Clc10G20750 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G20750
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	cyclin-dependent protein kinase inhibitor SMR4
Location	ClcChr10: 34186911 .. 34187468 (+)
RNA-Seq Expression	Clc10G20750
Synteny	Clc10G20750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTATTTTTAGCTGAGCTGAAAATTCAAAAGGTTTAAAAAATAATAATAAAAAAGAAAAAAAGAAAAGCTGGAAAGACCCAGTCAACAATTGACGCGTAGACGACTTCCATTTCTTAGCTGTCTCCCACATCCACGCCACTCCCCGCCATTCATTTATCTCTCTCTTTCAACACACACCAAAATTTCAAAATCAAATTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTATCGCCACCGTCCACGGCGGCGTTCTGCACGGAGTTTCGAAATTTCATTACCTTCTTACAAACTCAACCAAATAAACCTCTGCCAGATACTTCTCATTTCTCTGGGGATGGAGGCGAAACAGGGGTCTGCAAATTACGAGGAAGAGTGTTCGACGCCGACCCGGTGGGAGTGTCGGATTCCGGCAGTGTTCAACTGTCCGCCGCCGCCGAAGAAGAAAGTTGGAAGCGATGGGAAGAAGCGGGACCCACCCAAACATGGCTATTTTCAGCCACCTGATCTTGAGGCTCTGTTTTCTGTTCCTCCCAGAAGGGAAGCCTGTGCTTAA

mRNA sequence

ATGTTATTTTTAGCTGAGCTGAAAATTCAAAAGCTGTCTCCCACATCCACGCCACTCCCCGCCATTCATTTATCTCTCTCTTTCAACACACACCAAAATTTCAAAATCAAATTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTATCGCCACCGTCCACGGCGGCGTTCTGCACGGAGTTTCGAAATTTCATTACCTTCTTACAAACTCAACCAAATAAACCTCTGCCAGATACTTCTCATTTCTCTGGGGATGGAGGCGAAACAGGGGTCTGCAAATTACGAGGAAGAGTGTTCGACGCCGACCCGGTGGGAGTGTCGGATTCCGGCAGTGTTCAACTGTCCGCCGCCGCCGAAGAAGAAAGTTGGAAGCGATGGGAAGAAGCGGGACCCACCCAAACATGGCTATTTTCAGCCACCTGATCTTGAGGCTCTGTTTTCTGTTCCTCCCAGAAGGGAAGCCTGTGCTTAA

Coding sequence (CDS)

ATGTTATTTTTAGCTGAGCTGAAAATTCAAAAGCTGTCTCCCACATCCACGCCACTCCCCGCCATTCATTTATCTCTCTCTTTCAACACACACCAAAATTTCAAAATCAAATTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTATCGCCACCGTCCACGGCGGCGTTCTGCACGGAGTTTCGAAATTTCATTACCTTCTTACAAACTCAACCAAATAAACCTCTGCCAGATACTTCTCATTTCTCTGGGGATGGAGGCGAAACAGGGGTCTGCAAATTACGAGGAAGAGTGTTCGACGCCGACCCGGTGGGAGTGTCGGATTCCGGCAGTGTTCAACTGTCCGCCGCCGCCGAAGAAGAAAGTTGGAAGCGATGGGAAGAAGCGGGACCCACCCAAACATGGCTATTTTCAGCCACCTGATCTTGAGGCTCTGTTTTCTGTTCCTCCCAGAAGGGAAGCCTGTGCTTAA

Protein sequence

MLFLAELKIQKLSPTSTPLPAIHLSLSFNTHQNFKIKFSSSSSSSSSSYRHRPRRRSARSFEISLPSYKLNQINLCQILLISLGMEAKQGSANYEEECSTPTRWECRIPAVFNCPPPPKKKVGSDGKKRDPPKHGYFQPPDLEALFSVPPRREACA

Homology

[Close]

BLAST of Clc10G20750 vs. NCBI nr
Match: XP_038905412.1 (cyclin-dependent protein kinase inhibitor SMR4 [Benincasa hispida])

HSP 1 Score: 158.3 bits (399), Expect = 5.4e-35
Identity = 69/72 (95.83%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 85  MEAKQGSANYEEECSTPTRWECRIPAVFNCPPPPKKKVGSDGKKRDPPKHGYFQPPDLEA 144
           MEAKQG ANYEEECSTPTRWECRIPAVFNCPPPPKKK+G+DGKKRDPPKHGYFQPPDLEA
Sbjct: 1   MEAKQGPANYEEECSTPTRWECRIPAVFNCPPPPKKKIGTDGKKRDPPKHGYFQPPDLEA 60

Query: 145 LFSVPPRREACA 157
           LFSVPPRREACA
Sbjct: 61  LFSVPPRREACA 72

[Close]

BLAST of Clc10G20750 vs. NCBI nr
Match: XP_031737830.1 (cyclin-dependent protein kinase inhibitor SMR4 [Cucumis sativus] >KAE8651008.1 hypothetical protein Csa_002137 [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 3.6e-31
Identity = 62/72 (86.11%), Postives = 68/72 (94.44%), Query Frame = 0


Query: 85  MEAKQGSANYEEECSTPTRWECRIPAVFNCPPPPKKKVGSDGKKRDPPKHGYFQPPDLEA 144
           M++KQG+ NYEEECSTPTRWECRIPAVFNCPPPPKKK  + GKKR+PPKHGYFQPPDLEA
Sbjct: 1   MDSKQGTGNYEEECSTPTRWECRIPAVFNCPPPPKKKNATAGKKREPPKHGYFQPPDLEA 60

Query: 145 LFSVPPRREACA 157
           LFS+PPRREACA
Sbjct: 61  LFSIPPRREACA 72

[Close]

BLAST of Clc10G20750 vs. NCBI nr
Match: XP_023528630.1 (cyclin-dependent protein kinase inhibitor SMR4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 144.1 bits (362), Expect = 1.1e-30
Identity = 66/74 (89.19%), Postives = 67/74 (90.54%), Query Frame = 0


Query: 85  MEAKQGSANYEEECSTPTRWECRIPAVFNCPPPP---KKKVGSDGKKRDPPKHGYFQPPD 144
           MEAKQG ANYEEECSTPTRWECRIPAVFNCPPPP   KKK  S GKKR+PPKHGYFQPPD
Sbjct: 1   MEAKQGPANYEEECSTPTRWECRIPAVFNCPPPPPPKKKKAVSSGKKREPPKHGYFQPPD 60

Query: 145 LEALFSVPPRREAC 156
           LEALFSVPPRREAC
Sbjct: 61  LEALFSVPPRREAC 74

[Close]

BLAST of Clc10G20750 vs. NCBI nr
Match: XP_022983341.1 (cyclin-dependent protein kinase inhibitor SMR4 [Cucurbita maxima])

HSP 1 Score: 142.5 bits (358), Expect = 3.1e-30
Identity = 65/74 (87.84%), Postives = 66/74 (89.19%), Query Frame = 0


Query: 85  MEAKQGSANYEEECSTPTRWECRIPAVFNCPPPP---KKKVGSDGKKRDPPKHGYFQPPD 144
           MEAKQG ANYEEECSTPTRWECRIPAVFNCPPPP   KKK    GKKR+PPKHGYFQPPD
Sbjct: 1   MEAKQGPANYEEECSTPTRWECRIPAVFNCPPPPPPKKKKAVGSGKKREPPKHGYFQPPD 60

Query: 145 LEALFSVPPRREAC 156
           LEALFSVPPRREAC
Sbjct: 61  LEALFSVPPRREAC 74

[Close]

BLAST of Clc10G20750 vs. NCBI nr
Match: KAG6580535.1 (Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017288.1 Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 141.0 bits (354), Expect = 8.9e-30
Identity = 65/74 (87.84%), Postives = 66/74 (89.19%), Query Frame = 0


Query: 85  MEAKQGSANYEEECSTPTRWECRIPAVFNCPPPP---KKKVGSDGKKRDPPKHGYFQPPD 144
           MEAKQG ANYEEECSTPTRWECRIPAV NCPPPP   KKK  S GKKR+PPKHGYFQPPD
Sbjct: 1   MEAKQGPANYEEECSTPTRWECRIPAVSNCPPPPPPKKKKAVSSGKKREPPKHGYFQPPD 60

Query: 145 LEALFSVPPRREAC 156
           LEALFSVPPRREAC
Sbjct: 61  LEALFSVPPRREAC 74

[Close]

BLAST of Clc10G20750 vs. ExPASy Swiss-Prot
Match: Q1JPP8 (Cyclin-dependent protein kinase inhibitor SMR4 OS=Arabidopsis thaliana OX=3702 GN=SMR4 PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.2e-14
Identity = 38/62 (61.29%), Postives = 44/62 (70.97%), Query Frame = 0


Query: 95  EEECSTPTRWECRIPAVFNCPPPPKKKVGSDGKKRDPPKHGYFQPPDLEALFSVPPRREA 154
           EE C+TP     RIP    CPPPP+KK+    +KRDPP++GYFQPPDLE LF   PRREA
Sbjct: 12  EEGCTTPRSTMYRIPVASVCPPPPRKKL-MVVRKRDPPRNGYFQPPDLETLFYAQPRREA 71

Query: 155 CA 157
           CA
Sbjct: 72  CA 72

[Close]

BLAST of Clc10G20750 vs. ExPASy Swiss-Prot
Match: Q9LNX4 (Cyclin-dependent protein kinase inhibitor SMR5 OS=Arabidopsis thaliana OX=3702 GN=SMR5 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.3e-12
Identity = 35/64 (54.69%), Postives = 45/64 (70.31%), Query Frame = 0


Query: 93  NYEEECSTPTRWECRIPAVFNCPPPPKKK--VGSDGKKRDPPKHGYFQPPDLEALFSVPP 152
           +Y+  C+TPTR +CRIPA   CPPP ++K  +   GKKR+PPK GYFQPPDL+  FSV  
Sbjct: 17  DYQMGCTTPTRDDCRIPAYPPCPPPVRRKRSLLGFGKKREPPKKGYFQPPDLDLFFSVVA 76

Query: 153 RREA 155
             +A
Sbjct: 77  ASQA 80

[Close]

BLAST of Clc10G20750 vs. ExPASy TrEMBL
Match: A0A0A0LAJ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734160 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 2.0e-35
Identity = 71/88 (80.68%), Postives = 78/88 (88.64%), Query Frame = 0


Query: 69  KLNQINLCQILLISLGMEAKQGSANYEEECSTPTRWECRIPAVFNCPPPPKKKVGSDGKK 128
           KL  INL  +L ISL M++KQG+ NYEEECSTPTRWECRIPAVFNCPPPPKKK  + GKK
Sbjct: 71  KLYSINLYLLLFISLAMDSKQGTGNYEEECSTPTRWECRIPAVFNCPPPPKKKNATAGKK 130

Query: 129 RDPPKHGYFQPPDLEALFSVPPRREACA 157
           R+PPKHGYFQPPDLEALFS+PPRREACA
Sbjct: 131 REPPKHGYFQPPDLEALFSIPPRREACA 158

[Close]

BLAST of Clc10G20750 vs. ExPASy TrEMBL
Match: A0A6J1J1Y0 (cyclin-dependent protein kinase inhibitor SMR4 OS=Cucurbita maxima OX=3661 GN=LOC111481954 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.5e-30
Identity = 65/74 (87.84%), Postives = 66/74 (89.19%), Query Frame = 0


Query: 85  MEAKQGSANYEEECSTPTRWECRIPAVFNCPPPP---KKKVGSDGKKRDPPKHGYFQPPD 144
           MEAKQG ANYEEECSTPTRWECRIPAVFNCPPPP   KKK    GKKR+PPKHGYFQPPD
Sbjct: 1   MEAKQGPANYEEECSTPTRWECRIPAVFNCPPPPPPKKKKAVGSGKKREPPKHGYFQPPD 60

Query: 145 LEALFSVPPRREAC 156
           LEALFSVPPRREAC
Sbjct: 61  LEALFSVPPRREAC 74

[Close]

BLAST of Clc10G20750 vs. ExPASy TrEMBL
Match: A0A7N2M7Y9 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 9.3e-17
Identity = 44/62 (70.97%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 95  EEECSTPTRWECRIPAVFNCPPPPKKKVGSDGKKRDPPKHGYFQPPDLEALFSVPPRREA 154
           E+ CSTP R EC+IP V  CPPPPKKK  S G KRDPPK+GYFQPPDL+A+F++PPRREA
Sbjct: 8   EDRCSTPKRRECQIPVVVVCPPPPKKKSAS-GMKRDPPKNGYFQPPDLDAIFTMPPRREA 67

Query: 155 CA 157
            A
Sbjct: 68  WA 68

[Close]

BLAST of Clc10G20750 vs. ExPASy TrEMBL
Match: A0A2N9GK17 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30668 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 6.0e-16
Identity = 43/62 (69.35%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 95  EEECSTPTRWECRIPAVFNCPPPPKKKVGSDGKKRDPPKHGYFQPPDLEALFSVPPRREA 154
           E  C+TP R EC+IP V  CPPPPKKK  S G KRDPPK+GYF PPDL+ALF++PPRREA
Sbjct: 6   EGRCTTPKRRECQIPVVLVCPPPPKKKTAS-GMKRDPPKNGYFHPPDLDALFTMPPRREA 65

Query: 155 CA 157
            A
Sbjct: 66  WA 66

[Close]

BLAST of Clc10G20750 vs. ExPASy TrEMBL
Match: A0A2P6RA04 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0466321 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.8e-15
Identity = 38/62 (61.29%), Postives = 47/62 (75.81%), Query Frame = 0


Query: 95  EEECSTPTRWECRIPAVFNCPPPPKKKVGSDGKKRDPPKHGYFQPPDLEALFSVPPRREA 154
           +E C+TP R ECRIP    CPP P+KK   D  KRDPPK+GYFQPPDL++LF++PPR + 
Sbjct: 5   DEHCTTPKRRECRIPEESMCPPAPRKKAAGDQNKRDPPKNGYFQPPDLDSLFNMPPRTQV 64

Query: 155 CA 157
           CA
Sbjct: 65  CA 66

[Close]

BLAST of Clc10G20750 vs. TAIR 10
Match: AT5G02220.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 79.7 bits (195), Expect = 2.3e-15
Identity = 38/62 (61.29%), Postives = 44/62 (70.97%), Query Frame = 0


Query: 95  EEECSTPTRWECRIPAVFNCPPPPKKKVGSDGKKRDPPKHGYFQPPDLEALFSVPPRREA 154
           EE C+TP     RIP    CPPPP+KK+    +KRDPP++GYFQPPDLE LF   PRREA
Sbjct: 12  EEGCTTPRSTMYRIPVASVCPPPPRKKL-MVVRKRDPPRNGYFQPPDLETLFYAQPRREA 71

Query: 155 CA 157
           CA
Sbjct: 72  CA 72

[Close]

BLAST of Clc10G20750 vs. TAIR 10
Match: AT5G40460.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27630.1); Has 87 Blast hits to 87 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.3 bits (103), Expect = 1.1e-04
Identity = 23/62 (37.10%), Postives = 35/62 (56.45%), Query Frame = 0


Query: 86  EAKQGSANYEEECS-TPTRWECRIPAVFNCPPPPKKKVGSDGKKRDPPKHGYFQPPDLEA 145
           E ++   N EEECS TPT  E +IP +  CPP P+K+  +   + +  +  +  P DLE 
Sbjct: 47  EVEEDCYNEEEECSTTPTAKETKIPELLECPPAPRKRRPALKCRSNVVREFFTPPSDLET 106

Query: 146 LF 147
           +F
Sbjct: 107 VF 108

The following BLAST results are available for this feature:

BLAST of Clc10G20750 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905412.1	5.4e-35	95.83	cyclin-dependent protein kinase inhibitor SMR4 [Benincasa hispida]	[more]
XP_031737830.1	3.6e-31	86.11	cyclin-dependent protein kinase inhibitor SMR4 [Cucumis sativus] >KAE8651008.1 h...	[more]
XP_023528630.1	1.1e-30	89.19	cyclin-dependent protein kinase inhibitor SMR4 [Cucurbita pepo subsp. pepo]	[more]
XP_022983341.1	3.1e-30	87.84	cyclin-dependent protein kinase inhibitor SMR4 [Cucurbita maxima]	[more]
KAG6580535.1	8.9e-30	87.84	Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma ...	[more]

BLAST of Clc10G20750 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1JPP8	3.2e-14	61.29	Cyclin-dependent protein kinase inhibitor SMR4 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9LNX4	2.3e-12	54.69	Cyclin-dependent protein kinase inhibitor SMR5 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Clc10G20750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAJ2	2.0e-35	80.68	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734160 PE=4 SV=1	[more]
A0A6J1J1Y0	1.5e-30	87.84	cyclin-dependent protein kinase inhibitor SMR4 OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A7N2M7Y9	9.3e-17	70.97	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A2N9GK17	6.0e-16	69.35	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30668 PE=4 SV=1	[more]
A0A2P6RA04	1.8e-15	61.29	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0466321 PE=4...	[more]

BLAST of Clc10G20750 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02220.1	2.3e-15	61.29	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]
AT5G40460.1	1.1e-04	37.10	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 121..136
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 115..142
None	No IPR available	PANTHER	PTHR33142:SF15	OS01G0843700 PROTEIN	coord: 40..154
IPR040389	Cyclin-dependent protein kinase inhibitor SMR	PANTHER	PTHR33142	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 40..154

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G20750.2	Clc10G20750.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045839	negative regulation of mitotic nuclear division
biological_process	GO:0032875	regulation of DNA endoreduplication
cellular_component	GO:0005634	nucleus