Clc10G21310 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G21310
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	DNA double-strand break repair rad50 ATPase, putative isoform 1
Location	ClcChr10: 34543761 .. 34545245 (-)
RNA-Seq Expression	Clc10G21310
Synteny	Clc10G21310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCATTACAGATGCGGATGCACTTTCCCAATCAACTGAAGCTGGCAATGTTCAGTCAACGGTTCAGCATTCTAACGAAATTCAGTCATCATCTCCTAACTGCCCTCCTAATGAGTCTGTGGTTCAAGGATCGAGTGTTGTAAAATGCTTGTTTAATCAGCCTTCATTCTCAATCCCTACGAACTCTTCTGGTCCAAAGACTCCCCCCCGTGCAAATTCCTGTCAAAGCGACAAGTCTACGTCTCCTCATGAGATTTCCTCTGCTGCTGATTGCAGTAACAACAATACTCCACAAGACGTTAGTCCTACTTGCTGCACTGTAATTTCATCAAAAAGAGTGACAATCAGCCCTTACAAGCAAGTTGCTTACTATTCTGTGGAGAGGAACTTTTCTCCTTCCCCTGTGAAGACAAACGCTAAAAGGCAGGGTAAGAGAGATCACGTGAAGGGACGGCTAGATTTTGATATCTCAGATGTACCCATCAGCTTGGACAAGGGGATTGAAAATGAAATTTATGCATCCGAGTCCGAAAAGCAATTGGACATTTTTGACATTGACTTGCCTTCTCTAGATGTTTTTGGAGAAGATTTCTCTTTTACTGAAATGTTGGCTGATTTGGATATGGACTGTGAAGTGATTGGTTGTTCATCCGTCCCAACCTTGGGTGCTTCTACAGACACTCTTTCTGGGTAATTTTCTGCTCATCACACCACTGCAATTCCCACGAACTATCCTTCACCTCTTAATCTGATAGTTTGTTCCATGTTTGTCTTTTCACAGGTCATCTCATGAGTCCATGGACTGTAACATGGGGACTAATCAGATGATGTCAGAATATTCATCAACTGTGACACAAATTTTATCTGGAAAAGAGTTAAATACTGAAGGTAATGTAGTTCATGTTCTACACATCTTGAGGTTCCATTAAGCAATGCATAAGTTTATGGGAAAATTTTGACTATTGCAGGCATGGACTCTTTGACTGCAGTGAAGTCCACAACAAAATGCATAAGAATTTTAAGCCCAGGTAAAACCATATGCAATCTATACTCGTGCACATTATATGGTGTTAGTTAAATTATGCACAGTTAAATCTTTACCTTTTGATATTGCAGGCAAGAAATTATAGACTTGTATCTACCTAAATCTGTGATCAAGATAACTTTGCTGCTTCTGCTAGAAACTGACTGGGATAACTAAAGCTGACAAGAAACTCTTAATCTGAGGGAATATCTATATTTTCACTTCTAGAAAGTTATCTGGTAAGATTAAATTATCATTCATCTGTAATATTAGTCCCATCCTCGCTAGGCATTCTTTTCCCCTTCGATGCTGGAAATACTGATACAATGATCTGTAGATGCAAGAGTAATTTCGTCATGCTTACATTCTATAGTTTGAAATACGAAATGTAAATTTCCAGATGGAGCTTCCTGATGAAATTCTGTAAATGCAGTACAATATGACTGAATGACAATATAC

mRNA sequence

ATGTCCATTACAGATGCGGATGCACTTTCCCAATCAACTGAAGCTGGCAATGTTCAGTCAACGGTTCAGCATTCTAACGAAATTCAGTCATCATCTCCTAACTGCCCTCCTAATGAGTCTGTGGTTCAAGGATCGAGTGTTGTAAAATGCTTGTTTAATCAGCCTTCATTCTCAATCCCTACGAACTCTTCTGGTCCAAAGACTCCCCCCCGTGCAAATTCCTGTCAAAGCGACAAGTCTACGTCTCCTCATGAGATTTCCTCTGCTGCTGATTGCAGTAACAACAATACTCCACAAGACGTTAGTCCTACTTGCTGCACTGTAATTTCATCAAAAAGAGTGACAATCAGCCCTTACAAGCAAGTTGCTTACTATTCTGTGGAGAGGAACTTTTCTCCTTCCCCTGTGAAGACAAACGCTAAAAGGCAGGGTAAGAGAGATCACGTGAAGGGACGGCTAGATTTTGATATCTCAGATGTACCCATCAGCTTGGACAAGGGGATTGAAAATGAAATTTATGCATCCGAGTCCGAAAAGCAATTGGACATTTTTGACATTGACTTGCCTTCTCTAGATGTTTTTGGAGAAGATTTCTCTTTTACTGAAATGTTGGCTGATTTGGATATGGACTGTGAAGTGATTGGTTGTTCATCCGTCCCAACCTTGGGTGCTTCTACAGACACTCTTTCTGGGTCATCTCATGAGTCCATGGACTGTAACATGGGGACTAATCAGATGATGTCAGAATATTCATCAACTGTGACACAAATTTTATCTGGAAAAGAGTTAAATACTGAAGGCATGGACTCTTTGACTGCAGTGAAGTCCACAACAAAATGCATAAGAATTTTAAGCCCAGGCAAGAAATTATAGACTTGTATCTACCTAAATCTGTGATCAAGATAACTTTGCTGCTTCTGCTAGAAACTGACTGGGATAACTAAAGCTGACAAGAAACTCTTAATCTGAGGGAATATCTATATTTTCACTTCTAGAAAGTTATCTGGTAAGATTAAATTATCATTCATCTGTAATATTAGTCCCATCCTCGCTAGGCATTCTTTTCCCCTTCGATGCTGGAAATACTGATACAATGATCTGTAGATGCAAGAGTAATTTCGTCATGCTTACATTCTATAGTTTGAAATACGAAATGTAAATTTCCAGATGGAGCTTCCTGATGAAATTCTGTAAATGCAGTACAATATGACTGAATGACAATATAC

Coding sequence (CDS)

ATGTCCATTACAGATGCGGATGCACTTTCCCAATCAACTGAAGCTGGCAATGTTCAGTCAACGGTTCAGCATTCTAACGAAATTCAGTCATCATCTCCTAACTGCCCTCCTAATGAGTCTGTGGTTCAAGGATCGAGTGTTGTAAAATGCTTGTTTAATCAGCCTTCATTCTCAATCCCTACGAACTCTTCTGGTCCAAAGACTCCCCCCCGTGCAAATTCCTGTCAAAGCGACAAGTCTACGTCTCCTCATGAGATTTCCTCTGCTGCTGATTGCAGTAACAACAATACTCCACAAGACGTTAGTCCTACTTGCTGCACTGTAATTTCATCAAAAAGAGTGACAATCAGCCCTTACAAGCAAGTTGCTTACTATTCTGTGGAGAGGAACTTTTCTCCTTCCCCTGTGAAGACAAACGCTAAAAGGCAGGGTAAGAGAGATCACGTGAAGGGACGGCTAGATTTTGATATCTCAGATGTACCCATCAGCTTGGACAAGGGGATTGAAAATGAAATTTATGCATCCGAGTCCGAAAAGCAATTGGACATTTTTGACATTGACTTGCCTTCTCTAGATGTTTTTGGAGAAGATTTCTCTTTTACTGAAATGTTGGCTGATTTGGATATGGACTGTGAAGTGATTGGTTGTTCATCCGTCCCAACCTTGGGTGCTTCTACAGACACTCTTTCTGGGTCATCTCATGAGTCCATGGACTGTAACATGGGGACTAATCAGATGATGTCAGAATATTCATCAACTGTGACACAAATTTTATCTGGAAAAGAGTTAAATACTGAAGGCATGGACTCTTTGACTGCAGTGAAGTCCACAACAAAATGCATAAGAATTTTAAGCCCAGGCAAGAAATTATAG

Protein sequence

MSITDADALSQSTEAGNVQSTVQHSNEIQSSSPNCPPNESVVQGSSVVKCLFNQPSFSIPTNSSGPKTPPRANSCQSDKSTSPHEISSAADCSNNNTPQDVSPTCCTVISSKRVTISPYKQVAYYSVERNFSPSPVKTNAKRQGKRDHVKGRLDFDISDVPISLDKGIENEIYASESEKQLDIFDIDLPSLDVFGEDFSFTEMLADLDMDCEVIGCSSVPTLGASTDTLSGSSHESMDCNMGTNQMMSEYSSTVTQILSGKELNTEGMDSLTAVKSTTKCIRILSPGKKL

Homology

[Close]

BLAST of Clc10G21310 vs. NCBI nr
Match: XP_022145528.1 (uncharacterized protein LOC111014956 isoform X2 [Momordica charantia])

HSP 1 Score: 516.2 bits (1328), Expect = 1.9e-142
Identity = 268/289 (92.73%), Postives = 275/289 (95.16%), Query Frame = 0


Query: 5   DADALSQSTEAGNVQSTVQHSNEIQSSSPNCPPNESVVQGSSVVKCLFNQPSFSIPTNSS 64
           D DALSQS E GNVQSTVQHSNEIQSSSP+CPPNESVVQGSSVVKCLFNQPSFSIPTNSS
Sbjct: 198 DTDALSQSAEVGNVQSTVQHSNEIQSSSPSCPPNESVVQGSSVVKCLFNQPSFSIPTNSS 257

Query: 65  GPKTPPRANSCQSDKSTSPHEISSAADCSNNNTPQDVSPTCCTVISSKRVTISPYKQVAY 124
           GPKTPPRANSCQSDKSTSPHEISSAADCSNNNTPQDVSPTCCTVISSKRVTISPYKQVAY
Sbjct: 258 GPKTPPRANSCQSDKSTSPHEISSAADCSNNNTPQDVSPTCCTVISSKRVTISPYKQVAY 317

Query: 125 YSVERN---FSPSPVKTNAKRQGKRDHVKGRLDFDISDVPISLDKGIENEIYASESEKQL 184
           YSVERN    SPSPVKTNAKRQGKRDHVKGRLDFD+SDVP+S DKGI+NEIY SESEKQL
Sbjct: 318 YSVERNHSILSPSPVKTNAKRQGKRDHVKGRLDFDVSDVPMSSDKGIDNEIYLSESEKQL 377

Query: 185 DIFDIDLPSLDVFGEDFSFTEMLADLDMDCEVIGCSSVPTLGASTDTLSGSSHESMDCNM 244
           DIFDIDLPSLDVFGEDFSFTEMLADLDMDCEVIGCSSVPTLG STDT SGSSHESMDCN+
Sbjct: 378 DIFDIDLPSLDVFGEDFSFTEMLADLDMDCEVIGCSSVPTLGVSTDTFSGSSHESMDCNV 437

Query: 245 GTNQMMSEYSSTVTQILSGKELNTEGMDSLTAVKSTTKCIRILSPGKKL 291
           GTNQMMSE+SSTVTQILSGKE NTEG+DSLTAVKS TKCIRILSP KKL
Sbjct: 438 GTNQMMSEFSSTVTQILSGKETNTEGVDSLTAVKSMTKCIRILSPAKKL 486

[Close]

BLAST of Clc10G21310 vs. NCBI nr
Match: XP_022145527.1 (uncharacterized protein LOC111014956 isoform X1 [Momordica charantia])

HSP 1 Score: 516.2 bits (1328), Expect = 1.9e-142
Identity = 268/289 (92.73%), Postives = 275/289 (95.16%), Query Frame = 0


Query: 5   DADALSQSTEAGNVQSTVQHSNEIQSSSPNCPPNESVVQGSSVVKCLFNQPSFSIPTNSS 64
           D DALSQS E GNVQSTVQHSNEIQSSSP+CPPNESVVQGSSVVKCLFNQPSFSIPTNSS
Sbjct: 210 DTDALSQSAEVGNVQSTVQHSNEIQSSSPSCPPNESVVQGSSVVKCLFNQPSFSIPTNSS 269

Query: 65  GPKTPPRANSCQSDKSTSPHEISSAADCSNNNTPQDVSPTCCTVISSKRVTISPYKQVAY 124
           GPKTPPRANSCQSDKSTSPHEISSAADCSNNNTPQDVSPTCCTVISSKRVTISPYKQVAY
Sbjct: 270 GPKTPPRANSCQSDKSTSPHEISSAADCSNNNTPQDVSPTCCTVISSKRVTISPYKQVAY 329

Query: 125 YSVERN---FSPSPVKTNAKRQGKRDHVKGRLDFDISDVPISLDKGIENEIYASESEKQL 184
           YSVERN    SPSPVKTNAKRQGKRDHVKGRLDFD+SDVP+S DKGI+NEIY SESEKQL
Sbjct: 330 YSVERNHSILSPSPVKTNAKRQGKRDHVKGRLDFDVSDVPMSSDKGIDNEIYLSESEKQL 389

Query: 185 DIFDIDLPSLDVFGEDFSFTEMLADLDMDCEVIGCSSVPTLGASTDTLSGSSHESMDCNM 244
           DIFDIDLPSLDVFGEDFSFTEMLADLDMDCEVIGCSSVPTLG STDT SGSSHESMDCN+
Sbjct: 390 DIFDIDLPSLDVFGEDFSFTEMLADLDMDCEVIGCSSVPTLGVSTDTFSGSSHESMDCNV 449

Query: 245 GTNQMMSEYSSTVTQILSGKELNTEGMDSLTAVKSTTKCIRILSPGKKL 291
           GTNQMMSE+SSTVTQILSGKE NTEG+DSLTAVKS TKCIRILSP KKL
Sbjct: 450 GTNQMMSEFSSTVTQILSGKETNTEGVDSLTAVKSMTKCIRILSPAKKL 498

[Close]

BLAST of Clc10G21310 vs. NCBI nr
Match: XP_008442481.1 (PREDICTED: uncharacterized protein LOC103486335 [Cucumis melo] >KAA0044138.1 DNA double-strand break repair rad50 ATPase, putative isoform 1 [Cucumis melo var. makuwa] >TYK24999.1 DNA double-strand break repair rad50 ATPase, putative isoform 1 [Cucumis melo var. makuwa])

HSP 1 Score: 513.1 bits (1320), Expect = 1.6e-141
Identity = 272/290 (93.79%), Postives = 276/290 (95.17%), Query Frame = 0


Query: 5   DADALSQSTEAGNVQSTVQHSNEIQSSSPNCPPNESVVQGSSVVKCLFNQPSFSIPTNSS 64
           DADALSQSTEAGN Q TV+HSNEIQSSSP CPP E+VVQGSSVVKCLFNQPSFSIPTNSS
Sbjct: 209 DADALSQSTEAGNDQPTVRHSNEIQSSSPTCPPTETVVQGSSVVKCLFNQPSFSIPTNSS 268

Query: 65  GPKTPPRANSCQSDKSTSPHEISSAADCSNNNTPQDVSPTCCTVI-SSKRVTISPYKQVA 124
           GPKTPPRANSCQSDKSTSPHEISSAADCSN NTPQDVSPTCCTVI SSKRVTISPYKQVA
Sbjct: 269 GPKTPPRANSCQSDKSTSPHEISSAADCSNINTPQDVSPTCCTVISSSKRVTISPYKQVA 328

Query: 125 YYSVERN---FSPSPVKTNAKRQGKRDHVKGRLDFDISDVPISLDKGIENEIYASESEKQ 184
           YYSVERN    SPSPVKTNAKRQGKRD VKGRLDFD+SDVPIS DKGIENEIYASESEKQ
Sbjct: 329 YYSVERNHSILSPSPVKTNAKRQGKRDQVKGRLDFDVSDVPISSDKGIENEIYASESEKQ 388

Query: 185 LDIFDIDLPSLDVFGEDFSFTEMLADLDMDCEVIGCSSVPTLGASTDTLSGSSHESMDCN 244
           LDIFDIDLPSLDVFGEDFSFTEMLADLDMDCEVIGCSSVPT GASTDTLSGSSHESMDCN
Sbjct: 389 LDIFDIDLPSLDVFGEDFSFTEMLADLDMDCEVIGCSSVPTFGASTDTLSGSSHESMDCN 448

Query: 245 MGTNQMMSEYSSTVTQILSGKELNTEGMDSLTAVKSTTKCIRILSPGKKL 291
           +GTNQMMSEYSSTVTQILSGKELNTEGMDSLTAVKSTTKCIRILSP KKL
Sbjct: 449 VGTNQMMSEYSSTVTQILSGKELNTEGMDSLTAVKSTTKCIRILSPAKKL 498

[Close]

BLAST of Clc10G21310 vs. NCBI nr
Match: XP_004137918.1 (uncharacterized protein LOC101221367 [Cucumis sativus] >KGN58811.1 hypothetical protein Csa_000802 [Cucumis sativus])

HSP 1 Score: 509.2 bits (1310), Expect = 2.3e-140
Identity = 268/290 (92.41%), Postives = 277/290 (95.52%), Query Frame = 0


Query: 5   DADALSQSTEAGNVQSTVQHSNEIQSSSPNCPPNESVVQGSSVVKCLFNQPSFSIPTNSS 64
           DADALSQSTEA N+Q TV+HSNEIQSSSP CPPNE+VV+GSSVVKCLFNQPSFSIPTNSS
Sbjct: 209 DADALSQSTEASNLQPTVRHSNEIQSSSPTCPPNETVVEGSSVVKCLFNQPSFSIPTNSS 268

Query: 65  GPKTPPRANSCQSDKSTSPHEISSAADCSNNNTPQDVSPTCCTVI-SSKRVTISPYKQVA 124
           GPKTPPRANSCQSDKSTSPHEISSAA+CSN NTPQDVSPTCCTVI SSKRVTISPYKQVA
Sbjct: 269 GPKTPPRANSCQSDKSTSPHEISSAAECSNINTPQDVSPTCCTVISSSKRVTISPYKQVA 328

Query: 125 YYSVERN---FSPSPVKTNAKRQGKRDHVKGRLDFDISDVPISLDKGIENEIYASESEKQ 184
           YYSVERN    SPSPVKTNAKRQGKRD VKGRLDFD+SDVPIS DKGIENE+YA+ESEKQ
Sbjct: 329 YYSVERNHSILSPSPVKTNAKRQGKRDQVKGRLDFDVSDVPISSDKGIENEVYAAESEKQ 388

Query: 185 LDIFDIDLPSLDVFGEDFSFTEMLADLDMDCEVIGCSSVPTLGASTDTLSGSSHESMDCN 244
           LDIFDIDLPSLDVFGEDFSFTEMLADLDMDCEVIGCSSVPTLGASTDT SGSSHESMDCN
Sbjct: 389 LDIFDIDLPSLDVFGEDFSFTEMLADLDMDCEVIGCSSVPTLGASTDTHSGSSHESMDCN 448

Query: 245 MGTNQMMSEYSSTVTQILSGKELNTEGMDSLTAVKSTTKCIRILSPGKKL 291
           +GTNQMMSEYSSTVTQILSGKELNTEGMDSLTAVKSTTKCIRILSP KKL
Sbjct: 449 VGTNQMMSEYSSTVTQILSGKELNTEGMDSLTAVKSTTKCIRILSPAKKL 498

[Close]

BLAST of Clc10G21310 vs. NCBI nr
Match: XP_038905640.1 (uncharacterized protein LOC120091608 [Benincasa hispida])

HSP 1 Score: 508.4 bits (1308), Expect = 3.9e-140
Identity = 267/289 (92.39%), Postives = 275/289 (95.16%), Query Frame = 0


Query: 5   DADALSQSTEAGNVQSTVQHSNEIQSSSPNCPPNESVVQGSSVVKCLFNQPSFSIPTNSS 64
           DADALSQSTEAGNVQSTVQHSNEIQSSSPNC PNESVVQGSSVVKCLFNQPSFSIPTNSS
Sbjct: 209 DADALSQSTEAGNVQSTVQHSNEIQSSSPNCLPNESVVQGSSVVKCLFNQPSFSIPTNSS 268

Query: 65  GPKTPPRANSCQSDKSTSPHEISSAADCSNNNTPQDVSPTCCTVISSKRVTISPYKQVAY 124
           GPKTPPRANSCQSDKSTSPHEISSAADCSNNNTPQ VSPT CTVISSKRVTISPYKQ+AY
Sbjct: 269 GPKTPPRANSCQSDKSTSPHEISSAADCSNNNTPQGVSPTGCTVISSKRVTISPYKQIAY 328

Query: 125 YSVERN---FSPSPVKTNAKRQGKRDHVKGRLDFDISDVPISLDKGIENEIYASESEKQL 184
           YSVERN    SPSPVKTN+KRQG RDHVKGRLDFDI+D+PIS DKGIE+EIYASESEKQL
Sbjct: 329 YSVERNHSILSPSPVKTNSKRQGNRDHVKGRLDFDITDIPISSDKGIESEIYASESEKQL 388

Query: 185 DIFDIDLPSLDVFGEDFSFTEMLADLDMDCEVIGCSSVPTLGASTDTLSGSSHESMDCNM 244
           DIFDID PSLDVFGEDFSFTEMLADLDM+CEV GCSSVPTLGASTDTLSGSSHESMDCN+
Sbjct: 389 DIFDIDFPSLDVFGEDFSFTEMLADLDMECEVTGCSSVPTLGASTDTLSGSSHESMDCNV 448

Query: 245 GTNQMMSEYSSTVTQILSGKELNTEGMDSLTAVKSTTKCIRILSPGKKL 291
            TNQMMSEYSSTVTQIL+GKELNTEGMDSLTAVKSTTKCI ILSP KKL
Sbjct: 449 ETNQMMSEYSSTVTQILAGKELNTEGMDSLTAVKSTTKCITILSPAKKL 497

[Close]

BLAST of Clc10G21310 vs. ExPASy TrEMBL
Match: A0A6J1CW68 (uncharacterized protein LOC111014956 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111014956 PE=4 SV=1)

HSP 1 Score: 516.2 bits (1328), Expect = 9.1e-143
Identity = 268/289 (92.73%), Postives = 275/289 (95.16%), Query Frame = 0


Query: 5   DADALSQSTEAGNVQSTVQHSNEIQSSSPNCPPNESVVQGSSVVKCLFNQPSFSIPTNSS 64
           D DALSQS E GNVQSTVQHSNEIQSSSP+CPPNESVVQGSSVVKCLFNQPSFSIPTNSS
Sbjct: 198 DTDALSQSAEVGNVQSTVQHSNEIQSSSPSCPPNESVVQGSSVVKCLFNQPSFSIPTNSS 257

Query: 65  GPKTPPRANSCQSDKSTSPHEISSAADCSNNNTPQDVSPTCCTVISSKRVTISPYKQVAY 124
           GPKTPPRANSCQSDKSTSPHEISSAADCSNNNTPQDVSPTCCTVISSKRVTISPYKQVAY
Sbjct: 258 GPKTPPRANSCQSDKSTSPHEISSAADCSNNNTPQDVSPTCCTVISSKRVTISPYKQVAY 317

Query: 125 YSVERN---FSPSPVKTNAKRQGKRDHVKGRLDFDISDVPISLDKGIENEIYASESEKQL 184
           YSVERN    SPSPVKTNAKRQGKRDHVKGRLDFD+SDVP+S DKGI+NEIY SESEKQL
Sbjct: 318 YSVERNHSILSPSPVKTNAKRQGKRDHVKGRLDFDVSDVPMSSDKGIDNEIYLSESEKQL 377

Query: 185 DIFDIDLPSLDVFGEDFSFTEMLADLDMDCEVIGCSSVPTLGASTDTLSGSSHESMDCNM 244
           DIFDIDLPSLDVFGEDFSFTEMLADLDMDCEVIGCSSVPTLG STDT SGSSHESMDCN+
Sbjct: 378 DIFDIDLPSLDVFGEDFSFTEMLADLDMDCEVIGCSSVPTLGVSTDTFSGSSHESMDCNV 437

Query: 245 GTNQMMSEYSSTVTQILSGKELNTEGMDSLTAVKSTTKCIRILSPGKKL 291
           GTNQMMSE+SSTVTQILSGKE NTEG+DSLTAVKS TKCIRILSP KKL
Sbjct: 438 GTNQMMSEFSSTVTQILSGKETNTEGVDSLTAVKSMTKCIRILSPAKKL 486

[Close]

BLAST of Clc10G21310 vs. ExPASy TrEMBL
Match: A0A6J1CWV6 (uncharacterized protein LOC111014956 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111014956 PE=4 SV=1)

HSP 1 Score: 516.2 bits (1328), Expect = 9.1e-143
Identity = 268/289 (92.73%), Postives = 275/289 (95.16%), Query Frame = 0


Query: 5   DADALSQSTEAGNVQSTVQHSNEIQSSSPNCPPNESVVQGSSVVKCLFNQPSFSIPTNSS 64
           D DALSQS E GNVQSTVQHSNEIQSSSP+CPPNESVVQGSSVVKCLFNQPSFSIPTNSS
Sbjct: 210 DTDALSQSAEVGNVQSTVQHSNEIQSSSPSCPPNESVVQGSSVVKCLFNQPSFSIPTNSS 269

Query: 65  GPKTPPRANSCQSDKSTSPHEISSAADCSNNNTPQDVSPTCCTVISSKRVTISPYKQVAY 124
           GPKTPPRANSCQSDKSTSPHEISSAADCSNNNTPQDVSPTCCTVISSKRVTISPYKQVAY
Sbjct: 270 GPKTPPRANSCQSDKSTSPHEISSAADCSNNNTPQDVSPTCCTVISSKRVTISPYKQVAY 329

Query: 125 YSVERN---FSPSPVKTNAKRQGKRDHVKGRLDFDISDVPISLDKGIENEIYASESEKQL 184
           YSVERN    SPSPVKTNAKRQGKRDHVKGRLDFD+SDVP+S DKGI+NEIY SESEKQL
Sbjct: 330 YSVERNHSILSPSPVKTNAKRQGKRDHVKGRLDFDVSDVPMSSDKGIDNEIYLSESEKQL 389

Query: 185 DIFDIDLPSLDVFGEDFSFTEMLADLDMDCEVIGCSSVPTLGASTDTLSGSSHESMDCNM 244
           DIFDIDLPSLDVFGEDFSFTEMLADLDMDCEVIGCSSVPTLG STDT SGSSHESMDCN+
Sbjct: 390 DIFDIDLPSLDVFGEDFSFTEMLADLDMDCEVIGCSSVPTLGVSTDTFSGSSHESMDCNV 449

Query: 245 GTNQMMSEYSSTVTQILSGKELNTEGMDSLTAVKSTTKCIRILSPGKKL 291
           GTNQMMSE+SSTVTQILSGKE NTEG+DSLTAVKS TKCIRILSP KKL
Sbjct: 450 GTNQMMSEFSSTVTQILSGKETNTEGVDSLTAVKSMTKCIRILSPAKKL 498

[Close]

BLAST of Clc10G21310 vs. ExPASy TrEMBL
Match: A0A5A7TMN6 (DNA double-strand break repair rad50 ATPase, putative isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001170 PE=4 SV=1)

HSP 1 Score: 513.1 bits (1320), Expect = 7.7e-142
Identity = 272/290 (93.79%), Postives = 276/290 (95.17%), Query Frame = 0


Query: 5   DADALSQSTEAGNVQSTVQHSNEIQSSSPNCPPNESVVQGSSVVKCLFNQPSFSIPTNSS 64
           DADALSQSTEAGN Q TV+HSNEIQSSSP CPP E+VVQGSSVVKCLFNQPSFSIPTNSS
Sbjct: 209 DADALSQSTEAGNDQPTVRHSNEIQSSSPTCPPTETVVQGSSVVKCLFNQPSFSIPTNSS 268

Query: 65  GPKTPPRANSCQSDKSTSPHEISSAADCSNNNTPQDVSPTCCTVI-SSKRVTISPYKQVA 124
           GPKTPPRANSCQSDKSTSPHEISSAADCSN NTPQDVSPTCCTVI SSKRVTISPYKQVA
Sbjct: 269 GPKTPPRANSCQSDKSTSPHEISSAADCSNINTPQDVSPTCCTVISSSKRVTISPYKQVA 328

Query: 125 YYSVERN---FSPSPVKTNAKRQGKRDHVKGRLDFDISDVPISLDKGIENEIYASESEKQ 184
           YYSVERN    SPSPVKTNAKRQGKRD VKGRLDFD+SDVPIS DKGIENEIYASESEKQ
Sbjct: 329 YYSVERNHSILSPSPVKTNAKRQGKRDQVKGRLDFDVSDVPISSDKGIENEIYASESEKQ 388

Query: 185 LDIFDIDLPSLDVFGEDFSFTEMLADLDMDCEVIGCSSVPTLGASTDTLSGSSHESMDCN 244
           LDIFDIDLPSLDVFGEDFSFTEMLADLDMDCEVIGCSSVPT GASTDTLSGSSHESMDCN
Sbjct: 389 LDIFDIDLPSLDVFGEDFSFTEMLADLDMDCEVIGCSSVPTFGASTDTLSGSSHESMDCN 448

Query: 245 MGTNQMMSEYSSTVTQILSGKELNTEGMDSLTAVKSTTKCIRILSPGKKL 291
           +GTNQMMSEYSSTVTQILSGKELNTEGMDSLTAVKSTTKCIRILSP KKL
Sbjct: 449 VGTNQMMSEYSSTVTQILSGKELNTEGMDSLTAVKSTTKCIRILSPAKKL 498

[Close]

BLAST of Clc10G21310 vs. ExPASy TrEMBL
Match: A0A1S3B5S4 (uncharacterized protein LOC103486335 OS=Cucumis melo OX=3656 GN=LOC103486335 PE=4 SV=1)

HSP 1 Score: 513.1 bits (1320), Expect = 7.7e-142
Identity = 272/290 (93.79%), Postives = 276/290 (95.17%), Query Frame = 0


Query: 5   DADALSQSTEAGNVQSTVQHSNEIQSSSPNCPPNESVVQGSSVVKCLFNQPSFSIPTNSS 64
           DADALSQSTEAGN Q TV+HSNEIQSSSP CPP E+VVQGSSVVKCLFNQPSFSIPTNSS
Sbjct: 209 DADALSQSTEAGNDQPTVRHSNEIQSSSPTCPPTETVVQGSSVVKCLFNQPSFSIPTNSS 268

Query: 65  GPKTPPRANSCQSDKSTSPHEISSAADCSNNNTPQDVSPTCCTVI-SSKRVTISPYKQVA 124
           GPKTPPRANSCQSDKSTSPHEISSAADCSN NTPQDVSPTCCTVI SSKRVTISPYKQVA
Sbjct: 269 GPKTPPRANSCQSDKSTSPHEISSAADCSNINTPQDVSPTCCTVISSSKRVTISPYKQVA 328

Query: 125 YYSVERN---FSPSPVKTNAKRQGKRDHVKGRLDFDISDVPISLDKGIENEIYASESEKQ 184
           YYSVERN    SPSPVKTNAKRQGKRD VKGRLDFD+SDVPIS DKGIENEIYASESEKQ
Sbjct: 329 YYSVERNHSILSPSPVKTNAKRQGKRDQVKGRLDFDVSDVPISSDKGIENEIYASESEKQ 388

Query: 185 LDIFDIDLPSLDVFGEDFSFTEMLADLDMDCEVIGCSSVPTLGASTDTLSGSSHESMDCN 244
           LDIFDIDLPSLDVFGEDFSFTEMLADLDMDCEVIGCSSVPT GASTDTLSGSSHESMDCN
Sbjct: 389 LDIFDIDLPSLDVFGEDFSFTEMLADLDMDCEVIGCSSVPTFGASTDTLSGSSHESMDCN 448

Query: 245 MGTNQMMSEYSSTVTQILSGKELNTEGMDSLTAVKSTTKCIRILSPGKKL 291
           +GTNQMMSEYSSTVTQILSGKELNTEGMDSLTAVKSTTKCIRILSP KKL
Sbjct: 449 VGTNQMMSEYSSTVTQILSGKELNTEGMDSLTAVKSTTKCIRILSPAKKL 498

[Close]

BLAST of Clc10G21310 vs. ExPASy TrEMBL
Match: A0A0A0LFF6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G732670 PE=4 SV=1)

HSP 1 Score: 509.2 bits (1310), Expect = 1.1e-140
Identity = 268/290 (92.41%), Postives = 277/290 (95.52%), Query Frame = 0


Query: 5   DADALSQSTEAGNVQSTVQHSNEIQSSSPNCPPNESVVQGSSVVKCLFNQPSFSIPTNSS 64
           DADALSQSTEA N+Q TV+HSNEIQSSSP CPPNE+VV+GSSVVKCLFNQPSFSIPTNSS
Sbjct: 209 DADALSQSTEASNLQPTVRHSNEIQSSSPTCPPNETVVEGSSVVKCLFNQPSFSIPTNSS 268

Query: 65  GPKTPPRANSCQSDKSTSPHEISSAADCSNNNTPQDVSPTCCTVI-SSKRVTISPYKQVA 124
           GPKTPPRANSCQSDKSTSPHEISSAA+CSN NTPQDVSPTCCTVI SSKRVTISPYKQVA
Sbjct: 269 GPKTPPRANSCQSDKSTSPHEISSAAECSNINTPQDVSPTCCTVISSSKRVTISPYKQVA 328

Query: 125 YYSVERN---FSPSPVKTNAKRQGKRDHVKGRLDFDISDVPISLDKGIENEIYASESEKQ 184
           YYSVERN    SPSPVKTNAKRQGKRD VKGRLDFD+SDVPIS DKGIENE+YA+ESEKQ
Sbjct: 329 YYSVERNHSILSPSPVKTNAKRQGKRDQVKGRLDFDVSDVPISSDKGIENEVYAAESEKQ 388

Query: 185 LDIFDIDLPSLDVFGEDFSFTEMLADLDMDCEVIGCSSVPTLGASTDTLSGSSHESMDCN 244
           LDIFDIDLPSLDVFGEDFSFTEMLADLDMDCEVIGCSSVPTLGASTDT SGSSHESMDCN
Sbjct: 389 LDIFDIDLPSLDVFGEDFSFTEMLADLDMDCEVIGCSSVPTLGASTDTHSGSSHESMDCN 448

Query: 245 MGTNQMMSEYSSTVTQILSGKELNTEGMDSLTAVKSTTKCIRILSPGKKL 291
           +GTNQMMSEYSSTVTQILSGKELNTEGMDSLTAVKSTTKCIRILSP KKL
Sbjct: 449 VGTNQMMSEYSSTVTQILSGKELNTEGMDSLTAVKSTTKCIRILSPAKKL 498

[Close]

BLAST of Clc10G21310 vs. TAIR 10
Match: AT2G37960.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54060.2); Has 418 Blast hits to 247 proteins in 92 species: Archae - 0; Bacteria - 163; Metazoa - 49; Fungi - 80; Plants - 28; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink). )

HSP 1 Score: 195.3 bits (495), Expect = 6.9e-50
Identity = 121/276 (43.84%), Postives = 174/276 (63.04%), Query Frame = 0


Query: 21  TVQHSNEIQSSSPN-CPPNESVVQGSSVVKCLFNQPSFSIPTNSSGPKTPPRANSCQSDK 80
           T Q  +E+Q+   N    NES    SSV KCLF++   S P+NS+ P+TP +  S QSDK
Sbjct: 216 TFQTPSEMQTPLNNGVATNESSDLTSSVAKCLFDKSGTSPPSNSTCPRTPQQKVSPQSDK 275

Query: 81  STSPHEISSAADCSNNNTPQDVSPTCCTVISSKRVTISPYKQVAYYSVERNF---SPSPV 140
                               +V+PT CT+++ +R+T+SP KQ+A Y+VER+    S SPV
Sbjct: 276 --------------------EVTPTNCTIVTKERITVSPLKQIASYTVERSHTVSSFSPV 335

Query: 141 KTNAKRQGKRDHVKGRLDFDISDVPISLDKGIENEIY---ASESEKQLDIFDIDLPSLDV 200
           K+N K   KRDHVKGRL+FD ++  + LD     ++    +S SE + D+FDID  ++D+
Sbjct: 336 KSNLKMSSKRDHVKGRLNFDDTEATMHLDAPATVDMVSTSSSGSEAEADLFDIDFSNIDL 395

Query: 201 FGEDFSFTEMLADLDMDCEVIGCSSVP-TLGASTDTLSGSSHESMDCNMGTNQMMSEYSS 260
             EDFSF+E+L D D+ CE +   S+P       +T SGSS ES + N+  +Q++SEY+S
Sbjct: 396 LSEDFSFSELLFDFDIGCEEMSNHSLPQPSNFHIETASGSSPESRNTNLEPDQVVSEYTS 455

Query: 261 TVTQILSGKELNTEGMDSLTAVKSTTKCIRILSPGK 289
           TVT+++ GK++NT+G DS+T VKS TKC+RILSP K
Sbjct: 456 TVTEMIQGKDMNTQGSDSMTTVKSITKCLRILSPAK 471

[Close]

BLAST of Clc10G21310 vs. TAIR 10
Match: AT2G37960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54060.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 195.3 bits (495), Expect = 6.9e-50
Identity = 121/276 (43.84%), Postives = 174/276 (63.04%), Query Frame = 0


Query: 21  TVQHSNEIQSSSPN-CPPNESVVQGSSVVKCLFNQPSFSIPTNSSGPKTPPRANSCQSDK 80
           T Q  +E+Q+   N    NES    SSV KCLF++   S P+NS+ P+TP +  S QSDK
Sbjct: 216 TFQTPSEMQTPLNNGVATNESSDLTSSVAKCLFDKSGTSPPSNSTCPRTPQQKVSPQSDK 275

Query: 81  STSPHEISSAADCSNNNTPQDVSPTCCTVISSKRVTISPYKQVAYYSVERNF---SPSPV 140
                               +V+PT CT+++ +R+T+SP KQ+A Y+VER+    S SPV
Sbjct: 276 --------------------EVTPTNCTIVTKERITVSPLKQIASYTVERSHTVSSFSPV 335

Query: 141 KTNAKRQGKRDHVKGRLDFDISDVPISLDKGIENEIY---ASESEKQLDIFDIDLPSLDV 200
           K+N K   KRDHVKGRL+FD ++  + LD     ++    +S SE + D+FDID  ++D+
Sbjct: 336 KSNLKMSSKRDHVKGRLNFDDTEATMHLDAPATVDMVSTSSSGSEAEADLFDIDFSNIDL 395

Query: 201 FGEDFSFTEMLADLDMDCEVIGCSSVP-TLGASTDTLSGSSHESMDCNMGTNQMMSEYSS 260
             EDFSF+E+L D D+ CE +   S+P       +T SGSS ES + N+  +Q++SEY+S
Sbjct: 396 LSEDFSFSELLFDFDIGCEEMSNHSLPQPSNFHIETASGSSPESRNTNLEPDQVVSEYTS 455

Query: 261 TVTQILSGKELNTEGMDSLTAVKSTTKCIRILSPGK 289
           TVT+++ GK++NT+G DS+T VKS TKC+RILSP K
Sbjct: 456 TVTEMIQGKDMNTQGSDSMTTVKSITKCLRILSPAK 471

[Close]

BLAST of Clc10G21310 vs. TAIR 10
Match: AT3G54060.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37960.2); Has 455 Blast hits to 322 proteins in 98 species: Archae - 0; Bacteria - 178; Metazoa - 88; Fungi - 75; Plants - 28; Viruses - 2; Other Eukaryotes - 84 (source: NCBI BLink). )

HSP 1 Score: 141.7 bits (356), Expect = 9.0e-34
Identity = 105/266 (39.47%), Postives = 154/266 (57.89%), Query Frame = 0


Query: 4   TDADALSQSTEAGNVQSTVQHSNEIQSSSPNCPPNESVVQGSSVVKCLFNQPSFSIPTNS 63
           T  + L Q+ +A N       ++E  + + N   NE +  GSSVVKCLFN+   S+PT+S
Sbjct: 197 TGTNKLPQADKAAN-----NFTSETLAVAKNSASNELIGNGSSVVKCLFNKADSSVPTSS 256

Query: 64  SGPKTPPRANSCQSDKSTSPHEISSAADCSNNNTPQDVSP--TCCTVISSKRVTISPYKQ 123
           +  +TP +  S  SDKS              N++ ++V+P  T CT+++ +R TISP KQ
Sbjct: 257 TCFRTPQKHASSGSDKS--------------NSSQKEVTPTNTNCTIVTKERFTISPLKQ 316

Query: 124 VAYYSVER----NFSPSPVKTNAKRQGKRDHVKGRLDFDISDVPISLDKGIENEIYA--- 183
           +  YSVER    +FS SPVK+N K   KRDHVKG+L+FD +D    L+     ++ +   
Sbjct: 317 ITSYSVERSHLISFS-SPVKSNLKMSNKRDHVKGKLNFDDTDTETCLEAPATADLVSTSP 376

Query: 184 SESEKQLDIFDIDLPSLDVFGEDFSFTEMLADLDMDCE--VIGCSSVPTLGASTDTLSGS 243
           S SE ++D+FD+D  +LD       F+E+L D D+ CE     C S+ T    T T+SGS
Sbjct: 377 SGSEPEVDLFDMDFSNLD-------FSELLVDFDLGCEGSANHCLSL-TPNQPTQTVSGS 434

Query: 244 SHESMDCNMGTNQMMSEYSSTVTQIL 259
           S ES DCN+ ++Q   EY+STVT ++
Sbjct: 437 SPESGDCNLESDQPFLEYTSTVTDVI 434

[Close]

BLAST of Clc10G21310 vs. TAIR 10
Match: AT3G54060.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37960.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 141.7 bits (356), Expect = 9.0e-34
Identity = 105/266 (39.47%), Postives = 154/266 (57.89%), Query Frame = 0


Query: 4   TDADALSQSTEAGNVQSTVQHSNEIQSSSPNCPPNESVVQGSSVVKCLFNQPSFSIPTNS 63
           T  + L Q+ +A N       ++E  + + N   NE +  GSSVVKCLFN+   S+PT+S
Sbjct: 197 TGTNKLPQADKAAN-----NFTSETLAVAKNSASNELIGNGSSVVKCLFNKADSSVPTSS 256

Query: 64  SGPKTPPRANSCQSDKSTSPHEISSAADCSNNNTPQDVSP--TCCTVISSKRVTISPYKQ 123
           +  +TP +  S  SDKS              N++ ++V+P  T CT+++ +R TISP KQ
Sbjct: 257 TCFRTPQKHASSGSDKS--------------NSSQKEVTPTNTNCTIVTKERFTISPLKQ 316

Query: 124 VAYYSVER----NFSPSPVKTNAKRQGKRDHVKGRLDFDISDVPISLDKGIENEIYA--- 183
           +  YSVER    +FS SPVK+N K   KRDHVKG+L+FD +D    L+     ++ +   
Sbjct: 317 ITSYSVERSHLISFS-SPVKSNLKMSNKRDHVKGKLNFDDTDTETCLEAPATADLVSTSP 376

Query: 184 SESEKQLDIFDIDLPSLDVFGEDFSFTEMLADLDMDCE--VIGCSSVPTLGASTDTLSGS 243
           S SE ++D+FD+D  +LD       F+E+L D D+ CE     C S+ T    T T+SGS
Sbjct: 377 SGSEPEVDLFDMDFSNLD-------FSELLVDFDLGCEGSANHCLSL-TPNQPTQTVSGS 434

Query: 244 SHESMDCNMGTNQMMSEYSSTVTQIL 259
           S ES DCN+ ++Q   EY+STVT ++
Sbjct: 437 SPESGDCNLESDQPFLEYTSTVTDVI 434

The following BLAST results are available for this feature:

BLAST of Clc10G21310 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145528.1	1.9e-142	92.73	uncharacterized protein LOC111014956 isoform X2 [Momordica charantia]	[more]
XP_022145527.1	1.9e-142	92.73	uncharacterized protein LOC111014956 isoform X1 [Momordica charantia]	[more]
XP_008442481.1	1.6e-141	93.79	PREDICTED: uncharacterized protein LOC103486335 [Cucumis melo] >KAA0044138.1 DNA...	[more]
XP_004137918.1	2.3e-140	92.41	uncharacterized protein LOC101221367 [Cucumis sativus] >KGN58811.1 hypothetical ...	[more]
XP_038905640.1	3.9e-140	92.39	uncharacterized protein LOC120091608 [Benincasa hispida]	[more]

BLAST of Clc10G21310 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc10G21310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CW68	9.1e-143	92.73	uncharacterized protein LOC111014956 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CWV6	9.1e-143	92.73	uncharacterized protein LOC111014956 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A5A7TMN6	7.7e-142	93.79	DNA double-strand break repair rad50 ATPase, putative isoform 1 OS=Cucumis melo ...	[more]
A0A1S3B5S4	7.7e-142	93.79	uncharacterized protein LOC103486335 OS=Cucumis melo OX=3656 GN=LOC103486335 PE=...	[more]
A0A0A0LFF6	1.1e-140	92.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G732670 PE=4 SV=1	[more]

BLAST of Clc10G21310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37960.1	6.9e-50	43.84	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G37960.2	6.9e-50	43.84	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G54060.1	9.0e-34	39.47	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G54060.2	9.0e-34	39.47	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..101
None	No IPR available	PANTHER	PTHR35117	MYOSIN-M HEAVY PROTEIN	coord: 4..289

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G21310.2	Clc10G21310.2	mRNA