Clc10G20470 (gene) Watermelon (cordophanus) v2

Overview
NameClc10G20470
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr10: 33993163 .. 33994201 (+)
RNA-Seq ExpressionClc10G20470
SyntenyClc10G20470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATAAACATAAAAGAAAATTAGTCCTATCATGTAAACATAACTTAGGTAGAATTATGAGGTTTGAAGTTGGGTAAAAAATCAGACCGCAACCCCATAAATTAGGTAGAATTATGAGGTTGTAATTTCCGACTTCGCTTTATAAGTTTGACTCGCAGAGATCGAGAAGTCGTCAAAGAAACCGATTAAACGTACAAAAAATCAGTCGAACTCTACGGTTACGCCGGCGACTCTCACTATTTCTCCCTCTGTTTCTCCCCATTTCTCCTCCATTCACAAATCCCATACTCTCAATTCTCAAATCTCCGCCGCAAAATGTCGCAGCGACCGGGCAGGCACCAGAGGAGGCCTTCGCAGGGCGTTTTCATGGCCGCCGTTTACCTCTCCGAACCGCCGCCGCCGGCCGGACCGGGATCCACGGTCGAATCTGGCGGTGTGCACTCGACTCTCCTTAATCGGCCACCACAGCAGAGTCGCAGCGCTGATCCGGCGGCCGCGACGGCAGCAAGGCCTCCTGCTCCAGCGGCGTCGAATGAAGCTCCGAATCCGGCGAGCTAGCGGACCAAGGACTCAACGACGTCGTTTTGTTCCATTGCAATATGAAGATCAAGTGGAAGTAGGTTTTCGTTTTTCGATCTGTCGTTTCGTTTCGTTTTCTGTTTTTTTTTTTGGGAAATTTGCTGTTAAATCTCACCTTTTCTTTTGAATCAAGAAAAAGAAAATTCTCAGTTTTTTATTTCTTTTTATTTATGGTATTTTTCTATGTTGACCCGAAGAAAGTGTGGTCTTTGCATTTGGTGTTTTGTGAGCCAGGATCGATGCTGCTCATGCCTGTTGTGTTTTACTCACATTTAAATTGTCCATATCAACGAAAATATTGATGTTTTGATTTGGGTTGTTTTTAAATACTAACAAAATGAACTAAAATATTTATAAATATAGTAAATTTTTACTATTTATATGTGATATCTGGAATAGATTGTAAACTGTTATCTGTGTCATTGTGGTATTTTGCTATTATTTATAAATATTTTCAATAAT

mRNA sequence

CATAAACATAAAAGAAAATTAGTCCTATCATGTAAACATAACTTAGGTAGAATTATGAGGTTTGAAGTTGGGTAAAAAATCAGACCGCAACCCCATAAATTAGGTAGAATTATGAGGTTGTAATTTCCGACTTCGCTTTATAAGTTTGACTCGCAGAGATCGAGAAGTCGTCAAAGAAACCGATTAAACGTACAAAAAATCAGTCGAACTCTACGGTTACGCCGGCGACTCTCACTATTTCTCCCTCTGTTTCTCCCCATTTCTCCTCCATTCACAAATCCCATACTCTCAATTCTCAAATCTCCGCCGCAAAATGTCGCAGCGACCGGGCAGGCACCAGAGGAGGCCTTCGCAGGGCGTTTTCATGGCCGCCGTTTACCTCTCCGAACCGCCGCCGCCGGCCGGACCGGGATCCACGGTCGAATCTGGCGGTGTGCACTCGACTCTCCTTAATCGGCCACCACAGCAGAGTCGCAGCGCTGATCCGGCGGCCGCGACGGCAGCAAGGCCTCCTGCTCCAGCGGCGTCGAATGAAGCTCCGAATCCGGCGAGCTAGCGGACCAAGGACTCAACGACGTCGTTTTGTTCCATTGCAATATGAAGATCAAGTGGAAGTAGGTTTTCGTTTTTCGATCTGTCGTTTCGTTTCGTTTTCTGTTTTTTTTTTTGGGAAATTTGCTGTTAAATCTCACCTTTTCTTTTGAATCAAGAAAAAGAAAATTCTCAGTTTTTTATTTCTTTTTATTTATGGTATTTTTCTATGTTGACCCGAAGAAAGTGTGGTCTTTGCATTTGGTGTTTTGTGAGCCAGGATCGATGCTGCTCATGCCTGTTGTGTTTTACTCACATTTAAATTGTCCATATCAACGAAAATATTGATGTTTTGATTTGGGTTGTTTTTAAATACTAACAAAATGAACTAAAATATTTATAAATATAGTAAATTTTTACTATTTATATGTGATATCTGGAATAGATTGTAAACTGTTATCTGTGTCATTGTGGTATTTTGCTATTATTTATAAATATTTTCAATAAT

Coding sequence (CDS)

ATGTCGCAGCGACCGGGCAGGCACCAGAGGAGGCCTTCGCAGGGCGTTTTCATGGCCGCCGTTTACCTCTCCGAACCGCCGCCGCCGGCCGGACCGGGATCCACGGTCGAATCTGGCGGTGTGCACTCGACTCTCCTTAATCGGCCACCACAGCAGAGTCGCAGCGCTGATCCGGCGGCCGCGACGGCAGCAAGGCCTCCTGCTCCAGCGGCGTCGAATGAAGCTCCGAATCCGGCGAGCTAG

Protein sequence

MSQRPGRHQRRPSQGVFMAAVYLSEPPPPAGPGSTVESGGVHSTLLNRPPQQSRSADPAAATAARPPAPAASNEAPNPAS
Homology
BLAST of Clc10G20470 vs. NCBI nr
Match: KAA0044076.1 (hypothetical protein E6C27_scaffold236G004240 [Cucumis melo var. makuwa] >TYK25061.1 hypothetical protein E5676_scaffold352G001830 [Cucumis melo var. makuwa])

HSP 1 Score: 116.7 bits (291), Expect = 9.2e-23
Identity = 66/82 (80.49%), Postives = 69/82 (84.15%), Query Frame = 0

Query: 1  MSQRPGRHQRRPSQGVFMAAVYLSEPPPP--AGPGSTVESGGVHSTLLNRPPQQSRSADP 60
          MSQRPGRHQRRPSQGVFMAA YLSEPPPP   GPGSTVESGG HS LL RPPQQSR+ADP
Sbjct: 1  MSQRPGRHQRRPSQGVFMAADYLSEPPPPPVIGPGSTVESGGPHSALLTRPPQQSRNADP 60

Query: 61 AAATAARPPAPAASNEAPNPAS 81
              A RPPAPAA+N+A NPAS
Sbjct: 61 ---VAPRPPAPAAANDAQNPAS 79

BLAST of Clc10G20470 vs. NCBI nr
Match: KGN58888.1 (hypothetical protein Csa_002334 [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 6.6e-21
Identity = 65/83 (78.31%), Postives = 68/83 (81.93%), Query Frame = 0

Query: 1  MSQRPGRHQRRPSQGVFMAAVYLSEPPPPAGPGSTVESGGVH-STLLNRPPQQSRSADPA 60
          MSQRP RHQRRPSQGVFM A YLS+PPPP GPGSTVESGG H STLL RP QQSRSADP 
Sbjct: 1  MSQRPSRHQRRPSQGVFMPADYLSDPPPPVGPGSTVESGGPHSSTLLTRPTQQSRSADP- 60

Query: 61 AATAARPPAP--AASNEAPNPAS 81
             AARPPAP   A+N+APNPAS
Sbjct: 61 --VAARPPAPPAVANNDAPNPAS 80

BLAST of Clc10G20470 vs. NCBI nr
Match: KAG6580559.1 (hypothetical protein SDJN03_20561, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 103.2 bits (256), Expect = 1.1e-18
Identity = 59/80 (73.75%), Postives = 62/80 (77.50%), Query Frame = 0

Query: 1  MSQRPGRHQRRPSQGVFMAAVYLSEPPPPAGPGSTVESGGVHSTLLNRPPQQSRSADPAA 60
          MSQR GRHQRRPSQ VF+AA YLSEPP   GPGS VE  G HS  L RPPQQSR+ADPA 
Sbjct: 1  MSQRQGRHQRRPSQSVFIAADYLSEPPRATGPGSAVEHAGPHSAHLPRPPQQSRNADPA- 60

Query: 61 ATAARPPAPAASNEAPNPAS 81
            A RPPAPAASNEAPNP +
Sbjct: 61 --APRPPAPAASNEAPNPTN 77

BLAST of Clc10G20470 vs. NCBI nr
Match: KAG6596419.1 (hypothetical protein SDJN03_09599, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 101.7 bits (252), Expect = 3.1e-18
Identity = 59/80 (73.75%), Postives = 61/80 (76.25%), Query Frame = 0

Query: 1  MSQRPGRHQRRPSQGVFMAAVYLSEPPPPAGPGSTVESGGVHSTLLNRPPQQSRSADPAA 60
          MSQR GRHQRRPSQGVFM A YLSEPPPP GP   VES    S+ L+RPP QSR ADP  
Sbjct: 1  MSQRSGRHQRRPSQGVFMTADYLSEPPPPTGPPLPVESVDPQSSFLSRPPPQSRYADP-- 60

Query: 61 ATAARPPAPAASNEAPNPAS 81
            AARPPAPA SNEAPNPAS
Sbjct: 61 -PAARPPAPAVSNEAPNPAS 77

BLAST of Clc10G20470 vs. ExPASy TrEMBL
Match: A0A5A7TPQ1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001830 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 4.5e-23
Identity = 66/82 (80.49%), Postives = 69/82 (84.15%), Query Frame = 0

Query: 1  MSQRPGRHQRRPSQGVFMAAVYLSEPPPP--AGPGSTVESGGVHSTLLNRPPQQSRSADP 60
          MSQRPGRHQRRPSQGVFMAA YLSEPPPP   GPGSTVESGG HS LL RPPQQSR+ADP
Sbjct: 1  MSQRPGRHQRRPSQGVFMAADYLSEPPPPPVIGPGSTVESGGPHSALLTRPPQQSRNADP 60

Query: 61 AAATAARPPAPAASNEAPNPAS 81
              A RPPAPAA+N+A NPAS
Sbjct: 61 ---VAPRPPAPAAANDAQNPAS 79

BLAST of Clc10G20470 vs. ExPASy TrEMBL
Match: A0A0A0LAM0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734895 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.2e-21
Identity = 65/83 (78.31%), Postives = 68/83 (81.93%), Query Frame = 0

Query: 1  MSQRPGRHQRRPSQGVFMAAVYLSEPPPPAGPGSTVESGGVH-STLLNRPPQQSRSADPA 60
          MSQRP RHQRRPSQGVFM A YLS+PPPP GPGSTVESGG H STLL RP QQSRSADP 
Sbjct: 1  MSQRPSRHQRRPSQGVFMPADYLSDPPPPVGPGSTVESGGPHSSTLLTRPTQQSRSADP- 60

Query: 61 AATAARPPAP--AASNEAPNPAS 81
             AARPPAP   A+N+APNPAS
Sbjct: 61 --VAARPPAPPAVANNDAPNPAS 80

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0044076.19.2e-2380.49hypothetical protein E6C27_scaffold236G004240 [Cucumis melo var. makuwa] >TYK250... [more]
KGN58888.16.6e-2178.31hypothetical protein Csa_002334 [Cucumis sativus][more]
KAG6580559.11.1e-1873.75hypothetical protein SDJN03_20561, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6596419.13.1e-1873.75hypothetical protein SDJN03_09599, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TPQ14.5e-2380.49Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LAM03.2e-2178.31Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734895 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..80
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..58

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc10G20470.1Clc10G20470.1mRNA