Clc10G20700 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G20700
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	RHOMBOID-like protein
Location	ClcChr10: 34154647 .. 34155958 (-)
RNA-Seq Expression	Clc10G20700
Synteny	Clc10G20700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTTGCCGAAGCCTGATGGTGCAAACGAGGAATGTGATTTGATTTCCGGCTCTCTTCCCATTAATATTCCTAAATTTCATGATGCTCTTTGTACTACACTCGCTTTTACTCTTTCTTCAAAAGAATTTGGCATTTTGCATGGCTCTTGCTCAAGAAGCTCGGTTTTCTTGATATTTTTGTATTCCGGAGGATTAGGATTTATCTCTGTGGACTTGCAGATTTATCTGCAGGATAGGCACTCAATAGCCTCGAAGTCGAAAAGTGTTTGCAATCCTGCATTTTGTTGTTAGTTTGGCACCCAACAATAATTGCCAAATTGTTGATTGTGCACAGAGGCCTGAATCTGAACGTTGCATCTGTGCTTGATATTGAATGGCTATGAAATGCAGTATGATCCAGGAGAATTATAGGATAATTAGTATATTTGAATTTAATATTTGTTTAATTGATTAATTAGTGTTTATTTAGTACTTTATAATTAATTAGTTAATTGTCTTATTTTATTTTAATGTTGTAATAAGAAGTTTTTGATCAACAATTTAATATAGAATTTTAGTTGTTTAGAGAGTGTTCTCCTAAGTTCCTACTTAGGGATGGATTTTTCTTATTTGGCGATGGATTTGGCTTAATTCCTTCATCCACTGCATCCAAAACTTTATGATATTTTAAAGTTTCCTCGGGCCAGATTGGTAAGAGTATGAATTTGGTTTCAAATGCAAACGGTTGACTTAGGATAGAAAATGCAAGTGTTTATTTATGAATTTTACATGCGGTCAGTTCCTGGCAAAACTTGTATAATTTCAGTCATTGGAAATGGAACGGAGACAATTGACGGTTTGTGCTGTAATAGCTCACTCGGCATGTTTTGGTTTGGTTTCAGTTTATGTTCATCCAACCTGCATTTGTGACACGATGTCCAGCACTGGGGAAAAACATCTCCAAGACGATGCCGATGAAGCAACTGATGAAATTAGCAAGCAGAGCGCATAAGAGTCGACCACAGCTTTCGCTGCAAAAGATGAGGAGGGCATCAATAACTGATTCATCAATTCATTGCTCTATTGTCATGAGCATTGGGGAGATTTGCAGGTACTCTTTCTGAAGTAAATCAAGTGTCCAGAGAGAGTCAACACACACATATAAAGCAGAGGAAATATATGCAGAATTAGCAAGAGTTGAGGTGAGTGATTAAACATTTTATTTGCTGCTTACTCACTTATCATGATGGATAACAGAGTCAATGATGCTCTCAGGGTTGCTGCCCAAAATGCGCAAGCAGTGGACTGCCTGGAGAATCTCCAATTTTAG

mRNA sequence

ATGTCGTTGCCGAAGCCTGATGGTGCAAACGAGGAATGTGATTTGATTTCCGGCTCTCTTCCCATTAATATTCCTAAATTTCATGATGCTCTTTGTACTACACTCGCTTTTACTCTTTCTTCAAAAGAATTTGGCATTTTGCATGGCTCTTGCTCAAGAAGCTCGTTTATGTTCATCCAACCTGCATTTGTGACACGATGTCCAGCACTGGGGAAAAACATCTCCAAGACGATGCCGATGAAGCAACTGATGAAATTAGCAAGCAGAGCGCATAAGAGTCGACCACAGCTTTCGCTGCAAAAGATGAGGAGGGCATCAATAACTGATTCATCAATTCATTGCTCTATTGTCATGAGCATTGGGGAGATTTGCAGAGTCAATGATGCTCTCAGGGTTGCTGCCCAAAATGCGCAAGCAGTGGACTGCCTGGAGAATCTCCAATTTTAG

Coding sequence (CDS)

ATGTCGTTGCCGAAGCCTGATGGTGCAAACGAGGAATGTGATTTGATTTCCGGCTCTCTTCCCATTAATATTCCTAAATTTCATGATGCTCTTTGTACTACACTCGCTTTTACTCTTTCTTCAAAAGAATTTGGCATTTTGCATGGCTCTTGCTCAAGAAGCTCGTTTATGTTCATCCAACCTGCATTTGTGACACGATGTCCAGCACTGGGGAAAAACATCTCCAAGACGATGCCGATGAAGCAACTGATGAAATTAGCAAGCAGAGCGCATAAGAGTCGACCACAGCTTTCGCTGCAAAAGATGAGGAGGGCATCAATAACTGATTCATCAATTCATTGCTCTATTGTCATGAGCATTGGGGAGATTTGCAGAGTCAATGATGCTCTCAGGGTTGCTGCCCAAAATGCGCAAGCAGTGGACTGCCTGGAGAATCTCCAATTTTAG

Protein sequence

MSLPKPDGANEECDLISGSLPINIPKFHDALCTTLAFTLSSKEFGILHGSCSRSSFMFIQPAFVTRCPALGKNISKTMPMKQLMKLASRAHKSRPQLSLQKMRRASITDSSIHCSIVMSIGEICRVNDALRVAAQNAQAVDCLENLQF

Homology

[Close]

BLAST of Clc10G20700 vs. NCBI nr
Match: TYK25043.1 (RHOMBOID-like protein 1 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 3.2e-05
Identity = 31/46 (67.39%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 81  KQLMKLASRAHKSRPQLSLQKMRRASITDSS--IHCSIVMSIGEIC 125
           K+ + +ASRAHKSRPQ+SL+K+R+ SITDSS  IHCSIV S+GE C
Sbjct: 15  KEAIDIASRAHKSRPQVSLEKVRKVSITDSSNTIHCSIVTSMGETC 60

[Close]

BLAST of Clc10G20700 vs. NCBI nr
Match: KAA0044094.1 (RHOMBOID-like protein 1 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 3.2e-05
Identity = 31/46 (67.39%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 81  KQLMKLASRAHKSRPQLSLQKMRRASITDSS--IHCSIVMSIGEIC 125
           K+ + +ASRAHKSRPQ+SL+K+R+ SITDSS  IHCSIV S+GE C
Sbjct: 15  KEAIDIASRAHKSRPQVSLEKVRKVSITDSSNTIHCSIVTSMGETC 60

[Close]

BLAST of Clc10G20700 vs. ExPASy TrEMBL
Match: A0A5A7TLL8 (RHOMBOID-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G004440 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.6e-05
Identity = 31/46 (67.39%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 81  KQLMKLASRAHKSRPQLSLQKMRRASITDSS--IHCSIVMSIGEIC 125
           K+ + +ASRAHKSRPQ+SL+K+R+ SITDSS  IHCSIV S+GE C
Sbjct: 15  KEAIDIASRAHKSRPQVSLEKVRKVSITDSSNTIHCSIVTSMGETC 60

[Close]

BLAST of Clc10G20700 vs. ExPASy TrEMBL
Match: A0A5D3DN31 (RHOMBOID-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001640 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.6e-05
Identity = 31/46 (67.39%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 81  KQLMKLASRAHKSRPQLSLQKMRRASITDSS--IHCSIVMSIGEIC 125
           K+ + +ASRAHKSRPQ+SL+K+R+ SITDSS  IHCSIV S+GE C
Sbjct: 15  KEAIDIASRAHKSRPQVSLEKVRKVSITDSSNTIHCSIVTSMGETC 60

The following BLAST results are available for this feature:

BLAST of Clc10G20700 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK25043.1	3.2e-05	67.39	RHOMBOID-like protein 1 isoform X2 [Cucumis melo var. makuwa]	[more]
KAA0044094.1	3.2e-05	67.39	RHOMBOID-like protein 1 isoform X2 [Cucumis melo var. makuwa]	[more]

BLAST of Clc10G20700 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc10G20700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TLL8	1.6e-05	67.39	RHOMBOID-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold23...	[more]
A0A5D3DN31	1.6e-05	67.39	RHOMBOID-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35...	[more]

BLAST of Clc10G20700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G20700.2	Clc10G20700.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004252	serine-type endopeptidase activity