580465.1 hypothet...	[more]
XP_022983627.1	2.9e-24	88.57	uncharacterized protein LOC111482182 [Cucurbita maxima]	[more]
XP_038903248.1	8.4e-24	87.14	uncharacterized protein LOC120089892 [Benincasa hispida] >XP_038903249.1 unchara...	[more]
XP_022949523.1	1.1e-23	87.14	uncharacterized protein LOC111452848 [Cucurbita moschata] >XP_022971350.1 unchar...	[more]
XP_023527736.1	1.1e-23	85.71	uncharacterized protein LOC111790863 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Clc10G21795 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc10G21795 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F5E7	4.8e-25	90.00	uncharacterized protein LOC111442470 OS=Cucurbita moschata OX=3662 GN=LOC1114424...	[more]
A0A6J1IZW4	1.4e-24	88.57	uncharacterized protein LOC111482182 OS=Cucurbita maxima OX=3661 GN=LOC111482182...	[more]
A0A6J1I5H8	5.3e-24	87.14	uncharacterized protein LOC111470102 OS=Cucurbita maxima OX=3661 GN=LOC111470102...	[more]
A0A6J1GCB5	5.3e-24	87.14	uncharacterized protein LOC111452848 OS=Cucurbita moschata OX=3662 GN=LOC1114528...	[more]
A0A0A0L9U5	3.5e-23	84.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G731020 PE=4 SV=1	[more]

BLAST of Clc10G21795 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01350.1	4.0e-16	56.72	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 33..71
None	No IPR available	PANTHER	PTHR34966	OSJNBA0043L24.15 PROTEIN	coord: 1..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G21795.1	Clc10G21795.1	mRNA